Array 1 361360-362113 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023027.1 Anaerostipes caccae L1-92 strain JCM 13470 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 361360 30 100.0 37 .............................. GACATTATCATCACAAATAAAATTCCCTGGGACTTTG 361427 30 100.0 34 .............................. ATTCTATATTTCATTTTTTATTCCTCCCTTCTGC 361491 30 100.0 37 .............................. GTTAGGCATCCTGTTTTAGCCCGCTCCGGCGGGCAGG 361558 30 100.0 36 .............................. TTTTTATCGAATGCAAAGCTATAAAAGGGGATAAAA 361624 30 100.0 36 .............................. GGTGGTTTCGTAATTCGTAGATAATTTCGTAATCGG 361690 30 100.0 36 .............................. GATTCCAATACGCCGTTTTTAAAGAGCAACACATAT 361756 30 100.0 35 .............................. GTACCAGCCCCTGAGGTTGCACCAGTATCCATCGC 361821 30 100.0 36 .............................. TATGACTATGAGGAGGCGTTCAATCAACAGATCGAG 361887 30 100.0 37 .............................. TCCGTTCTTTTCTTCTACAATGGTGTAGGCTTTTTTG 361954 30 100.0 36 .............................. GAATATGCCGGGTACAATATCTTTAACGGAGAGTTA 362020 30 90.0 35 ...........A............C..A.. TAGTTATATCCTTGGATCGCCACTTTGATATGGTC 362085 29 86.7 0 ...........G...T.......-.....A | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 98.1 36 GTAATAATAGATCCACATTGGAATTTAGAG # Left flank : TTGAGGAATCAGGGGGTTGTATATGCCTCTTTTAAATATGGAGAATTTGAGGGAGAGCGGAATGGAAGATACTTTACGGATTTGAATGAGGAACGACTGCACAGATTGGCAGATGAAGCTGGAGTTTTTATTGTTGAGGAAACATGGATCACGTCTGATGTAAGACCGGGGAGAGATGAAGAAAAATGGCTGAATATGATTTTGAAGAAGAAAGAATTATTTTGAGAGTTGATTCAGAAGGTTCTATCGAGTGTCAGATCATAGATGTTATAAGAAAGATAATCAATTAGGAAACGGTTGATCTGTAAGGATGAGGGACATTCTGTCAACCTGTTATAATGTAAAAATACCAGGGGGTCGACAACGGGCGGAATAGAGGCGTGAAATGTAAAAATTATAAGCAGGGTTGAAGGTTAAAGTTATGAAAAATGCGGTAATCTTTGCAGGCCGACAAATGGGGGTTGAAAAATGCTTATTTTTGCTATATTGTGAATGTATGG # Right flank : AGACTAAACCGTTCTAACTCTGAAATGTGTTCGGTACAAGTAATAATAGAAATATAAAAGTTTGAATGAACTTAGATAGCAAACAGGAAGAAGTATGCTGTTAATATTAAAAATACGGAAACAATGTAAGTATTGTCACCGTACAAAATATTGCTTTTCAGTTCATTATAATTTTTTAAAATATCCACTATGGCCTATTAGTACTATTATAGAATTATTATATACTCTAAATCCCATTATGTATAAACTATATTATTAACCTATTTGATTATAATATAAAAACTTAACTTATTCAAATTTTTTCATTTTAAAATAAATAGCATTATTATATAAGGTTTAATATTGACAAATATAATAAGTGGTAGTATTATACAGATAAAGGAAGCAAAAGGAGGAAAATAAATATGCGTCTAGAGTTACAATTGGATCTTGAAAAGCCTGAACTAAGCAAAGATTATAGAAGAATTGTATTGTCGTATTTAAAGTTTGCGCTTAGCGAG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAATAGATCCACATTGGAATTTAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 370945-372551 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023027.1 Anaerostipes caccae L1-92 strain JCM 13470 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 370945 30 100.0 35 .............................. AGATCCGCCTCCAAAAATGCAGAAGAGATCTCTGC 371010 30 100.0 35 .............................. TCTCTTCTGATACCTTATCCGGCGGGGCCGTCACA 371075 30 100.0 35 .............................. TAGTTAGAAGCGATAGCTTAACCAGCGGAAAAACA 371140 30 100.0 36 .............................. GCTGATGCCGCTTTAAATTGGGCATTGGCCAGCTTG 371206 30 100.0 37 .............................. GTGCTCGTTCGTAGCGCTCAATCGACACTTGTTTCGC 371273 30 100.0 35 .............................. GTCTTCTGCCAGCATGTCGGCCTGTGATGCAAGCC 371338 30 100.0 35 .............................. GCGTATGTTTTTCGTTTAATTACTTGCCCATCTTT 371403 30 100.0 37 .............................. AAGGAATGGGGAATTGAATAAGGCAATTAGTAGACAG 371470 30 100.0 35 .............................. TACAAAGGAGAAGACGTTCTCTGGCCTTCTCCTTA 371535 30 100.0 36 .............................. TTTTTTGCAATATTGACAGACTTTCTGATCTTGCTC 371601 30 100.0 36 .............................. AGTTTAAGTCCCTGTGCAAAGTAGCTGCCAGATTTT 371667 30 100.0 36 .............................. TAGTTCATTGAATAATACCTCTTCTTGTGCCTCTTT 371733 30 100.0 36 .............................. AAAGCTACAACTGGGAAGACGTTGGCCAAAGCAATG 371799 30 100.0 36 .............................. GCGAGAGATTATGAATGCAGTGAATGATGCCGAAGT 371865 30 100.0 36 .............................. TCCGGTGGGGCCATGTCCCTGAACATCATATTTCCA 371931 30 100.0 35 .............................. GATCCTGCAAATCATCAACAACCGTTTTAAGAACC 371996 30 100.0 35 .............................. GCATTTAAGGTCACCTCCTCTTCTATTTCAACATC 372061 30 100.0 36 .............................. TAGATTTCTGTTTGCAGATTTTTAAAATTCAGTAGT 372127 30 100.0 36 .............................. GATGCCACAACGAAGAGCATGAGCGATTCGGAAGTA 372193 30 100.0 36 .............................. TTGTAATATGCTTGCTCTTCATTTAGCTTTTTCGAC 372259 30 100.0 35 .............................. AAAGATGTTTCTGCATCTCCCGGTAGATAGAAATA 372324 30 100.0 34 .............................. GTAGCAACAAGCGCAATAGTAACAAACCGCACGA 372388 30 96.7 37 ..T........................... AAATCAAAGAAGCAAGAAAAAGGCTTGGGATTGATTC 372455 30 100.0 37 .............................. GATTTTAAAGGATGCTTGGAAGGCGGAAAATGTATTA 372522 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 99.9 36 ATCTTAATAGAAACATAGTGGAATTTAGAG # Left flank : GGGGAAAAAGAGTATGAAGGGTTTAAGATATGGTGGTAGTTTATGTATGTAGTTTTGGTTTATGATATTAGTCAAAGTGAAAATGGACAAAAACGCTGGTCAAGGGTTTTTAAGATATGTAAGAAATATTTGTCACATATACAAAATTCTGTTTTTGAGGGCGAGATATCCAAGGTCCAGCTGGTACAATTACAGCAGGAATTGAAGCCTTATGTGGACAAAGATTTAGATTCCGTCATTATTTTCAAAAGTCGTCATGAGAGATGGCTGGATAAGGAATTTTGGGGGAAAGAGGAGGATAAGACTAGTTTTCTTATATAAGAACTGTCGACCCTTGGTAGTGCAAAATTATAGGGAGATCGACAGTAGCGAGTAACTTAATAAAACAGGGACTTCATGCTTATATAATTTGTATCTTTGTGTTGAAAGTTAATGATTATTATGGGGTCGACAATTTGTAGGGGTTTAAAGGTGAGAAATAGGGGCTTCTAATGTAACGG # Right flank : GCAAGCAACTTGAATATTAAATAGACGTTGCACAGATTTTTATGTTATTATATTATTATATCCATGCACATATTCAGCAAGGAAGGTGATGAACATGACAAACGAGGAGCAAATACTCTCTATACTTACAATTCTATCTAAGGATGTAAATGCATTATCTAAAGATGTATGTGAGATAAAACGAGACATGAAAGATGTTAAACAGCGTGTAACTAATCTTGAAGTTACTCAGGAAACTGAGATTATCCCACGTTTGAAAGATATTGAATCTTGCTACCTTGATACATATAAACGTTATCAAGACGGAAGTGAAGATATAGATTCTCTTAAAACGGACGTAACAATGATTAAGCGTTTTTTAGCACAAGTGAGATAAATAGGTATAATATAACATATATAACTCGTGTAAAGTCTACTAAGGCTTATACATGGGTTATTTTTATCTTAATAGAGACATAGAGGAATTTAGAGATTGATTGGTTTGCAATGGTAGTACAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTTAATAGAAACATAGTGGAATTTAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 373996-374609 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023027.1 Anaerostipes caccae L1-92 strain JCM 13470 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================== ================== 373996 29 100.0 36 ............................. TACGATTGCTTCATGAACGAGGACAGATACTTCAAG 374061 29 93.1 35 .......................T..G.. AGAGTTGCCTTTAAGGAGTCAAACCGAAGTTTCAA 374125 29 89.7 38 .C.....................T..G.. GAAAGAAGACCGGAAGAATAAGCTGGTATGCAACCACA 374192 29 89.7 38 .C.....................T..G.. TCGTTTGAATTGTTTTATCAGCACATCCACAGCATTTA 374259 29 96.6 35 .C........................... TGGTTTCTAAGTTGTGTGTGATATATATAGACCCG 374323 29 96.6 36 ....T........................ TAGCGTGTTTAGAATTTCCGGTATCGTCTCAGCAAG 374388 29 100.0 100 ............................. ATCACTGTTTTTGCAATTCCAACCATTTTTAAAGAGTAATAATAGAACCCATTGGAGTCTAAAGATTTCTTTTACATATTTAATGTGGAAACAAGAACGG 374517 29 82.8 35 .GA.............T......T..G.. GTTTCAGTACCAGAAGTACCGATTAATGGTTTTGA 374581 28 75.9 0 .T..............T.-..G.T..G.T | C [374601] ========== ====== ====== ====== ============================= ==================================================================================================== ================== 9 29 91.6 44 TATTAATAGAAACATAGTGGAATCTAAAG # Left flank : ACATGGAACAATTATATAACTATATTGCTTATAATCTTCTTTCACCGGAAAATGCCATAGAACAATATAATCGAATTGCAGATAAGATACTAACACTGGATATTATGCCAGAACGTAACCGAATTATGGATTCAGAGCCTGAACATAGCAAAGAAATAAGGAGCATGTTAGTGGATAATTATTCTGTTTTTTATGTAATTGAGGGAGACAGAGTAATTGTAACAGATATTTTATATAGTGCGTCAGATATTAATAGGCGATTGAAAGGATAAAGCAGTTATAACTTCCAGAAGGTAGTGGGAATCATGATTTGTAAGAATACTGTCGACCGCAGATACTGTGAAATTTTCAGTGACTCGACAATGTGAGTGGTGAAGCCATTTTATACTACATTTATAGCAATAGATAAAGCTTATAACCAAATGAAAATAATGAAATAGATTGGGTCGACAATTAAGGATTGGGAATTACTTGTATTACTTTAGTGTGGAGATACGGGG # Right flank : TTGTCGACGTTATGCCAGAATTCATTGCAGATTAAGGCCTTAATAAAACTGTATGGTTACTCTGTCAAGAGTTTTGTATAAACATAAAAATTATATCAATTCTAATTAATTAAAGAAAAAACACAGCATTTGACAATCAATCTCATCAAAAGCTGTGTTTTTTATTATGTTATCTACTCTTTCCCATCCCAACAATAAGTACAGAGTTTTTTAGGATCCAATCCCACAGACTCAATCATATCATCCAGCCTGTGATATCTAAGCGATGTGAAATTCAGCTGCTTACAGATTTCATCGATCATACCCTGATATTCCGGAGAGTCCGGATTTGAAAACTTCTCCAGATGTACATTCTTGTAATCTCCGCTGATCTGTTCAATGATCCGGCGTGTGATCAGATCCATTTCAGAAGTAGAGCGTGAGAAATTCAAATATTTACACCCATATAAAATCGGCGGACAAGCCGGGCGGACGTGTACTTCTTTTGCACCGCTCTGATA # Questionable array : NO Score: 4.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.86, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTAATAGAAACATAGTGGAATCTAAAG # Alternate repeat : TCTTAATAGAAACATAGTGGAATTTAGAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 953326-953484 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023027.1 Anaerostipes caccae L1-92 strain JCM 13470 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 953326 30 100.0 33 .............................. GTAGACCGACAGAAAGAAATGCCTCTGGAGATT 953389 30 100.0 36 .............................. ACGTCCATGAAGTAATTAAAAATTGGTTTGATTCGG 953455 30 86.7 0 ..............G.........CA.T.. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 95.6 35 GATAAACAATAACAAGAGTTGTATTGAAAT # Left flank : GCAGTGCTGGCAGTACCGCTTTCATTGTATGGAGACGTGGTTGGAATCGTGATCTGGCTCGTGATTTTCGGATGTGCAATTTATTATGCAGGCCGCGTTGAGAAACAGAAAAAGACACATGATATTCAGACGTATAAAGAGATCATGGCTTTTACGGAAGGAAAAAAACTCGATGAAATAGAGAAATACCGGGAATCCGGAAAACGTCCGTATCAGAAATTACTGCTGGCAGTCTGCGCAGGGCTTCTGACATTGGCAGTTTCAGCAGTAATGATCTTTTTACTCCGATAGGGAAGTTTCATGTTTTTTTCAAAAAGAATTGTTCGATTTCCCAACCGGTAAATTTAGCGGGTACGAAGAAACCGCATAAAACTGCGGGTTAGAGATTGTTTTTAAAGAAAATTAAAAAAACTGCTGTCGGTTGGGAAAAAATAAGGGAAACGTTGATTTTATCAGGGGAAATGACTATAATGAAAATAAAGAATGGCGGAAATACGTTG # Right flank : TTCAGAGCCATGTAGATAAAAACAGATTACACTTGTATATTAATTAAAGTTAAAATATTCTTACAGGACACTCGATAGCACATATCATTCGGGGCATGTGCTTTGCATTATAGGGTTTGCAGGAGAGGGGTGTATAACCGTGCTGATATTTCTTATATGGCTTCTTATAAGCTGTTCATTTATTATCATTGGCTTATATGCCTTTAACTCAAAGAAGGAAGCTGCCTTTGGTTTCTGGGCAAATGCAGAGGTTTTCCCGGTAAATAATATAAAGTCATACAATCGCGCCATGGGAAAACTATGGTGTACCTTTGGGGCCATTCTGGCTGTTTTAGGTCTGCCGCTTCTGAAAGAACAAAACTCACCATATATTCTGCTTTCAATTTTAGGGGTTATGGCAGAATCCATTGTGGCTATGGCCGTCTATGTGACAGTGATAGAGAAAAAATATCGAAAGAAGCCCTAAATATTTTTAAGTAAATAGTACAGCTCTGTTAAAT # Questionable array : NO Score: 8.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAACAATAACAAGAGTTGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 5 962898-963059 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023027.1 Anaerostipes caccae L1-92 strain JCM 13470 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 962898 30 100.0 35 .............................. ATGGAAGACTTACAAAATAAAAGATTTGATAACAT 962963 30 100.0 37 .............................. TCCGCCTTAATGTTGCTATAGATAACCTCTGTATTTC 963030 30 80.0 0 ...T...................C.AG.CC | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 93.3 36 GATAAATAAAAACAAGAGTTGTATTGAAAT # Left flank : ATGGTTTTGGGCTGATTTATGTGATTCATCACATTGAAAAACAAAAGATTTATTACGAATTTGGAAAGGAACACTGCTTTTTTGTGGTTGTGACATAAGTGAGGAGGAAAAGAAATGCTGCCGAATGATCCGGTGATACTGTTAAGCTACATCAATACACAGCTGAGGGACTATTATGACAGTTTCGAGGAACTGTGCAAGAGTCTGTGTGTGGACTCAGGAGAGATCAGCACAAAACTTTCGGGTATCGGTTATGAATATCATCCTGAGACAAATCAATTCAGATAATGGAGAATAAGGGCTGCCGGATGGCGGCTTTTATTGGTTTTCCCAACCTCAAAAAGAGACGAAATGCCGGGAGACCGCTTAAAATGGCGGTTGGAAGCCGATTTGAAAGAAAATGCCGGAAAAACAGAAACGGTTGGGAAAAATTCAGAGAAACGTTGAATTTATCAGGGAAAATGACTATAATGGATATAAGGAATGGCGGAAATACGTTG # Right flank : CTTTATTTACAACAAATACAAATCATGAAAAGGCATTGAGCTTCTTTAATTTCACAAGAAACTCAATGCCTAAATTTTTACTTTTTTATATCCGTCGATTCAAATCATTTATAAAAACTGCTCAACAAACCCAACCGGAAGCATCGTTCGCTCTGCAGTTTCTTCTGCTGAGAGCCCCTGTGACAAGAAACGTTTTGCAACGCTCTCCATGCTCTCTGCTGTCTCTACGATATATTTGTCATAATCGTAAAACCGCATAACACGCTGGCCCCATGGATATTCTTTGATGCCATGGAGAAATTCAATCCCTTCCAGAGCTTTCAGCTTATCTTCCCAGGCGTCCAAGTCTTCCACTTCAAAATAAAGCTGAAAATTATCAGGTTTCTCCTGGGGCTCCAGTTTCACTCCGACCAATTCTTCGTAGTTGGACTGCAGAGACAGGCCGTTTTGAAAAGAAACATGAACCCCCAGATCCATCTCTACCGTTTGTTCCATTACCT # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATAAAAACAAGAGTTGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 6 1078185-1078734 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023027.1 Anaerostipes caccae L1-92 strain JCM 13470 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1078185 30 100.0 34 .............................. TCTGAATTAACGGTGGCCACGTTGGTAACATCCT 1078249 30 100.0 34 .............................. TCCAAACCGCCGTCGTCCATCCGTGACGCACCAT 1078313 30 100.0 36 .............................. TTCGAGGAGTCACTTTTTTCCCCGTAAGAGTAGAAA 1078379 30 100.0 35 .............................. TTTTTGGAGTAATTGAAATCTTGGCCAGCCACAGC 1078444 30 100.0 36 .............................. TCTGAACCCGGAATCTTTATTTCCCCTGTGAGAGTA 1078510 30 100.0 34 .............................. TCACTTTAGAGATTTAGTTAAAAAAGGAGTATAA 1078574 30 100.0 36 .............................. ATTAAGCCATCAATCCAATACTGCGGCTGAACGCCG 1078640 30 100.0 35 .............................. AATTGGATTTGTTTTGCCCAAGATATTTGTTTTTC 1078705 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 100.0 35 GATAAACAGTAACAAGAGTTGTATTGAAAT # Left flank : AAGGCTCTTTAAAGAGTGTGATCTCACGATAAGGTATTTAGAATACTATGATTGAAATATAAAAAATATAAACTTGATTAAGTTGGTAAAGTATAAGTTGTTTCCAGTATATACCTGAGATTGGCAGAAGTAAATAGGGTTGGGATAAACTTGATTAAGTTTGTGAAGTATAACGAAAAAAAGAGAAAATAACTGTGAGTATTGACAGTAGCATTTTCTGCATGATTTCCGTTCGGCTCTTAGAATGCCTCACTCCAATCATGCAGAAAAACTACACCGTATTTCATACCCTTCGGGTGGCGCGCTCTGCGCGATAAGGTATACTGATTTTCCAACCGATAAAATTGATAATTACATACAAACCGCAGAGGATAGCCATTTGAAGGGGTATTGGAGAAAAATGTGAAAAAATTGATGACGGTTGGGAAATATTTAGAGAAACGTTGATTTTATCAGGAAAACTGGATATAATGAAATGGAAGAATGGCTTAAAAGCGTTG # Right flank : TTTGATTGCAAGATCAAACCGTTTCATTACAGCCAGATAAACAGTAACAGAAATAAGATATACCCTGATAGTTAGGCAAAGAAAAGGAGTCAATGTCTAACTGCCAGGGTATTTTTCTGTATGTCATGACATTTTGACCAGTTTTACGACTTGCTGCCTCAGAGATGTAAGATTTTCTAACATTCAGCAAAGTCTCTGCGGCGGCCCATTTGGAACTATCTAACGATAGTTTTTTAGCACTATTGGAGGAACGCATTTCAAAGCGTGACGGAAATAGTGCTAAAAAACCCATACCTTATCGCACATAGCGCTCCTACCCGGAGGGTATAAATTTATCTAGTTTTTGTATACATCTGGTTTTTCTCAAAAAACTCTTTCGCTCTTTCTTATTTCTATGTTACAGTATAAATTAGTGTTTTCTGTCCGGAAACGAAAAATTGTGTCGGGCAGGGAGTGATTTTAACGAATGACGATGGAGGAGATTGAATTGGTAACGATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAACAGTAACAAGAGTTGTATTGAAAT # Alternate repeat : GATAAACAGTAACAAGAGTTGTATTGAAATA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 7 1609550-1609713 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023027.1 Anaerostipes caccae L1-92 strain JCM 13470 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1609550 30 100.0 36 .............................. GAAGAAAATAGAAGTGGGGTATATCCCTGTTATGAG 1609616 30 100.0 38 .............................. TATGTACTCATAAGCACCACCCACTTTCGCAAGACTCC 1609684 30 80.0 0 ................A......AA.TTT. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 93.3 38 GATAAACAGTAACAAGTGTTGTATTGAAAT # Left flank : AGGAGCAGAGAATGACGCTCGCGGAACTGGAAGACCGCCTGACAAAGAGGATGGATTATCTGCGAAACCGCTATCAGCATCGGCTGGAACTATATGCACAGCGCCTGCACGGACTTTCTCCTACGGCAAAACTGATTGGAGGATATGGATATCTGTCGGATCAGTCCGGACAGCCGGTTTTATCGACGGCTCAGATATCTGAAGGGGATGAAGTGCAGATTACCATCTCTGACGGGTCTATAAAAACAAAAGTAACACAAGTTATACCGAGAGAAAAATAAAGAACAAAGTGGGCTTGCCTATTTTGTATTTTACAGATGCTTAGTTTTCCCAACCTCATGAACCAAAAAACGTCGGAGAACCGCTTAAAATGGGAGTCAGGAGGCGATTTTAAAGGTGATTTAGAAAAACAAACAATCGGTTGGTAAAAAATCAAAGAAACGTTGATTTCATCAGGAAAACTGACTATAATAAAAACAAGAAACGGCGTAAAAACGTTG # Right flank : TTCTGTTTTACAGAATGTATTATAAAACAGGAAATTAGTAGATTATTATTAGAATACATAAGATGAGAAGACGGGGAGATTTATCCTGTCTTTTCTTTTGCTCTCCGATCAACAGGACAGATTTCGAAAGATTCCTATTCAGCACGTAAAATACCTCATTCCAGTCATAAAGAAGCCGGACGTAATATCTACTGGAGATAATGTCTGATGGAGCAGGCTGCTTAGAGACAAAAGGTGCCATTTGCGATAGTTTTTCTCCATTGTGGGAAGGAGGTCTTTTCAGAGCCGACTGGAGATACTGGAGAAAAACTCAAGGGTTTCATTTCAAACCAAATATGATATAATGAAGAAAATATTTTTGGAAAGGAAATCAGGTTGTAACTTATGGCAAAAAAGAAGTTTAGTATTGATGAGGGATTCAGCCAGTTAGACGATATATTAAAGAATTTAGAGCAGGAGGACATAAAGCTTGCCGATGCGGTAGAACTTTATACAAAAGG # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAACAGTAACAAGTGTTGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 8 2632007-2631198 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023027.1 Anaerostipes caccae L1-92 strain JCM 13470 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2632006 30 100.0 34 .............................. TCCTCCTATCTGCCGTTCAAAGAGCTGTTTTTCC 2631942 30 100.0 35 .............................. TTGACCCACTGTTCTCCGGCCAGCCAGGCGATCAC 2631877 30 96.7 34 .........................A.... GATATGATGTTTATTGGTCGGATTACCGATAATA 2631813 30 100.0 35 .............................. TCCAATATTTGATACTCAAGGCCATCTACATTTAT 2631748 30 100.0 34 .............................. ATTCAATCCGTTGGCTCCTCTCTGACAAGGAAAG 2631684 30 100.0 36 .............................. TATAATCAAAAGATAGCAATTCAAACGTATCAAACG 2631618 30 100.0 36 .............................. GCCTTGCACATTGTTTTATTTATATCTTTCTTAACT 2631552 30 100.0 34 .............................. TGGCATCGTTCACGGCCTCCTCAGCGTCTTCCTT 2631488 30 100.0 35 .............................. TAGCCTCTGCGCCCTGAGACGCTCTTTTGGAACTG 2631423 30 100.0 36 .............................. ATTCCTTCCCATCCTTTGTATATTTCAGGGAGAAAT 2631357 30 100.0 35 .............................. TCGAGCCAGGGAACGCATTTGGCAGCACAACGAAA 2631292 30 100.0 35 .............................. TCTGCAGTTGCATAAGGATCATCTTTTGCCACATA 2631227 30 80.0 0 ...A..C............CA..C....G. | ========== ====== ====== ====== ============================== ==================================== ================== 13 30 98.2 35 GATTAATAAAAACATTAGATGTATTGAAAT # Left flank : GGGCACACCGTGTTTTATACTCTTCGGGTGGACGCGCTTTGCGCGATAAGGTATGACATTTTCCACATGATTTTCGTTCGGCCCTTAGAATGCCTCACTCCAATCATATGGAAAATGGACGTAATGTCCGTTGGAGAAGGCCCGCTGTCAAAAAAGGTGCCGCTTTTCGAAAGTTATTTACCGCTATTGGAGGAGCGCATTTCAAAAGCACGACGGAAATAGTGGTGAATAACTCATAATATATGGGGAGATCAGTGGATCGTCCTGCTGAAGATACTGTAAATTAAGTCTTGAGATTGAGTTTAATTTCACAAAAAGGAAGGCGTTTTCCCAACCTTGTTTTTATTAGAAATGGAAGAAAGCTCGGTTTTATGCGGGTTAGGAGAAGTTATGGAAGGAAATTGAAATTATAGAGCGGAGGTTGGGAAAATATCTAAAAAACGTTGAAAAATAAGGGTTTATAGAGTATCATGAAAAATAGAAATGGCTTAAAAGCGTTG # Right flank : TCTTTTCTATTACATAAATTTTCTACAATTTTATCTTTAAAATATAGGTGAAGAATTTTTTTGGAATTTGTTGAGAAATCAGGATGATTGTAGTAAAATAGTAGATAGAATGGTTAAGGATTTGGGGATTCAGATATAAATATGATGAATGAGAATGTCTTACAGAGATATGGGGACCAATTCGCTTCAAAATGGGATAAGAAAAAGAATAGTAAATTCATTAGAATAGCTGAAGATAGCTGTTCTTACAAGTGTGCTTTGCATAGATATAATTAGACAGAAGTTGTAAATATACAATTTCTGTCTTTTTCTTTGGTTAATAAAGGGGATGAGAGTCAGTTCAACAAAATGGGGTATGGTAATTATAACTTGATTCTTAGTAATGTAGAGATAAATTTGTATGAAAAGAAAATGTAAATATTAAACAAAAAGGAGAAACAGCTGTTATAACAACGCTGAGTATTGATTATGAGATTTCTAGTATTTTATCGAAATGAAAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAAAAACATTAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 9 2642038-2641612 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023027.1 Anaerostipes caccae L1-92 strain JCM 13470 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2642037 30 96.7 36 ......T....................... ACTGCTTTTCCATTCCATTCTGTCATGATACGCCCT 2641971 30 96.7 36 ......T....................... TACACTAGTCTGCAGTGATAACTATCCAGCGATCAC 2641905 30 100.0 35 .............................. GGGTTTTTAGAAGATCTTGCAAAAGATCTTGTAAA 2641840 30 100.0 36 .............................. TTATTATCAAACGCCCCCAGCCAGTACATTCTCCCT 2641774 30 100.0 37 .............................. CACATGAATTTCGGTCGTGCACATAAATTGCGGCACC 2641707 30 96.7 36 ....C......................... TGATGAATTACTACACCTCCAATAATACTTGATTCC 2641641 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.6 36 GATAAACAAAAACAAGAGTTGTATTGAAAT # Left flank : CGCAAAAGCCAGGCGGTGGTTTTGATTGGGGTGACTTATCAGCAAAGAGGGCTGAATGAGTGCTGTGGTTGGTGTAATCAGACAAACTGCCAGGGCTGCAGGGAGAACCAAAGCGTCTGTGTATTTGATCCGGTGGATCTGGGAATCGCACTGGGATCGGCAGTTAGTGTGGCATCCTTAAACCATGTGGACAACCGGATCATGTTTTCTGTTGGAAAAGGAGCACTATCCTTGGGGATGCTGGGACCGGAAGTGAAGATAATCCTTGGAATTCCATTGGCTGCGGCGGGAAAAGCGCCATATTTTGACCGAAAATAACGATGTTTTCCCAACCGGCTAAATTTAAAAAGTGGTCCAAAACGTTGATTTTACAGGGGTTGCAGAGGATTTTTAGGATTAGTTTTGAAAATGGACGGCCGGTTGGGAAAAAAGCTGGAAAACGTTGAATATATCTAGGTTTAGAGATATAATGGAAATTGAAGAATGGCTTAAATACGTTG # Right flank : ACACTTACCTCCTCTTTTGTCAAAGGACGTCCACAGATAAATAAAAATAAAATGAATAATAGATTGCTTATCTTAATTTGAATTGTTTGAAAGTACTATGAAATGTTGTATTATTTTGAAAAATATAGTAAAATAGAACAATAGAGTGGTTTGTGTATAAAAGCTACTAATGAATCATTCCCTCCAGGGCAATCGTTACGATAGGTACTATCAGCATGTATACGATACGAGGGTGCATACAAAAGAAAGGGGTGGGGCAGTGGATTTGAAAGTTTTTGAAATTCGGCTAAAAGTATATCTGTTAGAAGATATACCGGTAGAAGCAGTTCAAAAGAAGACAGCCGCACTAATTGACATTTGTCTGAGCAGAGACGAAGCACTTCTGAAATTTCATGAGACGAATCAATTTAAGAATTATTCTTTCGGAAATCCATATCCATTGGAAAAGGACAAAATTTATAAAAAGGATAAGGTGTATGTCATAACAATCCGCACCATTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAACAAAAACAAGAGTTGTATTGAAAT # Alternate repeat : GATAAATAAAAACAAGAGTTGTATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 10 2705191-2704963 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023027.1 Anaerostipes caccae L1-92 strain JCM 13470 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2705190 30 100.0 34 .............................. CTGCCATTGCGCAGGGAATTATAAACTCTATTCC 2705126 30 100.0 38 .............................. ACCCCATAAGATTCACTTGTCCCATAAGATTCGTTTTG 2705058 30 100.0 35 .............................. AATGATACCTGCCTCTGAAATAAAAAAACGTTTTT 2704993 30 80.0 0 ...............AA...A.T...GC.. | A [2704968] ========== ====== ====== ====== ============================== ====================================== ================== 4 30 95.0 36 GATAAATAAAAACAAGTGTTGTATTGAAAT # Left flank : GGATTACGACGATGAAACCATACAAAAGTGGCTGGATAAATTCTACTGGCGGTTCTTCAGCCAGCAGTTTAAGCGCTCTTGCCTGCCGGACGGGCCGAAGGTGGGAAGTGTAGCAGTGTCTCCAAGAGGGGATTTGAGAATGCCGAGCGATGCCAGCGTGAATATCTGGCAGAAGTCATAGATAAGGATTGGAGCTGTGCAGAGTTTTGCATGGCTCCTTTTTTTGTTATCAGATAAAATCTTGCTATGGAATGGAAAGATCTCCAGGCAGGTTGGAAAATCGCATTTAGTGCACAAAGTGGGTAAGTCTCTCAAAGAGGAGGATTTTTCCCAATCTCTAAAAGCAGATGAATGCCGGAAAGCCGCATAGAATAAGGGAGGGAAGCTATTTTGGAAAAGATAAGAGAAAAATTTATGGCGGTTGGGAAAAAATTGAGAAAACGTTGATTTTATGCGGAAAGGCGATTATAATGAAAACAAAGAATGGCGGAAAAACGTTG # Right flank : ACAGAAAACAAACAGATTTGTGCTGTTGTTGTAATATGATTCATTCAATGAATGAACAGAATTCTGTGGAAATATCCATACACAGAGTTCTTATTTTTTTGTCTTTATTTCTGTGCAATCTTTATTAAGTTTTATTTTCTTTTATTTTTACTTGCAAAATGAAAGTCAATATGATAATATACAAGTACAAAGTAAAAGATAATAAAAGAAAACAAAATGGAGGAGTCAGAAATGAAGTTAAGTGCAGATCAAATAGCAGGCATGGTAGACCACACAAATCTCAAAGCCTTTGCCGATGAAGCAATGTTCGAAAAATTATGCAGCGAAGCCAGAGAATATGGTTTTAAGATGGTAGCCATAAATCCTGCACAGACAGAGCGGTGCAAACGCCTTTTGGAAGGATGTCCGGTTCACGTAGGGGCAGCCATAGGATTTCCGCTGGGACAGACAACACTGGAATGTAAAGTATTTGAGACAAAGGATGCCATCGAAAAAGGCGC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATAAAAACAAGTGTTGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 11 2962002-2961778 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023027.1 Anaerostipes caccae L1-92 strain JCM 13470 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2962001 29 100.0 35 ............................. ATATCAGAGTTTTCAACATCGCTGACAGGGATCAG 2961937 29 100.0 37 ............................. TTGTGACCCCTCCATCCCCTATTACAATGCCTTGGAG 2961871 29 100.0 36 ............................. GAGGTTATAGACGATAAAACAGTCGTCTATATTACG 2961806 29 86.2 0 .....................CC.A...G | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 96.5 36 ATAAACAATAACAAGAGTTGTATTGAAAT # Left flank : TTCTTTTCCCTGGCGCATTACTGCACCAAGATATTTTATCATGGACAGGCGATTTCACAAGATGCCTTGGACACTTATTGTTAGGCGAAAAACAAAAATAAAACGGAGGTAATAAATATGAATAATATAATAGAAAAAGCACAGGCAATGGACCAGTTTGGCAACAACCTTCCCGATGTAGAGCAGGGGGGGCAAATAGAGCTTGGTGAGATCTGGGACGGCACAGGAGACGTGCCGCAGGAGTCTTGGAGCATCCAGATCACGGACAGTGATTGGATCAATTACTGCTTTGAGATCGTAGAGAAAAACAGTGATCCACTCAAGACTGTAATCAGGATCACGGACATAGAACTGATATAATGTATAGGCCCGGCAGGTAGCCGGGCATGGCGTAAAAGCATGGGATATAATAGCTGTAAGACCCTATAAGAAGCGGGTAGTTTGTCGTAAATTTGTCGGCAGTGTCTTACAGACCGCATAAAACCGTGGTTCCGTGTTTC # Right flank : CATTAGTGAAGTTCAATAAAACAATATTCTGCTTAAAATTAACAATCTTTCTTTATCCCAAAGATCCGGTTCCCCGGATCTTTATTACATAGTTACAAGGATACCTGATTTTTGACAGAGATCTTTTTTTGACCAGTTACAGCCACGATGATCACCAGTTGCGGAATAGGATCCCGTTAAGGTATAATGATATATATGACCAGCGGATATAGATGCAATACAAAAGAGGGATTTGAATGTTAAACCAACGACAAATTGAAATTTTATTAGAATTCTGCAATCACTCCGATGAGTTCCTGACTGCGTCTCATTTTGCAAAGAAACTGGACGTGAGTCTCAGGACCGTTCAGGGGGACATGAAAGTGATCCGAAAGGAACTTGCGGATGAGACATGTGCGGAATTGGTTTCCAAGGCTTCCAAGGGAAGCTGTATCCAAGTGAAAAACTATGATGAGTTTTCCGCATTCGTGAATTCTCTGTACCAGCAGTACACAACAGTA # Questionable array : NO Score: 8.68 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAACAATAACAAGAGTTGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //