Array 1 10149-9814 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QRAJ01000001.1 Bifidobacterium mongoliense strain BMONG18 Contig_1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
     10148	    29	  75.9	    33	CCG...AT...........T........C	ACTGAGAAGTTGACTGTGGAGTTTCAACTTGGG	
     10086	    29	  89.7	    32	ACG..........................	ATTCCCGGAGGGCTCCCAGTCGAGCACGGGGA 	
     10025	    29	 100.0	    32	.............................	GTTACTATTACCCGTGACAATGCCGCCTTTAA 	
      9964	    29	 100.0	    32	.............................	CTTAAAAGCGACATCGCCCTGCTGTAAACCGT 	
      9903	    29	  96.6	    32	............C................	CCAACTGCAACCCAAGCACCTATCGTGGCTAC 	
      9842	    29	  86.2	     0	.......T....C..........A..T..	|                                	
==========	======	======	======	=============================	=================================	==================
         6	    29	  91.4	    32	GTTTGCCCCGCATTCGCGGGGATGATCCG	                                 	       

# Left flank :   CGCCTCGGCGGCGCTGACCTCCGGCGGCTTCGTGATTCTCAATACGGTGATCACCGCTGACCTATTGGCCGAAGGCTACGCCCGCGATGCGATCCGCGCCGTCCAAGACGCCCGCAAGGAGACCGGACTGGACATTTCAGACCGCATCTCGCTGCGCTTGGTCGTCCCCGCGGCCGACGCCCCCAAGGCCGAGCAGTTCCGTGACCTCATCGCGCGTGAGACGCTGGCGACCAGTCTGGAGATCGTTGCGGATGAAGGCGCGAGTGAGTTGGGCGTGACGGTCGCGAAGGTCTGAGCATACCTGCTGCGGTGGCGAATCACGTGGTTTGCGTGGATCCGTCACCGCAGCCGCAAGCGCGTTCGGCCATCGTGGACCAAAACCTGTGCAGTCCGCGGACTCTCGTTGTCGGATACAGCTCCGTCACGTGGCGTTCGTTGCATTCTTCGCAGGGGTGTTTGCCTCTATACTGAGAATGTCATCCAAGTGAAATCATGAAGTT
# Right flank :  ACCGGTTCACCATGAGCCGGAGCGAGAAGACACAGATTGTGAGTCTGCTCACCCAGTGTGTGGCACGGTGTGATTCCGCTGATTGTGGGATAATGGAAGGTACAAGTAGGGGAGGGTGCAATGGATGAGCGAACGCGTCGGAGCTTGGTTGTTCGTGATGGCATGCATTCCGCCGAGCTTGAAGGCGGGCGTGTCACTGACGCCTATCGTCGTGATGCGTAGGACTGTATCGATGGCCTCATCGATGAGGATGGGCTGATACGGCGTACTCGTGTCCGGTATGGGTTGGAAACAGCATGACCGGTGATACGGGCATTGACCCGTATCTGATTTCTGGCGCCAGCGTGCTGCGCAACAGGGTGAGTGCCCGTAGCAGGCAGGCGTTGGCTGACGCTGAGAGTGATCTGGTCAATGTCCGTTACAGCAAACTCAGCATCATGCCCCTGACCGCGTAGGGTACGGTTAGCCAGTTGCAGTGGATCCATCATTATCTCTTCCAG

# Questionable array : NO	 Score: 5.52
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTGCCCCGCATTCGCGGGGATGATCCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-2.40,-3.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [5-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.55   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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