Array 1 1094-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQB010000038.1 Listeria seeligeri strain FSL L7-1639 NODE_38_length_1093_cov_25.904528, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1093 36 100.0 31 .................................... TCTTCCCCAGAGTCAAAAACTGCCTTATTAT 1026 36 100.0 30 .................................... TCAAGGAGAAGACAGGATTTATCGTATTGG 960 36 100.0 30 .................................... TGTCGTTGCACTAGTATCCGTATATCTTTT 894 36 100.0 30 .................................... CTTTCCATCGAGAAAAGTAAGCGACTATTC 828 36 100.0 30 .................................... GAGGCAACAAACATCCTCCACGTAACAGCT 762 36 100.0 30 .................................... GGCAGGAAGGAAGAAGTCACATAAAAATTA 696 36 100.0 30 .................................... CTGGGAACTGGACCAACGAATAGTTGATAG 630 36 100.0 29 .................................... CAAGTCGCTTTTTCTTGTCCCACTCTAAT 565 36 100.0 31 .................................... TGGTTCGTCCGTTTGTTCAATCCAAAAACAA 498 36 100.0 30 .................................... CCTTGCCTATCAGCTAATTTTTTACGTGCA 432 36 100.0 30 .................................... CTCGTATTCCACACAATTAACACTTCTGAT 366 36 100.0 30 .................................... TCAACTACAAACATTAAATGATTCGCATCA 300 36 100.0 30 .................................... AGGGAAACCAGAGTTTATTTTCAACTCGAA 234 36 100.0 30 .................................... CAGCTAAACCATCACGCAACGTTTTTTGTT 168 36 100.0 30 .................................... CCTGTTGCAATGCAAGCCCTGTTAATACGC 102 36 100.0 30 .................................... CTGTGTGATACATTTTCACTCGTCGGTACC 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 100.0 30 ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Left flank : | # Right flank : T # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 6455-5296 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQB010000014.1 Listeria seeligeri strain FSL L7-1639 NODE_14_length_77309_cov_33.051805, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6454 36 100.0 31 .................................... CATTCTTCCGCTTTGTCGCTAGTGTAGGTGA 6387 36 100.0 30 .................................... TATGGAACCAACTATCGCCTATCGTTTCTA 6321 36 100.0 30 .................................... CAAACTTTTTTATTTCTTTTTCTGTGAATC 6255 36 100.0 30 .................................... AGAAGATTACTTACAAAAAAGCATTCTTCC 6189 36 100.0 30 .................................... ACGGACGGTGTAGGTTTTGTCAGTGATACC 6123 36 100.0 30 .................................... TGTCCTTGTTTAATCCCGGTTCTAACATGA 6057 36 100.0 30 .................................... TTTTGATATCCCGGAGACTATCGACAAAGA 5991 36 100.0 30 .................................... TACCCGGAATTGGAGAATTTGGGTCATCAT 5925 36 100.0 30 .................................... TATCTCCCAAATATAGAGGTCTTATCGAAC 5859 36 100.0 30 .................................... CATGCTGATGTTTGGACTGATACGGAAGTA 5793 36 100.0 30 .................................... TTCGTATAGATTAATTGCATCGGAGTCCAA 5727 36 100.0 30 .................................... CACAAAATGCTATCAACTAGAAGGTTATGT 5661 36 100.0 30 .................................... CTCTTCTTTCACTTTCTTCACTTGTCTGCA 5595 36 100.0 30 .................................... AGTGAACATGATGTAGAAGTGAACGTCTTG 5529 36 100.0 30 .................................... TCTAAGAAAAACAGAAAATAATCTTTTAAA 5463 36 100.0 30 .................................... GTTCCCCTATCTGTTTTAGTGCCTTCTCTG 5397 36 100.0 30 .................................... TACAATGAATAATCATATTACCGACTTAAC 5331 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAACTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGACTCGAATGCTCTTTGAAAATAAAATATATTTTAGTTAAACCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : AGAGAGGGTGAAATATCCTTTACATCTATTTTTTTCTATATCTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTTGCTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAATGCCAAAAGCGCAGTAATGGCAAAACATGCGCATCCGATTATTCCTAAAATATGACCAATAATAGAAATCCCGGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTGCATAAAAGAAAGCACCGACTCCGCTTGTTTCTGATCCATCTCCGCCTGAGAAACTTTCACTGAAAGCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 24713-23969 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQB010000016.1 Listeria seeligeri strain FSL L7-1639 NODE_16_length_65554_cov_29.769385, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 24712 29 100.0 35 ............................. TAATACCACTTAGACAAGTTTTCACAAGTAAAGTC 24648 29 100.0 36 ............................. GCATTAATATTTACGTGATTATAGTCAATAGTGAAC 24583 29 100.0 36 ............................. ACTGCTTGCGTTTTTCAACAACTCGACATGGCAAAG 24518 29 100.0 37 ............................. TGACACGTGCAGCAACTGCTTTAAAGTCCGGATTTTC 24452 29 100.0 36 ............................. AACCTATCCGGGGCAGTGGTTAACAATGTGTTTGTC 24387 29 100.0 35 ............................. CTAACTCTTGAATAGCGCTCTGGAACTCTTCGTTG 24323 29 100.0 38 ............................. TGTGTAAACGGAGAAACGTTTGAAGTAGAGTTATTAAA 24256 29 100.0 35 ............................. TTTTCAACAATTTCACGTAAATCTTTTTTATAAAT 24192 29 100.0 35 ............................. GCTTGCTGAACGTTGTAATATAGCGTTCAAGCAAC 24128 29 100.0 36 ............................. TGACACAGAGGGGGAATTTGAAGGACATGATATTAC 24063 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 23997 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 99.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTCGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCTGGAAATGCTACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTTGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAATGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGAACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 3047-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQB010000015.1 Listeria seeligeri strain FSL L7-1639 NODE_15_length_70862_cov_25.311139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3046 36 97.2 30 ..C................................. CCTAAAGTGTTGTATGTTAACACATCAACA 2980 36 100.0 30 .................................... TGGTTGCGTGGTGACTACGGGGACATCAAG 2914 36 100.0 30 .................................... CTATCTCGTCCCATGATTAGTTTAGCACTT 2848 36 100.0 29 .................................... TAAGCAATCCCTATAATTAATACTGGAAA 2783 36 100.0 30 .................................... CGCGAGGTTATGAATGCAGCCGATAACTTT 2717 36 100.0 30 .................................... CCGTTGAATGCAAAAAATTTAGGCACGATA 2651 36 100.0 30 .................................... ACCTCTCTGGTAGTGTGTACATCAATGGTA 2585 36 100.0 30 .................................... TGATAGACCACTATTTTACAAAGACTTTAT 2519 36 100.0 30 .................................... ATTCGCCTTCAGGTAAGCTGTATTTTTTCG 2453 36 100.0 30 .................................... CTCATGAAAACAGACGTTGATAGACTGAAA 2387 36 100.0 29 .................................... AATGTTTTAATTGCAAAATCCTTTTTATT 2322 36 100.0 30 .................................... ACCGGGACAATTTCAATACCTGTAAATCTA 2256 36 100.0 30 .................................... CGATACAAAGATACATGAATGTGCCGATTA 2190 36 100.0 30 .................................... CTCCACCCCTTCATCAAGAAGCGCCTCATC 2124 36 100.0 30 .................................... TAGTTTTACCAGCATATGTTCCAGAAAAGA 2058 36 100.0 30 .................................... CATTTAAACTAGCTAAAGCAGACCTTTTTA 1992 36 100.0 30 .................................... AGACCGCGCCATACACTACCTTAATAAGTC 1926 36 100.0 30 .................................... CATCTGGCTCCAACTTTTGCTCGAACGGTT 1860 36 100.0 30 .................................... TGATATCGAAATTATTTGCGAACCGGATAA 1794 36 100.0 30 .................................... GGTATCTGGTCTTGTTTGACCATTTTATAT 1728 36 100.0 30 .................................... ATATCGAATCGTCACGATATACGCCCGGAA 1662 36 100.0 30 .................................... TGAACGCTTGAGTCTTAGCTTGAGCTTGTA 1596 36 100.0 30 .................................... AGACCGATGCTTGATTCGCCAGCCATCTTG 1530 36 100.0 31 .................................... AGATTTAAGCGGTGCAAAGTTGAATTTCGCA 1463 36 100.0 31 .................................... TTGCAGCATTGAAAAAACGGATTGATAAAAA 1396 36 100.0 30 .................................... GATAAGCAATACCGTCAACTGTATACCGAT 1330 36 100.0 30 .................................... CACTTGCACGATATATAAATTTGGGTGTAA 1264 36 100.0 30 .................................... TAGTTCTTCACATTTAATTTTCATTATTTT 1198 36 100.0 30 .................................... TAATAAACATGTAGATAACAATCGCTATCT 1132 36 100.0 30 .................................... ACTGCGTGCTAGCCAATACGCAGTATCATT 1066 36 100.0 30 .................................... TTCAACGCCGCGGGTGGTATTATGGAAGGT 1000 36 100.0 30 .................................... TACCAACCCCTTAAAGCCCGCTGAGCTATC 934 36 100.0 30 .................................... CGGTATGCCCGTGGAATAGACTTGGAGGTC 868 36 100.0 30 .................................... AGATATTTCCGGATTTTGTTACTACTTTTA 802 36 100.0 30 .................................... AGGCGTTTGAAATTATATCATACAGAAACA 736 36 100.0 30 .................................... TTTGAAGTCTAGTTATAATAGAGTCTAGTT 670 36 100.0 30 .................................... CATATGCGCAACTCAAATTGTGTTACTTCA 604 36 100.0 30 .................................... ACCCATTGCAAGAAGCTTTGAGATACGACC 538 36 100.0 30 .................................... ATGACTTGCTGACAGAAATGTATGTCTATT 472 36 100.0 30 .................................... TACCAGCCGTCTGTGGGATACCACAGCTCT 406 36 100.0 29 .................................... GATGACCTCGCCAGCAATACCGTCGTTGA 341 36 100.0 30 .................................... GCGTCGACTGTACGCCACAGGCGCGAAACA 275 36 100.0 30 .................................... ACCTGTTCGACAACTGTTTTCCATCAGCGC 209 36 100.0 30 .................................... TATCTAATTGAGGACACGCAAAAGATTACG 143 36 100.0 30 .................................... CCTAAAGCTACTCCTAGAATAAAACTAGTT 77 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 46 36 99.9 30 ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Left flank : ATTCCCATTTTTCCGTTTTCTATTTCTTCAGTTAGCTAATTTTGAAAAAATATTATATCTGACTCAATTACTACGTTCATTATAGTTATAGAGCTTCACCCTTGCAAGCGGTTACAAGTATTTCGAAAACGGTTTTCGCTGGACGAAAAAAATGGATATGAGATGAAATTAATGAAAAGATGCAGTTCTTTAGATGGAAATACCCCTAGAGATGGTTGTTGACTCTAGGGGTATCTCTTTATTAATTCGTTTTCGGAGCAGCTATTTTTTTATTGTTCAACTACTTTTTAATTTATATTCTAATTTTTCATCAGATAGATTTGTGTAGATAATTAGATTTTGACTGCGTTTTTCCAGAAAATATTGCAGGTCTTCATCACACTCCTACTTGCCAACTTTTTTAAATAGAGACCCGGTAATGGTTTCAACTCGTCATCGAAATAAAAATACATTTACATATTTTCTTCAGTCACCTAACATCATTTTTATTAACTGTTGAA # Right flank : TTCTTCCCCAGAGTCAAAAACTGCCTTATTATATTTCCTAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //