Array 1 113900-112372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDOL010000002.1 Alcanivorax marinus strain NMRL4 NMRL4_SPades_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 113899 28 100.0 32 ............................ CTGATCGCGGCACCCCGGCCCTACTGGGTCAG 113839 28 100.0 32 ............................ TACCTGATTATCGAAAAGCTCAAGGAGCGGAA 113779 28 100.0 32 ............................ TTCGTCGTCCGCATAGTTCAGTAGTGCGGCGG 113719 28 100.0 32 ............................ AAGAGGCGAAACAGGAGATCGACGCCCGGGGC 113659 28 100.0 32 ............................ AGGAATCCGAGACCGAACAGGAAGCGGAGACC 113599 28 100.0 32 ............................ TGCGTCTGCTCCAGCGACCAAACGAGATCGTT 113539 28 100.0 32 ............................ ACCGACACAGCCCAGGCATGCCGCACCTATGA 113479 28 100.0 32 ............................ GTCACGAAAATGAGCCGGGCGGTGAAGGCGAC 113419 28 100.0 32 ............................ TGTTTGCCGGGTCAATGATGGCCGGCGGGCAA 113359 28 100.0 32 ............................ TGCTCCAGCGCCTGCAGGATGGGGATCCCTGC 113299 28 100.0 32 ............................ GTGAAGGGAAGGGCGTCAGCGACCCGCAAGAC 113239 28 100.0 32 ............................ GTTGGGCTCGCCGCCGCTGCGATTGGCACCGT 113179 28 100.0 32 ............................ CTCGTGGCCCAAGGTGGTGCGCACCACCTCCT 113119 28 100.0 32 ............................ ACTCGGTGCGCTCCTGGGTCTGGCCGGTCTGC 113059 28 100.0 32 ............................ AGCATGACCCATGTCAGGATCGTCATCATTCG 112999 28 100.0 32 ............................ ACAAAGCGGGTCAGGTATCGCTCGCCCGGCTG 112939 28 100.0 32 ............................ TGGAAATGGGCCTGGACACGCCCCTGCAATTC 112879 28 100.0 32 ............................ AGCAAAATCACGCCCAAGTCGGCGTTCTGTAG 112819 28 100.0 32 ............................ CACGACGTGACCGTGGAGCCGACCGGTGGCCC 112759 28 100.0 32 ............................ AGTGCGCCCAGGTCGGGCAGTTCGTGGGCAAG 112699 28 100.0 32 ............................ GCGTACCGGGGCACCCATTCCGAGACGGCCGC 112639 28 100.0 32 ............................ ATGCGGAGAGCCATCGAGGAAACCGACCTGGA 112579 28 100.0 32 ............................ ACGTAGGCGCCCATGCCGCCGGCCAGTACCTC 112519 28 100.0 32 ............................ ATCAAGGCGGCCGGCCCGAATGTACGGATCGG 112459 28 100.0 32 ............................ AACTCGAAACCGTGGGGCTGCGCGCCCCACAC 112399 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.9 32 GTTCGCTGCCGCGTAGGCAGCTAAGAAA # Left flank : TCGTCTGGCGGAACTGATGGGTGGAACCTGGCTTGGTGGTATGACGGACCATCTGCACGTGGGCAGCATACAACCCGTGCCATACGACGCCCGGCACCGCGTGGTGCGTCGTGTACAGCCGAAAACCAATGTGGCGCGTCTGCGGCGACGTTATTGTCGGCGCCACAATGTTTCCGAGGAAGAGGCCCGGCGTCAGCTGCCCGACAGTATTGAAAAGGCGGTGTCCCTGCCGTTTGTCACCCTGCGAAGCGCGACTACCGAGCAGCGCTTTGCTTTATTCGTTGAACACGGCCCTCTGCGCGATGATGCTGTTCCTGGTCTTTTCAGCGCCTACGGACTGAGTCCGACAGCAACGGTCCCCTGGTTCTGACCCTTTCTGCTCGGGATTTATAGTAAACCTTGTTAATCAAACACTTATCTCCCACCCTGAAAAAAGGGTGGGAGTGGGTGTTATTCTGCTTTCTACTGAATAAACAATAGGTTACTGAGACTAACCTCTA # Right flank : GATACTTCGCGTGACAGGCCGCTCGGATCCGAATTTTCGGTCGAACGGGTGGCTTAAAAAGCGCCATAGAACCTCGATGTTTCGGACCCTACGCCACACCGGTGGGGGACGATACGAACATCCACCGCAGCGACGCTGATGTTGGTGTGACTACTTGATATGGTCACATCACGGCTGTATGTTTAATGATCAATCATGGTGGTCAGGAGGCAGACATGGAGGCTGAGCAGGTTACCAAGTCCCGGTTCAAAGCCCGGGCCCTGGAATTTTTCCGCAAGGTCGAAACCTCGGGGGTGCCGGTGGTGGTCACCGATCACGGCAAGCCGACCGTGGAAATCCGGCGTTACCGGTCCGATCAGCGCTCTCCGCTGGAGAGACTCAAAGGCAGTGTGGTGGACTTCAATCGCCCGACCGATCCGGTTGCCGAAGACGACTGGGACGCGGCGCGGTGATCGTACTGGATACCCATGTGCTGGTGTGGTGGGTAAATGGGGGTGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 126004-123691 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDOL010000002.1 Alcanivorax marinus strain NMRL4 NMRL4_SPades_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 126003 28 100.0 32 ............................ GCAAGGAAGAAGCCCGGGCCCAGGCCGAACGA 125943 28 100.0 32 ............................ TCCAGCGGCGGCGTCCACAAGAAGCTCCGCGC 125883 28 100.0 32 ............................ TCGTGGCGCGCGGAAAATCGGGTCTACTCCGA 125823 28 100.0 32 ............................ ACGAGGACTACGACGACATGGAAGCCCGTTTC 125763 28 100.0 32 ............................ AGCTCAAAGTGCGGCAGGTCGTCAAAACCGTT 125703 28 100.0 32 ............................ AGGCCCGAGTCGATCTCATTCCTGCGCCGCCA 125643 28 100.0 33 ............................ GACTGGCCGGCGGAGACAGCAGAGGGCTACGAC 125582 28 100.0 32 ............................ GGTTTAATCGTACGGATGCGCGCCATCAGATT 125522 28 100.0 32 ............................ TGTCGGCCACTCCGTGAGGATTCAGTGAGTGT 125462 28 100.0 32 ............................ TCTGGCTGGATCAGTGCCGGATCGGCCCGGGC 125402 28 100.0 32 ............................ ATCGAGATACGGCACAGATAGCGCCAAGTCGC 125342 28 100.0 32 ............................ AGCGGGAACTTGGCGGCCAGAGTGGCGGTTGT 125282 28 100.0 32 ............................ CAGCACTGGCAAAGGACCTGACGAATAACCCC 125222 28 100.0 32 ............................ TCCACGCGCTCGACCACGATGCACTGGTGGCG 125162 28 100.0 32 ............................ ATCATCCTTAGGAACGGGCGCGGAATCCTGCA 125102 28 100.0 32 ............................ ACCACATGCCCGACCTGGGCGCACTGGAAGAT 125042 28 100.0 32 ............................ TACGCCGTCGTTCTCGCCGTGGTCGCCGCAAT 124982 28 100.0 32 ............................ GACGACGAGGGCGCCGAGCATACGGCGCTGAA 124922 28 100.0 32 ............................ AGCCGATAGTGCAGCGGCGTCCAGTCATAGCC 124862 28 100.0 32 ............................ AGCGTGGTCGAGCTGCGCAACGGCACCCGCAC 124802 28 100.0 32 ............................ CCTTTGTTCGCGGGGTACGATAACACCACCAT 124742 28 100.0 32 ............................ AAGCGGAGCGCGGAGCCGGAGGCGGAGGTGCG 124682 28 100.0 32 ............................ GTGGGCGCCGTGATCGTGCCGGACCCAGCCCA 124622 28 100.0 33 ............................ CACCGCCACGCCGGCGCCCGTGGTGGGGTCCAC 124561 28 100.0 32 ............................ AATCTCAGCCACCGCCGTCATGGTCTCCTGGA 124501 28 100.0 32 ............................ GCCGACGCGCTCGGAATCCGTTACCAGTCCGT 124441 28 100.0 32 ............................ GGGCACACTCACAATCAATGCCCATGAGCGCC 124381 28 100.0 32 ............................ GGCATCGAAGAGTTCCTGTTCGAGGACCAGGA 124321 28 100.0 32 ............................ TGGGACGCCCGGGCTGCCATCCGCGTTGAGCG 124261 28 100.0 32 ............................ AGCGGGCCCGGTAGGGATCCTGCGCGAGCAGC 124201 28 100.0 32 ............................ TCGCACTCCTCGTCGTCGTTGACCGGGACACC 124141 28 100.0 32 ............................ GCTGGCGGTTAGCCCGCCTGGGGTTGGCTCTG 124081 28 100.0 32 ............................ AATATGCAATAGCGTAACTGTTGAGGCCCCGG 124021 28 100.0 32 ............................ GTTGTCGTAGCAGCGCAATTCGGTACCGTAGC 123961 28 100.0 32 ............................ ACCGGCCGCAGCCGGCGGCCTTCACCCCAGGG 123901 28 100.0 32 ............................ GACAAGGGCCAGATCGAGGACCAGGAGGTGCT 123841 28 100.0 32 ............................ ATTTCGGAAACTTAGAAATCGACAAATCCGCT 123781 28 100.0 32 ............................ GCCGGGGATCCGGAATGGAGCGGGAGCCAACG 123721 28 82.1 0 .A........AT.............CT. | C,GC [123694,123696] ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.5 32 GTTTGCTGCCGCATAGGCAGCTAAGAAA # Left flank : GCCATCTCTCCCGACTCTGATCGGGTCTGGGCCACCATCGGTGCCGGCTTCCAGCCCACCGACAACCTCAGCATCGACGTGGCCTACGCCCATATCTGGGTGGATGACGCGGATATCCGCCGTCAGGACGGCACCAAGCCGCCGCTGGCCGGCACCTACGAACTGGACGCCAACGTCATCGGCGCGCAGCTGAACTACCAGTTCTGAACGCCGTTCGCCAAGGCGAAATAAAAGAAGCGGGCCCTCGGGCCCGCTTTTTTCGTCCCCGGCCAAGCGCTTCTTGCTGAAGTGACGCCTAACTCCAGGGGTGCTGTGTCGCGATTCGCCGTGTTATGTGCGATTAGGCCGCTTCATCGATCTCTTCTTGGGAACCCTTTTTTATAAGACAAAAAGAAGTTATTTAATATCAATGAGTTAAAAGGCTGTCTCAACAAAGGGTGATTCGCTGTGATGGGCGACTTATGGAATATATTTCAAAGAGTTATGATCGGGGCGTTCTA # Right flank : GGAGCGAAAGCATCATCAATTATGCTGCCAAAAGCTCAAAAGCGGAAAGGTGCCTATTTTAAGGGCTCTATCAGTGCAGGAATTGGCAGCGTCGGCCGGCGCGGAGGGAAGTAAATAAAACGTAGTATAGATAGGTCTCTCCCTATTCAGGCCATGATTGAAGGCAATATTGGCGCAGCCTCAGTGGGGGCGTTGTGAAAATGGAATTGTGATACTCGTCACAAAGATATAGTCTTCGGTGAATAATAAAACACCTAGGGATATGTCGTGACCCGCCTTGAGCGTTTTTATCGCATTCATGGTCTGTTGCGCCATGCTCGCTGCCCGGTACCGATGCGGCGCTTTACCGAAGAGCTGGGGGTAACACGGAATACGGTCACCCAGGATTTTCAGTATTTGCGTGACTTTTTCGGCGCGCCCATCGTCTACGACCGCGAGCGGAACGGCCATCATTATGACCCTGATGCCCCACAGTTTGAATTACCCGGCTTCTGGATGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGCATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //