Array 1 247444-244299 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHOD010000004.1 Bifidobacterium pseudocatenulatum isolate Bifidobacterium_pseudocatenulatum_LFYP_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 247443 36 100.0 34 .................................... AGGACCAACAAGGGTGTTGCACTTCTAAATAGAC 247373 36 100.0 36 .................................... ATACGGTGCTGCCGTACTGGTATGTTCCTGGAGCTA 247301 36 100.0 38 .................................... CGATGCGATTATGCGCATGATGCTCGGAAACAAGAAAG 247227 36 100.0 37 .................................... CCGATGGTCTGCACGTCGAAAAAGTCCAGATCATGCA 247154 36 100.0 38 .................................... GGACTGTAGGTCAGCCGGTGCACGGTCTTCTGACCAAG 247080 36 100.0 35 .................................... TTCCTGCATCGTTGGGGAATCTACGGAATGTCAAA 247009 36 100.0 36 .................................... AACTTGGGTCATTAGAGTATACTTGACTTGAGACAG 246937 36 100.0 37 .................................... GTGACATTGCCGCCCCTAATCGTCTGTTGGCGTCCAT 246864 36 100.0 35 .................................... TCCCATGCGTCGAGAATGTCATCGTCGAATGCGGC 246793 36 100.0 37 .................................... GGCTTTCTTTCCGTATAGGAGCATGACGTTCGCATTA 246720 36 100.0 37 .................................... TCGCTTGCTCAAACCAATCTCGGCAACCAACAAACCA 246647 36 100.0 34 .................................... GACGCCACATTTCCGGATCGACCGTGGTCGTGCT 246577 36 100.0 34 .................................... TGCTCGGAAGTGGTGCCACGGAGTTTCGCATCCA 246507 36 100.0 36 .................................... GTGTCATTGTCCATTGTTGTTCGTTCTTTCTCGTGG 246435 36 100.0 37 .................................... TAAGCAGACCATGGACTCGACCAGTACGAATGAGTCT 246362 36 100.0 36 .................................... GTTTGGCATTGGCGGACGGGGCGGTAAAGTTCAGGC 246290 36 100.0 34 .................................... TCGCCGTTTCTTATGCGATTGACTTTGTCCATGA 246220 36 100.0 40 .................................... TCGAGAAACCATGCGTCACAGGTTTTCGGCAGATTCAGCC 246144 36 100.0 35 .................................... AACAAAAGCCTGTGGGACATCATGGGAGCGCCCCT 246073 36 100.0 36 .................................... GATACGGTGCTTGAAAACGCGGACGCCATCGAAAAG 246001 36 100.0 37 .................................... GTGGAACCGTAACGCTTCAAGGTGCGCGGGGAGCCGA 245928 36 100.0 39 .................................... CTGTGAGTGCCGCCGACGGTCAGACCCGTGACGACGTAA 245853 36 100.0 34 .................................... GCCGGTGGCGGCGGAGATCAGGGAGGCACGGGCG 245783 36 100.0 39 .................................... TGGAATGGTGTCGGCTGGTGACCAGCGGTATGCTGGCGG 245708 36 100.0 35 .................................... TTATAGCGTTCCGGTAGGCGGAACATGTTGCGAAA 245637 36 100.0 34 .................................... CTAAAAGTGGCGTGCGTGCAATGTCGATAGCGTC 245567 36 100.0 35 .................................... AACAACAATGTGAGCACGGCAAACCAACAATTGGC 245496 36 97.2 38 ........................T........... TCGACCCATGAGGTGCCGGCTAACCGGCGCGTCGATGT 245422 36 100.0 37 .................................... GGCCGTGAGCGCTGCGATGAGCGTGATGACCAGCATG 245349 36 100.0 35 .................................... AGGATCACCGTGACGATCAGCAACAACTCCACCTG 245278 36 100.0 36 .................................... ATGGCGCAGAAATACGGATGCCTCGACCAAGAGACA 245206 36 100.0 38 .................................... CGGCACGGAAGACAGGACGGGGCACGTCAGGCGATCGG 245132 36 100.0 37 .................................... GTGGCGTTTTCGGTGGCGTCAAGTCAGTCGCGTCCGA 245059 36 100.0 37 .................................... TCGTCCTCATGCGGATCCATGAGCTGGTGGACGTGTT 244986 36 100.0 38 .................................... GATAGGCAATGTTTCCATCAAAATTATATCATGCGGCG 244912 36 100.0 37 .................................... TCCATGCTCATACCGGTGGCCGGCAGCGTGTCGCGGG 244839 36 100.0 36 .................................... GCTAAGACTGGCGAGGAAGTCGTGGAAGACTGCAAG 244767 36 100.0 37 .................................... CCGACCAGCCGGGAAGCCGTCCAGCAGACGAATACTG 244694 36 97.2 36 ...................................G AGGTGGCCTGAGCGGTAACCTTCAACACTTCGGCGG 244622 36 97.2 35 ...................................G GGAAAGCTATCCGGTCGTTTAATCGCCGATCAGAG 244551 36 100.0 37 .................................... CTCGACGGTGACAAGGTCGGCAGCGTCGTCAACGGAT 244478 36 100.0 36 .................................... GCGCGCGGCGGCAATCCGGAGACTGAAGCCAGGTTC 244406 36 100.0 36 .................................... GAGAGATAATAGTTGGCGAGCCACTGGCTCAGATAG 244334 36 94.4 0 ..................................AG | ========== ====== ====== ====== ==================================== ======================================== ================== 44 36 99.7 36 ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Left flank : CCGCAACACTTTTTTGTGTTTCATACTGTTTAGTAAGATTTCGTGTTTCAATAACATAATTATTCATTATACATAGCCTCCTTTTTGCCACTGATTATACTTTACCATGCCAACCTAACTTAAACCTAACCTAAACCTAACCGGCAGCTAAAATTTATCCTCTTACAAAAAGTCCCCTGCGTTTGGCAGGGGAAACTTCAAGCACTCAAGGGGAAATCTATCATGAATATTGTTTGTTTATTAGGAACGCTGTTGACCGATATTGCTCCTCCCATTTTTTCAACTAACTGCTTTGTAATGGAAAGTCCCAAAGGTTTTTTATGAATTTTGGAATACGAGAGGTGAATCATTGCTGCGACACGCGATGACCTCTCGCATGAGGAAATATAAGGGTTTATGTCTCTTTTTCTGGTGATAAACTGACTGGAGGGAGAGGTATCTGTTCCGCTCTCGCAAAGTTTTTAATTCGCTTAGTCATTAGAGCGGATTAGAATGAGACC # Right flank : TCTATTGGCTCTGATTGTCGTTGTGCGCCCTGGCTTGTGAAGCCGCTTTCTGAATTAGGAATAGCTGCTATCAGGGAGGGCAAGAGAACTATGTCAAATTTGACGTAGATTGTGGCATTTTCTGTGGCCAAGTTCATCCTTGATGAAAGGATTTCTACTTGTAATGTAGTATTGGTGCGTATGATGCTGAGAATTGACGAGCGCGATTTGAGGTCGAAGCTCAATGAGCACAGGAGCCTTATTGGATATGGTTCCAAGGGCGACGGCATCGCCAACATTGTTGCGGGCCTATTCTATATTCCAACAGCATGGACGTTTGCGGAATTGCCGATGCGGGCACGATGCTTATTTGCTGTGCTGGGTGTTGTGATAATCGCGTTGGGTGTCGCGAGTATCGTATGCAAGGGACTCACTTCCGAAAAACTATATAAGGAAATCGAATCGATGAACAGAAGAGCTAGCTCTCTCATTGCGGTCAAGGATGGCATGGACGCGCTGTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.00,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 97048-97172 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHOD010000007.1 Bifidobacterium pseudocatenulatum isolate Bifidobacterium_pseudocatenulatum_LFYP_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================ ================== 97048 23 100.0 28 ....................... TGAGGGATACGAATCCGAATGTTTGTGC 97099 23 95.7 28 .....T................. CACAAGGTGCCAAAACCGGTGTTCAATT 97150 23 95.7 0 ......................A | ========== ====== ====== ====== ======================= ============================ ================== 3 23 97.1 28 GTCCGATTCTGGTGAATCGGACG # Left flank : CCGCGCAACTGTCGGTTGCGTCGCAAAATTTGGTTGCGAATCGCAATGCAACCGAAAGATGGTGGCGTGGAACGCGACGTTTATGACAAGCTGTTGCTTGGCAATCGCCAATAATCGCAAGTCGAGGCGATATGGAAACTCGACGAAAGGGCGGACATGAGTTTCAAAGAGAATCTGCAGTATCTGCGCGGTTCGCGCAACATGACGCAGGAACAGCTGGCAATGCTGCTGGGCGTTTCCCGGCAGGCAATTTCGAAATGGGAGTCCGAGAAGGCATACCCCGAAATGGACAAGCTGCTGATGCTTTGCGACATGTTCGGCGTGACGTTGGATGATTTGGTCATGGGCGACGTGCGCGCGTCGGCGGGCTGTGGGGGTGCGGGACGCGTGGACTTGGCTGCTGATACGGATGGTGTGGCCGCGTCGGTTGGGGTGGCCGACGCTGCTGTTGGCGCGGTTCCGGGGGTAATCGGGTTTGCGGCATCGCAGGTCGCAGGAAT # Right flank : ATGCGGGGTGGGCGGCAGGTAGGCTGGAATCCGTGAATACGGATCAGAAACTTCCCGCCGAATCCGCAGGCGAACGCCCCAGTACCCCCCTATTTGGTCATGCCATATCACACGCGGCGACACTTATCGGCCTGTTCGCAATCGTCCTGTGGGGCTTCATGGCCGGCCTCGTGCGACTCGTTTCCGAATCGTTCGGAGCCACGCTCGGTTCGGCGCTCGTCTACACCGTCGGTGGTGTCATGCTGTTCATTGTGCGCCGTCCGAAACCAATCCGCGAAGCGCCACGCAAGTACCTCATCGCAGGCGGACTCATGTTCATCGCATACGAGGCGTCAATCTCGCTGTCGATTGGCCTGGCCACAACGAACGCGCAATCCGTGGAAGTCAGCCTTGTCAACTACTTGTGGCCGACGCTGCTGGTGCTGATGACCGCAGCGGTATCGCACAAACGTGGTGCGGTCGCCAAAGCGATTCCTGGCGCGGTGATCGCAACCATCGGT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGATTCTGGTGAATCGGACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //