Array 1 8697-10187 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIRS01000004.1 Campylobacter concisus strain H20O-S1 NODE_4_length_147836_cov_78.3208, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 8697 30 100.0 36 .............................. GGGCTAAAGTTTGCTGACATTGAAATATCAAGCAAA 8763 30 100.0 38 .............................. AGCTCTTTCTTTGAAACAATGGGCGTTAAAGATGAACT 8831 30 100.0 37 .............................. AAGAAACTAAAAAAATTAAAAATCATTGCAATAAATG 8898 30 100.0 35 .............................. ATAACCGAGTAGCTAGTCTTAATGATTATGCCTTA 8963 30 100.0 35 .............................. AACATGCAAATCGTTAAATCTGACTATGATTTAAA 9028 30 100.0 37 .............................. AATCAGATAGAGCCTTTTGAAGTGCTAAATGATAATT 9095 30 96.7 35 .............A................ CATCTTGAACCTTAGAGCCAGTAGGTGTAGTAGTT 9160 30 100.0 36 .............................. TCGGAGCAATCAGCATAACAAAGATTGTTTTCAACA 9226 30 100.0 39 .............................. ATATATCCGCCTGCAAAAAAAAAGGGCGACCATGTATAG 9295 30 100.0 36 .............................. ATGCTTGATAGAGAGCTAGACAATTTTACACACTAT 9361 30 100.0 36 .............................. TCAATAATACCCAAGCAGGCATAGCTCAAACTTACT 9427 30 100.0 36 .............................. TTAGCTCGCTCTTGCCTAGCTGTGAAGCCCATAATA 9493 30 100.0 37 .............................. GATAGAGTTGTAGATGAAATGAAGCAGCAAACCGCTG 9560 30 100.0 35 .............................. TTTGGTATTTGGCAGTAGCAGCACAAAAGAGGCTG 9625 30 100.0 36 .............................. TGTGGCTCAAAGCATCTTATATAACTTCGATCTATA 9691 30 100.0 37 .............................. TGGTAAGGTAAAAGCTACTTATGAGGCTGATAGGGAT 9758 30 100.0 37 .............................. TCATCGCCCCTTTGGCGGTCGCTCATCAAAGTATCGA 9825 30 96.7 36 ......T....................... AAAGCGGTGCAAAACTCGAGTTATAGTTATGGTGAT 9891 30 100.0 37 .............................. CGAAGCCTATCAGGTCTTAAGCGATGAGCAAAAGCGC 9958 30 100.0 36 .............................. TTGGAAATGGAAAATTATATAATGTAACTGGTTCTA 10024 30 96.7 38 ..................C........... AAGATGAACTTTGAGAAAGGATATCTTCAAGGATTAAA 10092 30 100.0 36 .............................. AAAAAAGTTCAATAAAAAATGCTATAATCACGAGGA 10158 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 99.6 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCTCGTATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGAGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAAGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGAGACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAGGCAAATAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCTTATGAAGGCTTTAGGTGGGAGTGAAATTGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTAGGGCTTGGCGTATTTATATGTAGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACCTAAAGGCCTATAAATCAGCTTTTTGGTGCT # Right flank : CTTATATAGTAGATGGTAAAACAGTCTTTAAGACACCTGTACCTAATGGTGCTTCTAAAGGACAATTTCCATATGTATGTAATGTAGCTGACAAAGGTAGAGAGTTGAATAATAACAATACCAAGCGTTAAAAGATGCTGCTGTGTTAGTAAGTAAACCTGTTCAAATAGACGAGAACAGAAAATCTACCATAGACGATGAACCAGCTGAGGCTAAGGTACAGGATAGGTCTGTAAACACTAATGCCGTACCTAGGGCTGAAGAGCCTGTAGATAATACACCTAAGGGTAAAATAGTAGCACTATTGAAAAAGGCGTCTATACCAGGTATCAAAATAGATGCTAAAGGTAGGTACATTGGAGAAGTAGGCGGTTATGGCAATGGTAGAGCTATAATAACTTTACCTAGTGAGGAGGAGATAGAGTTCGCGCCTAGCGAAGCTTTTAATAAGCTAGCAGCGGACTACAAAGAGTATTTAAAAGACATGGAAAATGGTGCAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 98637-99216 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIRS01000006.1 Campylobacter concisus strain H20O-S1 NODE_6_length_131516_cov_82.6533, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 98637 37 83.8 36 T.A.TGTT............................. AGGTTACGAGTTATCTTATCCCCATTCATTTCTAAA 98710 37 94.6 46 ......................CA............. ACCTCGATCTCGCATAACTCTGCGATCTCAAGTGTTACATTAGCAG 98793 37 94.6 36 ................................A...T CATAAAACATAAACCAAGGCGGCGTAAGCGAAAAAG 98866 37 91.9 43 ......................CA........A.... TTGTCTCCGTTCATCTCTAGTATGACAACTTTCATACTGACTC 98946 37 100.0 40 ..................................... TGTACCACGTTAGGGGTGAGTGATCTATGAGGTTCATGAG 99023 37 94.6 41 ......................CA............. TTGCTCATTACACTATCCTTTCCGTAGGTTTTAGTATCGAC 99101 37 100.0 40 ..................................... AGCAGAGACGAAGCTAGTTGGTCTTTGTTCATACTATTAC 99178 37 94.6 0 .................................CG.. | A,A [99209,99211] ========== ====== ====== ====== ===================================== ============================================== ================== 8 37 94.3 40 ATTTAAACAAATTTGACCCGATTTAGGGGATTGAAAC # Left flank : ACGCTTTTTAGCGCATATCCAAAAGCTCCCCTCACCTGCGAACCGATAAAAAATGGCGGCTTTTGTGATGGCTCAAATTTAACTCTAAGCTCGGCGTACCTCATCAAAACTCCTTATCTTCGCATAGTCTAAAACCGCACCCACCATGCTCTTTTAGACTATTTTTTCTATTTGTTTTAAATTTGGAGATAAATTTATTAAGATTTGGTAGCTCTAGCAGTACGCCAAGACTATCTCTTGCCGCCCTTATATTGCGAGAAAAGGTCAAAATCATATTAGTTTTGTTATTCACTTCAACGCTCGATTTTAAAATTACCCTATTATATATGAATTAAAGGCAAATGTTTATGTTTTTTAAATTTTTGTTTAAAAATTATTATTTTTTGTATATCTTATGCACAATTTAACACTTTTGGCTTTTAGCTTAAATTTTCATCTTTTTGGCTAAAATTTCGAAAATTTGTGATTGTAAAGATATTTAAAATAGGTTCTTTCACTTA # Right flank : CCCATACCACACTTAAAAGGTAAATTCAAAATGTTTACTAAAAACCTAGAACACATATTTACAAAAGCTGCTCTAAGCTCCGCATTTGACGAAATTTCTGCAAATTCTCTGGGTTTAGACGAGATCTCATATGCAGACTTTAAGAAAAATTTTAACCAAAACGCAGCTCATCTCATACATTCATTGATAAATGGCACCTATGCGCCAGAGCCACTAAAAAGGATAGCCATTCCCAAGGAAAACCACAACGGAGTAAGGCCCATAGGCATATCCTCTATAAAAGACAAACTAGTTCAAAGAGTCCTATACTCAGAGCTTAGTCCATACTTCGATGAGACGTTTTTATCAAATTCCTACGCCTACCGCCCGCACAAATCCACCTACAAAGCCATAAACAGAGCCAGTAGCTTCATAAACGAAAATGACTGTTGGATACTAAAAGCCGACGTAAAAGACTTTTTCGAGTCGATAGACCACTCAAAACTACTACAAATTTTGCA # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:0, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATTTAGGGGATTGAAAC # Alternate repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 2 102201-103294 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIRS01000006.1 Campylobacter concisus strain H20O-S1 NODE_6_length_131516_cov_82.6533, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 102201 37 100.0 38 ..................................... AATACTTCCTCCGCTGTTGAGAAACGATGTTGCTTCTC 102276 37 100.0 36 ..................................... CTTTTCTCCTTTGACTACTACATTGTAGTAGCCTCT 102349 37 100.0 37 ..................................... GCCTTGAGTGCGTCTTCAGCAGTGTTTGCCTTCACAA 102423 37 100.0 37 ..................................... CCCTTGGCTACCACATTGTAGAAACCTTTGTTTGAAG 102497 37 100.0 45 ..................................... GCTATTCTTAAGTTATCTAGAGACACGCTATGTATGCCTTGTGGT 102579 37 100.0 40 ..................................... AAAGCTCTCTCGTATTCATAGTTTTTACGATAGTATTTGT 102656 37 97.3 39 ......................A.............. TCAAAACGGTGCCCCTTACCACTTTGGCAAGAGTGAGGT 102732 37 94.6 39 .......T..............A.............. TCAAACCACGCCGCCCATTTAGGCAAATTCTCGCTTTTT 102808 37 100.0 39 ..................................... GCTACAGTTGTAGCTGCACCTTTAAGGTCTACACTCTTG 102884 37 94.6 41 ......................TT............. TCTTTGTTCTGTTTCTTTAACCCTTGTTTAGCAAGGATTAG 102962 37 94.6 36 ......................TT............. GCAATGAACCATAAAGGTATTGCCTTCACCATAGGT 103035 37 97.3 37 ....................C................ ATAGTCATATTCTTATGCTTTTCGTCATTGCTCTTGA 103109 37 97.3 39 ....................C................ CATATAATGCTACTCGCTGTAAAGAGGGGTATTATAGGA 103185 37 91.9 35 ....................G.TT............. GGATAACCCATTCCATACTATTCTCCTTAAGATAA 103257 37 91.9 0 ..............................C.A...A | T [103291] ========== ====== ====== ====== ===================================== ============================================= ================== 15 37 97.3 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : CTTTGAGCTATGCGATAAAAAAGGTATCTTCGAGGCGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTATTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCATTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTAGGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTTCATACCCATACATTTGCGAACTTTTTTGAGCTTTTCGCGAATTTTGGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : AAATGGCAAAGCCTAGGCGCTTTATGTTGTTATTTATAAAAAATGAGTAGTGCTTATATGCGTTTGTTCGGTAAATTTAGATAAGAAGATGTGAGATGATAGGTTTTTTGTGATTTGCGTAGGTAAATAAAAAGCTACTTCAAATGAGCCATGAATTTTAGTTCATGGCTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTCGTTTGGACCTTGGTGTAGCCACCAAAGCTTTGACCCACTTTTTGGTGAGCGCGAGCAGATGAGTAAGATCTGCTTGAAGACGATGAAGAAGACTTTGAATAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTGTTGAATTTTTTGTTTTTACATAGACTACTTCAAATGAGCCATAAATTTTGCTTCATGGCTGCATGGGCCAACTATTTGGAAGTTGGCTTCATGCGAAACGTGCCCTTAGTCGTTTGGACTTTGGTATAGCCACCAAAGC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //