Array 1 88347-89594 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGP01000008.1 Salmonella enterica subsp. enterica serovar Saintpaul strain N28730 NODE_8_length_268174_cov_4.04865, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88347 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 88408 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 88469 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 88530 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 88591 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 88652 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 88713 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 88774 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 88835 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 88896 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 88957 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 89018 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 89079 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 89140 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 89201 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 89262 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 89323 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 89384 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 89445 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 89506 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 89567 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105854-106677 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGP01000008.1 Salmonella enterica subsp. enterica serovar Saintpaul strain N28730 NODE_8_length_268174_cov_4.04865, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 105854 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 105916 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 105977 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 106038 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 106099 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 106160 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 106221 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 106282 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 106343 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 106404 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 106465 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 106526 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 106587 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 106648 29 96.6 0 ............T................ | A [106675] ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //