Array 1 57986-59050 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBX010000031.1 Salmonella enterica isolate 1221_07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57986 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 58047 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 58108 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 58169 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 58230 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 58291 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 58352 29 100.0 32 ............................. TTAATTAATCATTTTGTTTAAATCCCGGATCA 58413 29 100.0 32 ............................. TGTTCGCGAACTGTTCACAAAATTGATTAAAT 58474 29 100.0 32 ............................. TACGGAAACATACGGCGCCCATTGCTTTTTCA 58535 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 58596 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 58657 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 58718 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 58779 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 58840 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 58901 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 58962 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 59023 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 75320-78217 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBX010000031.1 Salmonella enterica isolate 1221_07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 75320 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 75381 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 75442 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 75503 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 75564 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 75625 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 75686 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 75747 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 75808 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 75869 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 75930 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 75991 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 76052 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 76113 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 76174 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 76235 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 76296 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 76357 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 76418 29 100.0 32 ............................. GCAAAACGTCTGCAATGCCTTTTTTAACAAGA 76479 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 76540 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 76601 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 76662 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 76723 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 76784 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 76845 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 76906 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 76967 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 77028 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 77089 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 77150 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 77211 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 77272 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 77333 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 77394 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 77456 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 77517 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 77578 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 77639 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 77700 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 77761 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 77822 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 77883 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 77944 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 78005 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 78066 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 78127 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 78188 29 93.1 0 A...........T................ | A [78214] ========== ====== ====== ====== ============================= ================================= ================== 48 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //