Array 1 21634-22518 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS480694.1 [Clostridium] bolteae ATCC BAA-613 Scfld_02_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 21634 33 100.0 35 ................................. ACTATCTGTCCAATCAAGCAGACACCGGTCATCCA 21702 33 100.0 33 ................................. CCCTCATAGCTCCCATTGAATAAGGGTCACATT 21768 33 100.0 34 ................................. CTTGAAATGCTCCAGCGCACGTCCTGCCAGGTCA 21835 33 100.0 36 ................................. CTTTTTAGGGAAAGTGAGAGGCAAAGGCGCTATATA 21904 33 100.0 35 ................................. AACAAAACTTGCACTGCAGGCAATGGTGGACCGTG 21972 33 100.0 34 ................................. AGCGCAGAGGCCGGAAAATCGTGAATGTGGAGTC 22039 33 100.0 35 ................................. TTCCAATATCTCATTACTTGCTGCCTCGGCCCCCG 22107 33 100.0 34 ................................. CCTATATTATCTGATGTATCAGGGGATAACAGTA 22174 33 100.0 33 ................................. TTACCGGATGTCTGGATTCTGGTAAACCGGTAT 22240 33 100.0 34 ................................. GTCAATGCCGGAACCAATAGGAACCCCGTCACCT 22307 33 100.0 35 ................................. CGTCACATCGTACGTCTGGCAGAATGCGCCTACCA 22375 33 100.0 36 ................................. CCGTGGAGGGCGGCCGTATAAGTCTGAGCCCAGTCA 22444 33 84.8 9 .........................C..TTCC. TTCCGGTCA Deletion [22486] 22486 32 75.8 0 ............A.-A...A..CAA.C...... | G [22516] ========== ====== ====== ====== ================================= ==================================== ================== 14 33 97.2 33 GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Left flank : TGCTGATACTGATTACATATGATGTGAATACGGAAACCACTGCAGGCAGGACCAGGCTGAGAAAGGTTGCAAAGCAATGCGTTAATTACGGCACCCGCGTCCAGAATTCTGTATTTGAATGTATTTTGGATAATACCCAGATGATAAAGCTAAAAGCCATACTGACAGATATCATTGATGAGCAGACTGACAGCCTTAGATTTTACAACCTGGGAAATAAACACACTACAAAGGTGGACCATGTTGGGGTGAGTAAAGGGATTAAAGTGGAAGAGCCGCTGATATTCTGACCTGGCTGCGGGCGGTAAGGAGGTTTCAAATAGTTTGGTGCGAACCAGAAGCAAACATGAATTTACGGGGGGATTCGCACCGGAAAAACTGCACAGTGAGAACGGTTTTGGATGTGTGCAGGGCAGGTTGGCGGTGATTTGAGGGAGTATGATGTGATTTGATTGTGGAAATGTGATGAAGAATTGTTGGTTTTTTTGTGTAGTATTGCT # Right flank : TCCGCCAAATTCAGGATTACGTTTAGTCAAAACATCATTCCCCTTTTTCTAAGAAAACAGTATAGTTTGAATCATAAACATTAGCTATAACTAACAACACGCAACAAGAAAGGTGGGCGAACACCCACCTTTGCCATAAAACTGTTATAGGGTATAAAGAACGCGGGCCTCCCTCACCCTTTCCATGCCCGAATCTCTCTAAGCCCCGGCACCAGCACTTTGGCGCTGGTTTCCAGAATAATCCGTCCTTTTTCAGCCGTGGCGCCTGACGGGTCTCCGCCGATTCCTATGGGTTTGCCGTCTGCTGTTTTCCAGTCCTCGGACACCCAGCCAATGGATACGTTTCCATAAGGCCTCAGTGCCTGATTGTCTTTAAATGCAATTGGAATTCCTGCCTCTGAGGTATCTAACTTTACCAGGGACGGGTCCACGGCCATGACCATGGAGGTTTCCATCTCGCCTCCATGGAAGTCCCAGATATTTCCCTCTGAAATGGTGGC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 285232-285443 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS480669.1 [Clostridium] bolteae ATCC BAA-613 Scfld_02_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================ ================== 285232 32 100.0 26 ................................ GGTCTAAGTAATACCACTGTCCGCCC 285290 32 96.9 28 ...............................C CGTCCAGATAATACCATCTGCCATTAAT CT [285295] 285352 32 84.4 28 G....................CT.A......C CGTTCATATAATACCATTTGCCGTTGAT 285412 32 81.2 0 ................AT....ATA...T... | ========== ====== ====== ====== ================================ ============================ ================== 4 32 90.6 28 AGCCTGCCAGCCGGTCTGCATGGCGCCGCTGG # Left flank : CGGACAAGCGCTTTCCCAAGGCCAGACGCGTCCCGCGCACCTTGATGATAACGCTTCCGCTGCCTTTCTTATTCAATATATTTACAGGCGTCCCCTCATTGACCCCCAGGGCCTCAAGACGTCTGGTAATGCTCTCATCCACCTGCACGCCCGATACAACATACCGGCCGCCGATCTCACACTCATTCAGCTTTTTCTGCATTGATGCCTGTCTCCTTTTGTAGTTACATTTAAACCATATTCATTGTATGCTTAATGCGAAAAAATGTCAATAAAAAGAGTTTGTTATGACAAACTCAATTCAAAAAAAGATACAGCGAATCTCTCCGCTGCATCTTTTCCTGCTTTTTCTCTATATTTCTTTATGTTTCCGTTCTGTATATTCGTATTAAGATTTACTGCACCCAGGCTCCTGAACCATCCACATATTTTCCGTCCGGCGTCCATGTATTATAATACATGGCTCCATTGGTGCCCAGATAGTAATACTTGCCATTAAT # Right flank : GAAGGGTTCAGATAGTACCAGGTCCCATCCAGCTTCTGCCAGCCGGTAACAATATACCCCTTGTTATTGAAATAATACCATGCGCCGTTAATCTGTTTCCAACAGGAGGCCGGATATCCGCCGGTATCATACGCATACCATACACCAGTACCATCCTGCTCCCAATGTCCGCTTCCGCCATAGCGGCCAAGCTCATCCTCATCAATATACAGGGAGTTGGAATCCTCGGACCATTCACCTGTCTTATTATTGTAACGGGAAATAGCCCTTACACGGAAGGTATAGTCTCCCTCCCGGTTAAAATAACCTGCAAAATTATATGAGGTTCCTGTAGTGCTGACCGTAGTGACTGTCTTGTCGTCGCGGAGCAGCTTTACATCATAGCTCTTAGCGCCTTCAATCTCCTCCCACTCAGCCGTGGTATCATTCCATTCCAGCTCCGACGCACCCTGAAGCTTGCCGCCGATACGTTTTAACTCAGCATACACTTCAATGTACTG # Questionable array : NO Score: 3.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:-1.5, 6:0.25, 7:-0.09, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCTGCCAGCCGGTCTGCATGGCGCCGCTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTGCCAGCCGGTGAGCATGGCGCCGGAGG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 225354-226793 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS480671.1 [Clostridium] bolteae ATCC BAA-613 Scfld_02_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 225354 33 100.0 35 ................................. ATAAAGCTGTGCCTGGGCGTTCTTTTCGGCCTCTG 225422 33 100.0 33 ................................. CTATATCCCTGCTTTATTTTGGGCGGCTCCGTC 225488 33 100.0 33 ................................. TCCCCGAACCGGATTACCTGGCTGTTAATCCCG 225554 33 100.0 35 ................................. ACTAAAGGAAATATGTTTAAGGTTGGGTACCATAT 225622 33 100.0 33 ................................. AAATACTCCACTGTGCGGTCCACATCCACGGAA 225688 33 100.0 32 ................................. TCAGTCCGGCACCCGGTTCATATGGCTGCAAA 225753 33 100.0 34 ................................. TCCGTTATTAGGTTATTTGTAGGTGTGTAACCGT 225820 33 100.0 33 ................................. ATTTGTAAGATAATCAACCAAATTTTGCGCAGA 225886 33 100.0 35 ................................. ACCGATAGCAGAGCCAGCCACATCAATATGTATAC 225954 33 100.0 33 ................................. AACGGTCTGTGTGCCAGCAGTTACAAAATCTGC 226020 33 100.0 33 ................................. ATCAGATGCTGCTTATCATTTTAAATCCATCAA 226086 33 100.0 36 ................................. GTCAATGTAATTTATCAATCCTGCTTCCCGCATATC 226155 33 100.0 33 ................................. CATGTTGATTATCAGATTATGAATCAACTGTAT 226221 33 100.0 35 ................................. GCCTATAGCAGAGCCAGCCACGTCCACATGAATAC 226289 33 100.0 33 ................................. ACGAAAACCACAATCATCACAACCGTGAATATA 226355 33 100.0 33 ................................. GTAAGGCCCGTGCTCTATGAGAAAATCAAAGAG 226421 33 100.0 35 ................................. ACCTTCCACCTGCGCATCCTTAAAAGCTGAATGCA 226489 33 100.0 36 ................................. GTAATGTCCTCCCCTAAAAGGGGTAACTGAATCAGC 226558 33 100.0 36 ................................. AACATAAGCATTTACGGCTGCGAGTATGTCTGCCCC 226627 33 100.0 34 ................................. CTATATGTCACGTTATCTCACCTCCGCTCATAGT 226694 33 100.0 34 ................................. GATATATAGTATAACAGACTAAAATGTATAAATC 226761 33 81.8 0 ......................CA..CCA...G | ========== ====== ====== ====== ================================= ==================================== ================== 22 33 99.2 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : AAGTTCTGGAACTACCTGAAAAATGTGGATTTCTGGCAGTGGCCGGAACAGCGGTGGCCCTGAAGGCGGGAAAGCTGGCTGCTGTAATGGAACGTCAGGGCAGAGTACTGCGTATTTGCGATGCCGAAGATATGAAGGAAGTGATGGCGGAATTTGTCCGTGCGTTCAAGCAGGGAGCCATATATCCGGAACAAAAGAGGCTTGTATTGAAAGAGTATCCGGCGGAGGCGGCAGAGGCTTTGCAGCATGCAGGATATATGCGGGAAATGAAGGATTATGTAATATATAAGTAGAGTTGGTTTCTGTGAGTTGGGAGCCCTTCAAACCAGGTGCGAATGCCAAGCTGACATGAAATGCCAGGGAGATTCGCACCTGAAAAACAGAGGAAAAGGCCGTGAAAGCGGGCTGGGTGAATGGACTGAATTGGTTGAACTGGGGAGAGAAGAGCATAATGCATAAAATGTTAGGGGGGATGTGGAGTAGGTTTGGATAATTTTGCT # Right flank : GATACCTGTAAGCCCCTAAATTAATGCAAAAGGAAAATTGCTCCCCGCGTACCTAATGCATTGAAAGCAGCCATAATTATATATTGAGAATTCGCAAAACATCAGTTAAAAGAACATATTAACAGTATCCCGATCAACAGGGAATCCGTTAAGCGCATACCCCCCTCCGTAAAAAACATCCGCCCCAAAAAACACCAACATAAACAAAGGAGTAACACATATATGATTGAAATAATCTATAGAGACAAACGCTTTCTTGTTAAGGGCAGCTTTTCCATAGGAATAGCAGGAAACTATGTAAATGAGGATTTTGGGGATGAGAATATCATGATTAACGATACGTTAGAGGAAATCATGAAAGAATTGCAGGATGAGGACTCCTTTTGGTACAAGCCGCTGTTTCCCTATCTTAAATCTGAGACAGCAGACAGTGGCGGAATAGCCAGAGGTCTTACTGCGTACTACAATCAAAAGGAAAAGGAAATCAGGGAGAATGAAAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //