Array 1 68045-68951 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIN01000077.1 Actinomyces sp. Z5 NODE_103_length_96345_cov_188.961441, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 68045 37 100.0 37 ..................................... CGACAGCGACTCGCCACAGGCGACGATGATGACTGCG 68119 37 100.0 35 ..................................... AGGTCCTTCCGGCGCGAGTCTCATAGCAGAGGAAG 68191 37 100.0 36 ..................................... CTGAGCGTCGATGGCGCTCCGGGCCGCCAGGCGCTC 68264 37 100.0 35 ..................................... GCCCCGGAAAGAAATTCGAACCCCTCAGGCATAGG 68336 37 100.0 36 ..................................... TGTGCGACCGCCGCGTGCCGTGTCCGCCTCAAGCTG 68409 37 100.0 36 ..................................... CCCAATTCAAGTCCAACCCGTACGTCGGAATGTCGT 68482 37 100.0 36 ..................................... TGGTAGTCGACCGCGACCAGGTCGCCGGTGTGCATA 68555 37 97.3 37 .................................C... GTAGCGCCGTCGCTCCGCGTCTCTGCGTTCAACACAC 68629 37 100.0 35 ..................................... AGCCAGTCGATGGGGGTGATGCCGAGCCCGTACCC 68701 37 100.0 35 ..................................... TCACCATGCAGAAGATGCTGAGGATGTTCATCAGC 68773 37 100.0 32 ..................................... CGTTCTTATCGGTCTTGGTGCGCATGGTTGGT 68842 37 100.0 36 ..................................... GGTGAGCAGCGCTGATGAGGTCATGGAGCAGGTCCT 68915 37 97.3 0 .....................C............... | ========== ====== ====== ====== ===================================== ===================================== ================== 13 37 99.6 36 GTCAGGAAGCACCTCGCACCTTAAGGTGCATTAAGAC # Left flank : TGCTGCGGCGGTACGACCAGGTGTTCCGCAACGGGAACATCTTGGCACCGATTGCGCCGGTGCGGGGCGGTGTTGGAAGGGGCGGTGTCTGAGTAGAAGGTGCAATTGCGTGGGGCGGATATTGGTTGGCGGCTGGTATTTGTCACCCGGAGTTTGAGGGAGTCTCGGGTGGGGTAGGTGCGCTGGGGTGGGTTCGGTGACGGTTGCTGGTGTGGCGTGTGGTGCGGTTGGGATGTGTGGGGTTGGTGTGGTGCTCGCCAGATGGTCACAATTCGGTCTACGGTACAAAGATTGGTGCATTTTGACCCCGACTTTTCTGCATGACTTCGTTGAAAGTTGGTGGCTGGAGGGGGTTGGAGGGGTGTCGGTGGCGCTTGGCGTGTTTTCAACGAAAGGTGGTAGTTTTGGCCTGGTGCCAGTCGGTCTCGTGGGGTGCTTGCGGGGTCGGTGGCGATCTCGCCTCTGGAAGTGGCGGTATGACGCGGTTTCCAGGGGTAGGG # Right flank : CGGCTTCGGCGGCATCATCTGCTGAGCATTTCCTGGCTCTTCGTGCGTGGGGCGTGGAGGGTTGCGTGTCGCAGGGTGAGGAACCCGGTGAGCCGTGGCGGTTCATTGCGCCGGAATTGACTGCCGCTATCCCCGGGACCGGAAGCGGGGGCTGTCTACTACGCCACTTCGGGGTTAACAACGCCGGTTAACGTTCTGCTGAAGGGCTCCGAGGTATACAGCAGAGCGTTAAGTAGCGTTGTTAACGTCCAACCGGCGTAGCAGACTGTCTCGGCCTGGCGCGCCAGGAGACTGCGCCTAGAGGCTTGACCGGGTACGTCCACCCGCGTAACAGTCGCAGCCCGAACCGCCGCACCCACAAGCACTACGAGCCGCTCGGACGCTCCGTCCCTGCCGCATGCCGCTCAGTGCGCTACCAACTCGAGCAGAGCACAGGCCTCCCGATAGGCGGCGTCCTGCTTGGTAATCCGGGTCTGACCAGCAGGGTTCCACTGAACGCC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTTAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 29388-28195 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIN01000088.1 Actinomyces sp. Z5 NODE_124_length_29350_cov_175.606613, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 29387 36 100.0 36 .................................... TAGCGGAGTATCCCGACGCCATGGCGGCCACGCTCG 29315 36 100.0 38 .................................... GCGCTGCGGCCCTGCGCCCACATCGCAAACAGGTCAAC 29241 36 100.0 36 .................................... GTGCGAGCGGCCCAAATCGCTCGCGTAAGGGCCCTA 29169 36 100.0 37 .................................... GCACCGCCTGCCCCTCCTCCGGCAGCGAGCTGATATC 29096 36 100.0 36 .................................... TGAGATCTCCAAGCTGATCGACCGCCTCCAGAACGA 29024 36 100.0 36 .................................... GGTGCGCACCGAGATCCTGCGGGCCGGCGACAGGCT 28952 36 100.0 36 .................................... ATATAGTTGGGGGTGTCAGCCAGCCACAGCCCCAAG 28880 36 100.0 35 .................................... TGTCGAACGTCGGGGCGCTGGCCGATGCGGTCGGA 28809 36 100.0 37 .................................... CGCCATTTTGCTTATGGTGGTGATGCATCGCTGGGGT 28736 36 100.0 36 .................................... GGGCGTGACGGCGTTATGGTTCGCTTGGATAAAATC 28664 36 100.0 36 .................................... CTGAAGGCCGATTGCCGGTCTCAACCGTACCGGTAT 28592 36 100.0 35 .................................... CTGCACAAACTCTGCTAACGAGGTAGCCCCCATGA 28521 36 100.0 37 .................................... GCAGCTCGGTTGCCGCCGCTACCGGCATGGTCACGGT 28448 36 100.0 36 .................................... CGGTAATCAGGCGACGGTCGGCACCGCCGACCCAAC 28376 36 100.0 38 .................................... GGGTGTGGACGCGCTCCACTCTCTCTAAGTCGCTGCTA 28302 36 100.0 36 .................................... TCATGAATGGGCAGACCATCATCGGCTCAGAGTTCC 28230 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 17 36 100.0 36 GCCTCAATGGAGCCCGGCCTTGAAGGCCGGGAAGAC # Left flank : GACTGGGGGCAGGTGCGCCGGCGCGCCCCCGGAATC # Right flank : AGCTCGCAGAATACGCCGCGGCACGTCAACGATTCAACGCGGTCTCGCGAGCGCTGGCTCAGAAACGCCAGATCCGATCGCGCCCCATCGAGCGTCAACCACCAGAAAACCCCGCCATACCGCGAATTCGAGCGCTCCCCAGGAATCCGACCGGCACCCGAGCGCTCGCTAGACAACCTGCGCCTCCCGCGTAGGCAACCCCCGGCGACGCCCAACGAACGTGAAGCGATCCTCGCCGATCTCACCCAGATCCACAATCACCACCGAATCCTCATCCAGGTTCATGATCCTCTCACCGTCGGCGCGCAGGTGGACAAGCTCGCTGCGGGTCAGGTCGCAGATGAATACAGAGTACTGCAGCCGCTCACCGTTGGCCTCCATCAGTTTGCAGATGCGACGCAGCCGCCCCGGCTTGCGGATGTCGTAAGCAATGAGGTACCTGCGTCGGTTCGTCCTCATCGGGTCACCATCGCCGTGTACTCGTCCAACTCCCCCAGCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGGAGCCCGGCCTTGAAGGCCGGGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.70,-16.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 47-871 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIN01000023.1 Actinomyces sp. Z5 NODE_29_length_60417_cov_180.985855, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47 29 96.6 32 ............................T TGGTGTCCGTCCTCGTCCCATTCCCATGGGCC 108 29 96.6 33 ............................G GTGATGCCCCGCCCGAGGCGGCGCCGCACCCGC 170 29 96.6 32 ............................T GGCACTACATGATCCGCCGTGAATGCCATTGG 231 29 96.6 32 ............................G CCCCACCCCGAGTCAAAGAATGGCCGGATCAC 292 29 100.0 32 ............................. GCATTCTTATCCACGCCCAGCGCCCACCGCTG 353 29 100.0 32 ............................. AGATCGACGACGTCCTCGAAACAAACGCGGGC 414 29 100.0 32 ............................. ACTGTCGGGAAGCCAACGCTCTCCCCCGTCTT 475 29 100.0 32 ............................. AGGCGCAAGCCCCCCAGCCGACGCGGCGGCCG 536 29 100.0 33 ............................. CAGCTGCTTTCCGACGCCCCCGCGTTCGCCTCC 598 29 96.6 32 ............................G GGTCGCCCATGCGTCCTCCCACGGGTCCTGGC 659 29 100.0 32 ............................. GCCAGGTACAGGCCGCTGACGAACAGGGCGGT 720 29 96.6 33 ............................G GGACGGCACCACCAACACCGAGATTGTCGGCAC 782 29 100.0 32 ............................. TTCTGGGACCACGGCCGGGCGACGCAGATCGG 843 29 96.6 0 ..G.......................... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.3 32 GTCGACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCGGGGATGATCCCGAACCAGGCGCGCGCGACCCTGCGCTGTCGAAG # Right flank : CACGGCCCAAGTTGAGCTTTCTATGACCTCACTGAACAACGTCGACACCGATGGCAAGCCGAAGCGTTGCTTCACGACGCCCCGAGTGAACGCACCTGACCGGGCGGCATGTCGGCGTCCTCACGCCACACTACGAGCATCGGCTGCTCCTGGTCGGCGGCCGCTACCACGATGGCATCCACGACGTCTCGTGTATACGCCCCCAACTGGTTGACCTCCGCTGTCACCCCAGGCGGCGGCGTGCACCCGCCCTTCTCCCATGTTTGGACCGTGCCCTCGGGTACTGCCAAAAGCTCAGCCATGTGCAGGCACAAAGCCCTTTCCACCTAATCCGTGCGAACGAAGGCGGCTCGCATGGGCGTCAGAAACGCATAGGCAGAGGCGAGTTGGCCTGCCCGCAGCGCGTCACGCGCCAAGTGGGGGCTGGCTCTCGCCTCTGTTCGGGCGAGTCTATTCCACATCCCCCACACGCACACCATCATGACCAGCTCAGTATGCTC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 53363-52966 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIN01000090.1 Actinomyces sp. Z5 NODE_131_length_53288_cov_194.850647, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 53362 36 94.4 36 ..........C................A........ CTTCACACGAGCACCAATGTGCAGCCGGTAGCCGTT 53290 36 100.0 37 .................................... CGACGGTGGCGGAGCCCGACGCCCGGACGGTGGCGGA 53217 36 94.4 35 ................C.A................. ATTTCGACGCTGGTGTAGGAGTCGAGTTGCCAGGT 53146 36 100.0 37 .................................... GTCCCGCGGTGGCCCAGATCGAACCAATGCCCAACAA 53073 36 97.2 36 ..T................................. ATGTGGTCGGCAGCGGCATTGGTGAAGCTCAGCACC 53001 36 86.1 0 ............C...C.A..........C...A.. | ========== ====== ====== ====== ==================================== ===================================== ================== 6 36 95.4 36 GTCTTCCCGGTCTCCAAGGCCGGGCTCCATTGAGGC # Left flank : | # Right flank : GCGGCGACAAAACGGGCTTCTTCGACTCGGGGAGTGGAGTGGGGACGTGACGTGGTGTTTGGCACCTGCGATGTCGGATGCTGGCCTGCTCGCCGGCCACCGTCGACGCCGGGCAGCTTGCCGCTGGCGAGTATTCCGGCGGGCGAAGGCAGGGAGTGTCCAGATCTATGACAAACGATGTAGGAGACGGCACCAGCCGCGGGCAGAACGTTGGAATCATGCGGGTGTCAGATCGGCTCTCGCGGCCGTAGGCGGCGTTTGTCATCGATTTTGACAACCATAGGAGCATCATTCCGTCCCACGGCGGGGCACACACCCCACACCACCCACACCCACTAACCAGAAGAGCCTCTTCACGGATACCACAACGACCGGCAGGTTGTGGGTCTCGGCGCGCTCACGCAACCGGGCCAGCAGGCCGTCTCCGGACACGCGCGGCAGCATGCCACTCCACCCGGCGGTTTCCAGTCTGGGCCGTCTCCGGACACGCGCGGCAACAT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCGGTCTCCAAGGCCGGGCTCCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 13271-12455 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIN01000061.1 Actinomyces sp. Z5 NODE_80_length_13196_cov_148.383606, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================================ ================== 13270 36 100.0 35 .................................... CCGCCGGTCGTGTAGCTGGTGACGTACCCGAACGC 13199 36 100.0 35 .................................... GAAGTAGAAGCCGTCGTCGGTGATTTCGGGATCAT 13128 36 100.0 41 .................................... ACTTCAAGCCTGACCGCGTAGGGGTCGTAGCTGTTGCTCGG 13051 36 97.2 37 ................A................... GCGGCCTCGTCGAGCTCGATCAGCATCGGCACCTCCA 12978 36 94.4 35 ..........T.....A................... CTGGGGCTGATGTGGAACTGACCGCGGCACTCCAC 12907 36 94.4 92 ..........T.....A................... GCGTTGCTGCCCCAGAAGATGAGGTCTCCGGGCTGCGTCTTCCCGGTGAGGCTGCGCGATACTTGGGCGCATGACCACCGCACCGGCATCAG 12779 36 100.0 35 .................................... CCGCGCAGTACGTGCCCGGGCAGCAGAAAGCCCCG 12708 36 94.4 37 ..........T.....A................... CGGGGGTGTCGGAGCGTTCTTATTCGGCCTGAGCCTG 12635 36 100.0 36 .................................... AGGATGGCGAAGCTGGCCTGTGCGTATCCGAGGGCG 12563 36 100.0 37 .................................... GGGCGTCCACCCGAGCTCATCCCAGGCGTCCTCACGC 12490 36 91.7 0 ..........T.....A..................G | ========== ====== ====== ====== ==================================== ============================================================================================ ================== 11 36 97.5 42 GTCTTCCCGGCCTTCAGGGCCGGGCTCCATTGAGGC # Left flank : | # Right flank : CAACACGCCGTCTCCACCGACTACCGGGGCCGGCACTCGCGCTGCGCCCGGGTCCTGTCTTCTTCGGGCCCGGATCGCCGGAACGAATGTCCAAATCCGGCATAAACGATGGCGAGACATCGACTGCCGAGCGACCAAACCGCAAGATTTCAAGGGTCGGGGGAACGCCGATCGCCGTTAAAGGCTTGTTTATGCCGGATTTGGACAGCCCGATGCCGTGAGCGGGCAGTGGGGGTGAGCGACGGCCCGGTAGTGCGGCTGCGGGAAACGGCGGCTCGGAATGCAGCGCCAGGGTCAGGGCTTTGCAGCAGCACTGCGGCTGCAAGAAGTGGGGTGGCTGACGAGGCTTGAACTCGCGACCTCCTGGACCACAACCAGGCGCTCTACCGACTGAGCTACAGCCACCATGGGGCGACGTCGTCGCACCGAGTCGGTACTTTATCGGCTCACATGCGGTCGCACCAATCGGAGCCCCGTGTACTACGTCACCTTCGCTGCAG # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.48, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCGGCCTTCAGGGCCGGGCTCCATTGAGGC # Alternate repeat : GTCTTCCCGGTCTTCAAGGCCGGGCTCCATTGAGGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.40,-15.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //