Array 1 70-1595 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQSX01000041.1 Clostridium botulinum strain H61 Cbot_71_contig_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 70 30 100.0 35 .............................. TTTTTCTAAACTCCCTTTAAATAAATTTCTTTAGC 135 30 100.0 35 .............................. AAATTTAGGTATATTTTTTAAAAATAGTATTTACA 200 30 100.0 36 .............................. AATTTATAATTTACGTTAAAAAGCTTTGCTTTTTAG 266 30 100.0 34 .............................. GAAATGGCAAGACTTGTTACATTAGAGATGGAAA 330 30 100.0 35 .............................. GTAAATGGGAAGATACTTGTATAAATGATTCTACC 395 30 100.0 34 .............................. TTCCCCTTTTATAATAATATTTAAGTTCTTTTAA 459 30 100.0 35 .............................. TTAATTTTCTCTTTGTTTATGCTCCAACTATTATA 524 30 100.0 35 .............................. TACAATGCATATAAAGAAATTATACCTATAAATAG 589 30 100.0 35 .............................. TCTTTCATAACATCCATTACTGATAATATAGAATT 654 30 100.0 35 .............................. CTTGTTATAACTCCCGCAGTTGCCTCTAAAAAAAC 719 30 100.0 35 .............................. AAGTATACAACACAATCTCCACCTTTATATGCGTT 784 30 100.0 35 .............................. ATTATTATAACTTTTACTGTTCCATTTCCCGCCCA 849 30 100.0 35 .............................. TAGAGAAAATGCTTTTGAAGGCAAAGGTAATAATG 914 30 100.0 35 .............................. GCAATAGGCTTAAAACACTATTTAGCGGATGCAGA 979 30 100.0 36 .............................. CCCTTTCTGACTATTGTACATTTAAAACTTTAACTA 1045 30 100.0 36 .............................. ACTTCCCAATCTTTAGTGTAAACATCGTTTACCTTT 1111 30 100.0 36 .............................. GGCCACATTCTTTTGTCCCACAGTTTACCACGTAAG 1177 30 96.7 35 ................A............. TCTTGAATAGTAATATAATCATAGTTGTTTAAAGT 1242 30 96.7 34 ................A............. AAAATATATATGGAACTAAAGAGGGATTTAACAT 1306 30 96.7 36 ................A............. AAAGCTGGTATAACTGTAATAGTTTCCCCACCAGTT 1372 30 93.3 35 ...............TA............. CCTTCAATTAGTCCCAATGTTTTAGATTCTAATCT 1437 30 100.0 35 .............................. TCTCTTTTAAAACTTATAGGAATTTTCATTTTGTC 1502 30 100.0 34 .............................. AATAGCAGGCAATAGATTAGCACCAATAGGGTGT 1566 30 96.7 0 ...............A.............. | ========== ====== ====== ====== ============================== ==================================== ================== 24 30 99.2 35 GATTAACATTAACATGGGATGTATTTAAAT # Left flank : ATTCATAGGTTGACATTTATAGATGTATTTAAATCCTGTATTTTCACCTGTATTTTCCCAAACATTATCG # Right flank : TCCATAATATACTGGTGTTGTTATGAAGAATAAGCCTAACCTAAATTTTAGATTGGGCTAAATATTACTAAATAGAATAAAACATTAATTAAAAATATTTTTATCAAACATTTCTATAAAATTACATGAAATATTTGATAGAGGTTTATTTTTAGGCCATATTAATCTTAGATATGACTCAATTGATGGTTCTATTATCTTTTTTATCTTTAGATTAACATTGGGTAAGATATTAGAAGCAGTAAGTGGTAAAATAGAAATTCCAATTCCAGCTTCAGCCCAACTTAAAGAGGTAATAATATCATCATTCTTACATATTATATGTGGTTCAAAGCCTGCCTTATTACAAGCATTTTTTATAACATCATCGTATCTTCTATTAATTATTAATGGCTTATCTTTTAATTCGTTAATGAGAATAGTGTTACTTTCTATAGAATTATAGAATTTAGATTTTGCAATTGTAACAAAATAGTCATTTAAATTATTTTCAAGGTTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 438-663 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQSX01000038.1 Clostridium botulinum strain H61 Cbot_71_contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 438 30 100.0 35 .............................. TCCACACTAGTAATGGCATATGTTTTCGTTGGAAA 503 30 100.0 36 .............................. GCAAATATTCCAAGAAGCAATCAGATTAGATTGCAC 569 30 100.0 35 .............................. ACTTATTTGTATGCCTTTATTTGGGATTGTAGATT 634 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GATTAACCTTAACATGGGATGTATTTAAAT # Left flank : ACCAAAATATTGTCCAAAGTAGAAATGTGAGTTTTTACTTTGGATTTTTTTTATTTTAGAGGAATAAAATATAATATTGATTAGATATTTTAGATAATAAAACAATAGCAATAAAAACGGGATTAACAGAAGAAATAGATGCTCTTAGAAAAAAGAAGGTAATTAGTATTTTTTAGAAACACTTAGAATTTAATTATCTTAGTTTTTTTTCTGTACAATTCTATTAAAGTGTATAATTTAACTAGAATAGTAAATATTCTATTTTACCAGCCATAAATTTATATAAAATCCCTTAATCCATTGAAATTACTGGGCTAAGGTTGCCATTGAAAATTTTTATTGAAATTTCACAAACGGTTGGTAAAGTTTCCTTGAAACCTTGAAGTTTCAATGCCTTAGTGGTATTATTGATTTAAGAGAATGGCTATTTTACTGTGG # Right flank : TAGAGCATTAGATAGTATTTTTATTGCCTTTGGAGAGGGCTTAACATTAAAACATCCTTATAGCTATAACTTAGTTTTGTAGCTATAAGGATGTTTTTTTACTCTTAATAATGTAACAAAATATGTTATACTTGAAAAAAACAAATTGTAATTTGCATGGGAGAATACAAAAATGAGCAAATTGACTAAATATATTGAAGATTTAAGAAAAAAGTATGGGGATGCAATAGTAACAAAAGAAAGTCATTATGATGATATGATGCTTTTAAAGGTACCTGAGCCATTGAGGGAATTTTATAGGGAATATGAAAGTTTAGAAATGCCTTTTGGAATTATTGACTCTATCGAAATCAGTATAAGATCTTCAGAAGCAGAACCCTTTAAAAGTGAAGGCTGGTTTTCATTTGGTGCAGATAGATATTTTTCCTTCTGGCTATGTGCTTATAAGGAAGATAATTATGGTAATTCCATTATTTCATGGGATCACGATATAGATGATG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 4359-5236 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQSX01000038.1 Clostridium botulinum strain H61 Cbot_71_contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4359 30 100.0 35 .............................. AGCTTATTATCTTGTGTAACTGTTACCGATACTTC 4424 30 100.0 34 .............................. GAAAAATATAATGTTAAATATGATTTATTAAAAG 4488 30 100.0 38 .............................. ACAGCAGTATGTGCCATCTGTAAAGATTTTCCCGAACC 4556 30 100.0 34 .............................. GAGATTTTAAAAAGCAAGCTAAAAAAGCAGGTTA 4620 30 100.0 34 .............................. GTCACAACAGCATTTACACGTCTTGGAGCAATAG 4684 30 100.0 35 .............................. TTAACTTCTGTTATAGAAGTAGAACTTTCATTTTC 4749 30 100.0 35 .............................. TCTATTGGAATAGCTCTATCTTCATTTAATCTTCT 4814 30 100.0 36 .............................. TCTGTTAACACATTTGTATAAAACTTTACAATATCT 4880 30 100.0 34 .............................. GCCGATATTGTTGATGGTCTTTGTTATGTTGATA 4944 30 100.0 34 .............................. AGCCTACACATTCTAAGCCTATTCCAAAAATCCA 5008 30 100.0 36 .............................. GGTTTATTATTCTTACCAGGCACAATACCATATTCA 5074 30 100.0 37 .............................. AATCCATCCTTGCACTCTTGGCAAATATCTTCTCCAT 5141 30 100.0 35 .............................. AAGCCAGCATCTAAAGTATTACAGGCAATTTATAG 5206 30 90.0 0 .................T.....G.....G | G [5233] ========== ====== ====== ====== ============================== ====================================== ================== 14 30 99.3 35 GTTTAACCTTAACATGAGATGTATTTAAAT # Left flank : AAGGCAGAGAAGAAGGAGAAAAAATTAAGGCGCTAGAAATAGCAAAAAATTTACTAGATATCTTAGATAATAAAACAATAGCAATAAAAACTGGATTAACAGAAGAAGAAATAGATGCTCTTAGAAAAAAAGAAGTTAATTAGTGTTTTTTAAAAACATTTAAGATTTAGTTATCCTTGACAAAGTATCCCATTTAAAGAGTTATAATGATTTTTTTAATTGTTATAGCTCTTTATTTTTCTCCGAAAAATAAAGAGATTAAGCTCAAATTTACTTTAAGAATTGTAAAAATAAAGTAAGTTAGCTATAATATTAAGCATTCTATTTTACCAGCCATAAATTTATATAAAATCCCTTAATCCATTGAAATTACAGCGCTAAAGTGACCTTTTAAAAATTTTCTGAAAATTTTATAAATGGCTGGGAAAGTTTCATTGAAACCTTGAAGTTTCAATGCCTTAATGGTATTATTGATTTTAGAGAATGAGGATTTTACTATG # Right flank : GAAAAGGGCATGCTAATAACTAATAGAATGGCTGCAATGATTGGTTCATTGCAAGAATAAATATTAAAATGTATTATTGAAATTGTTTATATATAATGGGGGAAAAAAATGACTGAAATACAAATGTGGAATGAATATATTAAAATTAATACTAATGCAAAAGAGTATCAATCATGGTCATTTGGTGGAAATACACCTGAAATGCCAAATTTGTTGGCTGAATTAGTATTAAAGGGGATTAAAACTGCAACTGCTAGTGCATATCCTTGTTATATTGCAGAAAATGCTCCATTACCACCAGTTGGAGGATATAATTTGATATTAAATACAAAAGGTGAGGCTATTTGTATCATAGAAACTACAAAAGTATATACAATACCATTTAACCAAGTTAAGGAGGATCATGCGTATAAAGAAGGTGAATTTGATCGTACACTTATATCTTGGAGAAAATGTCATTCTAAATTTTTTTCTATGGAATTAAAAGAGATTGGTCAAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 494-72 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQSX01000099.1 Clostridium botulinum strain H61 Cbot_71_contig_74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 493 30 100.0 37 .............................. GGAATTAGAAGAAAAAAGCCAATCAATAAAAGATATT 426 30 100.0 35 .............................. CTAGTAGTCTTTAAAGGTTCATCACCTAATTCTAT 361 30 100.0 36 .............................. TATGAAGAAAAATCAGCTCCAACAAATAAGTTTAAT 295 30 100.0 35 .............................. TAAATAATATGGATAGAGATATTGCAGAAGGTTTA 230 30 100.0 36 .............................. ATTAAAACTTGCCACTCAGGATATGTAAATGCTATT 164 30 100.0 34 .............................. TTATCTAAATTAAATACAACTACAAAAGTAGCTA 100 29 93.3 0 ......................-.A..... | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.0 36 GATTAACATTAACATGGGATGTATTTAAAT # Left flank : TGATGAGTAAAATTAGTAATTATAATTATGCTTTTGTTTTTTATGATGTAAATGAAAAACGTGTAAATAAAGTTTTTAAAGTATGTAAAAAATATCTATCACATTTTCAAAAATCTGTATTTAGAGGAGAAATGTCACCATCTAAATTAATAAGGTTTAAAAAGGATATAAATTCAGTAATAGATAAAACTGAAGACTTTATATGTATAATAAAATTAATGAATGATAATGTTTTTGGAGAAGAGACATTAGGGGTAACATCAAATGCAACAGGAGAGGATTTAATAATATGAATTATAATAAAATTATTAAATAATTCTATATTTTTACCAGGTTATTATTCTAATGAAGTCATTTAAAAGGTAGGTAAACACAAGGATTCAGCAATGCTGAATAAGGTTTATTTAATATGTAAAAATCACTTGGTAAAATTTTTATAATATGTTACTATTACTGTATTAGAGAGATTTTGTTATTTTAAGAATGGCTTATTTTCAATG # Right flank : TGATACGATAAGAATGTAAGGAAACGATCATATAAGAATGTACAAATTAGTTTGAATAAATTATAATTACTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 10863-10439 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQSX01000099.1 Clostridium botulinum strain H61 Cbot_71_contig_74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10862 30 100.0 37 .............................. ATAGTTACACGTCATTTTTTACGTGTCATTTTTTCTA 10795 30 100.0 35 .............................. AAAGTGGAGTATATTAGATTTATTAGCTAGTGGAG 10730 30 100.0 36 .............................. TAGATGAAGAATGGCAGGCAATAACAAGAGGTTTAC 10664 30 100.0 37 .............................. TTTGTCCTTCACTCAAATTAGACATCCAATCAGCTAT 10597 30 100.0 35 .............................. ACTCCACGTAGTGCCGTAGGGAAGGGTTTACTATA 10532 30 100.0 34 .............................. AATAGAAGCTTTTGAAAAGCATATGGAAAGAGAA 10468 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.5 36 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : TTCTTATCGTATCATTTATACGGCGAAGGTATGTTTTTTTAAAAAGTATGCTT # Right flank : AATTTTTTAGAGTATTTATTTTTAATAAAATATCTAGAAATAAAAAAGAAATATTATAATTATAAAAAAGAAAGAGGATGAAAATTAAAAAATTACTGTTGATTGGATAATAAGATAACATTAGATATAACAAGGTAAGAAGAATGGATTAAACAAGAGAAATTAGATATAATAAGAAATTTATACTAAATACTTTAGACAATAAAACATATAGAATAGCAATAAAATTGAGTTGATAGAAAACTAAGAGATGATCTTGGATGAAAGAGCATAATTAATGTTTTGTAAAAAATGAGGTTGTACTAATTGTGTTTTTAACTTAATTAGTACAACTTTTTTGTATCCTTAATTATTTTAAAATAATTAAGGATTATTATTGTATTTAGAATACCACCAAAGTTAAGTGTTTCACAATTTATGGGATATTTGAAAGGAAAAAGTTCATTGATGATTTTTGATAGACATGCAAACTTAAAATATAAGTATGGCAATAGACAGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [91.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 15547-17277 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQSX01000040.1 Clostridium botulinum strain H61 Cbot_71_contig_78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 15547 30 100.0 36 .............................. GTTGAAATTAGATTATTTTCTGTCATTCCTTTAAGT 15613 30 100.0 34 .............................. AATTCAAAATCTATTTCGTAGTTTAATGAATCTC 15677 30 100.0 37 .............................. TCAATTATCTTGTTATATTATGGTAACAAAATTTTTA 15744 30 100.0 35 .............................. AAAATTTGCTAGTAGAGTAAGACTAGGAAAGTTAG 15809 30 100.0 36 .............................. GGAACTGGATAGTTCGCAAGATGAAGAAAAAAGAAA 15875 30 100.0 34 .............................. GATTTTTATTTTAATTATAAGTGGAACTTAAAGG 15939 30 100.0 36 .............................. AAAAAAGAGTTTAGAAGTATTATAGGGATTAAGGAT 16005 30 100.0 35 .............................. TATTAACACTTTGTTGCAACTTACAATTACGCAAT 16070 30 100.0 36 .............................. AATGTAGATGACCAATCAAGTGAAGTTGCAATTTTA 16136 30 100.0 35 .............................. TCTACACCAGCAATTGCATAAGTTTTTTTTGGAAA 16201 30 100.0 36 .............................. GAAATAGATAATATTAAAATTGAAGATATTAACTGG 16267 30 100.0 36 .............................. GCGTCCATATATTCTAGGTACATTACAAATAACTTT 16333 30 100.0 35 .............................. TTATGTAGAGATTACATAATTTAAAGTAGACATAA 16398 30 100.0 36 .............................. TAACTGTACCTACTCCTGACTTTGAAGAACCGCAAG 16464 30 100.0 37 .............................. ATAATAGCAGTATCTTCACCGCCACTTATTACCAAAA 16531 30 100.0 34 .............................. GATTTTTTATCAAAACAACTAAAAGAATTAAAAA 16595 30 100.0 36 .............................. CCGTAGAGAACCAAGAGAAATAAATGAAAGAATCAC 16661 30 100.0 35 .............................. AGGTAATAAAAATCTAAAATTAGCAATTGAAAATG 16726 30 100.0 33 .............................. ATGTTGCGAATGTCTTTGCACTTGTTACTGCAA 16789 30 100.0 36 .............................. TGTTTTAATGTTCCTTCAACTCTCTTTGCTAATATT 16855 30 100.0 35 .............................. GAATCAACTACAATCCCTAATCTAGTTAATAAATT 16920 30 100.0 36 .............................. CGTATTGATATAAAATCTATATTTAATAACTTTAAT 16986 30 100.0 34 .............................. AGAAGTACAAATTAATTAATTGACTAAAAAAAGA 17050 30 100.0 36 .............................. GTTAGAATTTATGTGGTCTGAACTTACTGGTGAAAA 17116 30 100.0 36 .............................. TAATCTAAATGTATTGCTAATTCTTTCGCTATCTTT 17182 30 100.0 36 .............................. AATTCTAGTGTCTGCTGTTCCTTCATCCACCGACTA 17248 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 100.0 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : AGACAGTGCAGAAGATATATTTAATAAAGTTAATGATTATATTTTAGACGGAATGCCATGCGATAGAGTAAATGAAATTATAAATAGCAATGAAAATTGTGTGAAATGGACTAGAAGAATTTGTGTACATAAAGAAATTTGGGATAAAGAAAGTGGAAATGTAGAGTACTTTTATTTCCTAAGGAGTTTATGGATTAAAGCTTTTGTAAATGAAATAAATACTGAATTTGATTATTTAGAAGACAGTAAAGGGGTAAAATCTATAAGAAGAAAATAAAGATTTTTATAAAAATATACATTTGTAATTTAAGACAAGCTTTATTATTTTACCAGGCAATTATTTTAATGAAATCCTATTAAACCTAGATAAATACAAGGATTATATATAATACAATAGGTTGTTATCAATATTATAAAATCACTTGGTAAAATATTGATAATATGTTACTATTACTGTATTAGAGCGATTTTATTATTTTAAGAATGGCTTATTTTCAATG # Right flank : AAAAAATAGTGCATTAGAAAGTGAATATAAACATGATTAACATTAACATGAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //