Array 1 133448-130779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOAW010000005.1 Bifidobacterium longum strain MSK.5.11 NODE_5_length_173608_cov_563.422, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 133447 36 100.0 28 .................................... CTCCTGGAGCTGCTACGTATTTGTTCCA 133383 36 100.0 28 .................................... GCCGCAGTTGACGGCTCGAACCTGACCT 133319 36 100.0 28 .................................... AATGAGATCGTGAAGTTCAGCAACCAGT 133255 36 100.0 28 .................................... CGTGGCTCGGCGTGTCGCCTGTGAGGCT 133191 36 100.0 28 .................................... ACCATGTAAGGAGCCGTTTCGATGGTGA 133127 36 100.0 28 .................................... TCCACCGACGTGATGGACAACTACACGA 133063 36 100.0 29 .................................... TAGACGCCATGCTCCGTGGCTCGGCGTGT 132998 36 100.0 28 .................................... CGTTCGCGTTCCTTCCGTTTTTTGGGAT 132934 36 100.0 28 .................................... AAGAAGCGCCCATTGCCCGCCAAGGAGT 132870 36 100.0 28 .................................... ATAATCGCATCGTTAGACAGTTCGTCCA 132806 36 100.0 29 .................................... CACCCCCTCGGCGGGAGTCTTGCAGACGT 132741 36 100.0 28 .................................... TTAAGCCGATTGAGGAGGAGTTGGGACC 132677 36 100.0 28 .................................... GTAGTACTCGCGTACCATCATCTCCTGA 132613 36 100.0 28 .................................... TCGCGCGTCGCCGCCGTTCTGCACCAGT 132549 36 100.0 28 .................................... AAAATCGCCGACGCGTTCGACGTGTCGC 132485 36 100.0 28 .................................... CTGAGGAAGAACCTGACCAACAGGCAGC 132421 36 100.0 28 .................................... GGAACCGTTGGACGTGTGGTGCGTGCGC 132357 36 100.0 29 .................................... AGCATTTCGGCATGGAGCCAAGGCCGTCG 132292 36 100.0 29 .................................... CCTTCAGGCCGTTGAGGAAACCGTCGATG 132227 36 100.0 28 .................................... ATATTGACGTGTTGTTGCTCGATCATCT 132163 36 100.0 28 .................................... CAGCTGGTCAGCGAGGGCATTGTGCCCA 132099 36 100.0 28 .................................... AACATTATGACGTGCCGTTGGAACCCGA 132035 36 100.0 28 .................................... CACCAGGTACGCCCTGTGGGGCGACTAC 131971 36 100.0 28 .................................... CAGTACACTGTGGGTGAGTTGCGCGAAC 131907 36 100.0 28 .................................... GCCTACTCAGGCGGTGGCCTTCGGACCC 131843 36 100.0 29 .................................... GGGCAAGACCGCGTATGTGCGCGACCACA 131778 36 100.0 28 .................................... GACCGCCAGAGAACAAGGCGGCCGAAAC 131714 36 100.0 28 .................................... AGTAAGAAATAATTGATGCAACTGTTCC 131650 36 100.0 28 .................................... CTGAGATGCGCGCTGGAACACGCTCAGT 131586 36 100.0 28 .................................... AATGCGCTGAAATACGGGTTGGCCAACG 131522 36 100.0 29 .................................... GTGAGGGACACCTTCATCCGCATACTGCA 131457 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 131392 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 131328 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 131264 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 131200 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 131135 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 131071 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 131006 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 130942 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 130878 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 130814 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 42 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //