Array 1 253555-253889 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000012.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 253555 30 96.7 31 .............................T GGTGGGCCTGCCCGGGTCATCGTCGTATTCA 253616 30 100.0 31 .............................. CGTCGCTATGAGGGCACAGGAAAATGCAGAA 253677 30 100.0 31 .............................. CTCCCAACTCCGGAAGTTCGGAAGTCCCGAA 253738 30 96.7 31 ..........C................... CCCGAGCGGCCTACGCTCAGGACCGGGCCCA 253799 30 93.3 31 ..........C..................C GGATCCGGTTGGCCTCCCCGGTCTACACGGT 253860 30 90.0 0 ..........C..............T...T | ========== ====== ====== ====== ============================== =============================== ================== 6 30 96.1 31 CTGCTCCCCGTGCACGCGGGGATGGACCCA # Left flank : GCTTCCGACGCGGAGAACGCCCGGGGTTATGAACCGCGACCCGTGGCCGGTCCGTCGGCATGGCGTGCCGAGAGCTGGTGGATCGATCAGGCCGCCGAAGCGGCGGCCAGGGGGTTGACACCTGTTGGTGCCCTTCGTGAGCGCATCGGGATGCCCGAGGATCCCGTCGGGGGACGGCTCGATTCAAGCGACGACGAACTCATTGCTGCCTCGACGAGAGACCTCCGACAGATCGCCAGGCCGACCTGAGCCCCACGCGCGTGGGATGGACCGACCACGACAGTCGACCGCGCCGGACCAGTTCACCTGGGCTCCACCCACGCCGGGGCGATCCCATTTTGTCCAAGCAGCCCCTGAATCTGCCCCCTGTTCCTCGCGAAAATGTCTAGGCTGATGGGAGTGGTGTTCGGGCGGGTGGTTGCGGGATGTCTGGTTTGTCTGTTTTTCAACAACGTGCAGAAATGACGGGTCTGCTGGGGTAGCGTCGCAGGTCAGGAAGA # Right flank : TGACACACGTGGTGCGGTGGTCAGGTGTTCTTTTCCGGAGGGCCAGAGGAGGCACCACGGTCAGCGTCCGACCGCTCCATCGATCTGTTCGCGGAGGATGTCGGCGTGGCCCGCGTGGCGGCCGGTCTCCTCGATCATGTGGACCAGGGCCCAGCGGAGGCTGGGCGCGGGGCGGCCCGGTCCCGGTCGGGGGACGGGTGCGCCGAGGTCGGTGCACCCATCGAGCACTCTGTTCGCCCGCTCGACCGTTCGCCGGTAGCGGGCGACGACGTCGGCCCCGCTGCCCGCGGGAGCGGCCTGGAAGGTCGCCTGCCAGTCGGTGACCCGGTCGCCGAGGAACATCGCGTGCTCGACGAAGGTCAGGTGGTGGAGCAGGCCGAGCAGGTTGGTCCCCGAGGGCACTCCGGCCGTTCGGGCCTGCGGCTCGGGGGCGTTCTCGACCTTCGCGGCGATCGAGGTCCGGAGGTAGTCGAGGAACCCGCGTAGGACCTCCGCTTCGC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGTGCACGCGGGGATGGACCCA # Alternate repeat : ACTGCTCCCCGCGCACGCGGGGATGGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.00,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 255934-256580 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000012.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 255934 29 100.0 32 ............................. TTACTCGTCGTTGGTGTCGGCCAGGTCGTCCC 255995 29 100.0 32 ............................. GCACGCCGGAGGAGATCTTCGCGCGCACCGAG 256056 29 100.0 32 ............................. ACGTTCAAGGGTGTCGCCTTCAACACTTGCTC 256117 29 100.0 32 ............................. CGGGGTCAGGACCTACGGCCCTTTCCTTTGGC 256178 29 100.0 32 ............................. ATCTCGCGCAGGTCGTCGTCCTCGAACATCCC 256239 29 100.0 39 ............................. TGACCCCTCCAGGCCGGTGGCTGGAAAGCACGAGAAATA 256307 29 100.0 32 ............................. GCGGCGAGCCGGTCGGCGAAATGGGCGGTCAT 256368 29 100.0 32 ............................. AACGGGACCATCCCGCCCCAGAACTTGATCCG 256429 29 100.0 32 ............................. TGCCCGGCCGTGAGCTCGAAGTGACCTTCGAG 256490 29 96.6 32 ...............T............. AACTCCTTGGGCATCTGCTCACCGCCGCCCGA 256551 29 86.2 0 .........A......T..........GA | G [256574] ========== ====== ====== ====== ============================= ======================================= ================== 11 29 98.4 33 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : GACCCCCGCATTCATCTGAAGCCGATCCGGCGGTTCGGGATGGTCTTCGTTCCGCTGTCCAGGCGGCCGGGTGGCACTCAGGCGTTCAAGATGATCATCCCCGCTCGGAGTGAACCGCTCGAACCGACCCCGCAGACCCACGAGGGTTTCGAGTGGGTGTACGTGCTCGACGGTCGTCTGCGTCTGGTGCTCGGAGAGCGAGACCTGACGTTGTCGCCCGGTGAGGTGGCCGAGTTCGACACGTCCCTGCCGCACTGGCTGGGTAGTGCCGATGGTGGATCGGTCGAGCTTCTCGTTTTGTTCGATCTGCAAGGGGTGCGCGCGCACGTGCGCACCGGTACGGCCTCCGAAGCTTGAACCCCGCTCCTGTTTTTCGCGGGGGTGTCTAGGCTGATGGGAGTGGTGTTCGGGTGGGCGGTCGAGAAGTGCCGGTTTTGTCTGTTTTTCAACAACATGCAGAAATGACGGGTCTGCTGGGGTAACGTCGCAGGTCAGAAAGA # Right flank : ATGGAGAACTCGACCAGACCGGCCCCCTGGGCCTGAGCCCCACGCACGTGGGGACGGGTCGGGGCTCCGGGCTCAGCCAGTGGTCTCTGCCTGATCCAGGGGTGTGTTCGTGTTCTGCGGGTGGTCGAGCCAGAGGTGGTGTTCACCGTCGGGGGTGATGGTGAGCCCGTAGCGGCCGGTCTCGGGGCGACCGGCCTCCTCCCAATCGGAGAGGAGGGTGGTGTAGGCCGCCCACAGATGACGATCGCCCCGCTCGCTTACCGTCGTCCGTCCTTGGTGGTCCACCTCCACGCGCATCCAGGACCCGGAGGCTCCATCGAGCACCCCATGCACCTGCCCCTCCTGCCGGTGCTGGACCACGCGCAGGCCGTAGGGCAACAGAAGCGACAACAAGAACTCCGAAGAAGCATGGTCGTCCAGCCCCGCGACCTTTTCCACCACACGCACCCGCTCGGCCTCACCACCGGTTACCGACAGCACCTCCGACACGGTCGGAACCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 270079-270229 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000012.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 270079 29 100.0 32 ............................. TCGAACGTGATGCCACAGCCCTTGCAGGTGAT 270140 29 100.0 32 ............................. GGGGTTTCTCGGATCCTGTTACGAAACGCCTG 270201 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 CTGAGCCCCACGCACGTGGGGATGGATCG # Left flank : TTTCTCCCGCCGACTCCTGGCGGAGAACGGTCTCACCCCGGACAGTGTGCTCGTCATCTGCATGCCGTACATGGAAAGGCGCGCGTTCGCGACCACCCGGAAACTGTGGGACCAGGTCGAGGTGGTGTGCGCTTCCGCGCCGGTGAGCCTCGGCGACTACGTCAAGGGGCAGGGGGACGTCGGAGCGGTCATCGACATGATGGTCGGTGATCTTCAGCGGGTGATGGAGTATCCCAAGCTCGGGTTCGCCATCGAACAAGAGGTTCCCCGGGAGGTGCGTGAGGCTTACGAATTCCTTGTCTCTTCCGGGTTCGACAGCCGCTTGATCCGAGGCTGACCGTGCTGTTCCCTGCGTATGCGGGGCTGGTGGAAGTCGGTGGGGTGTTCGTGGGTTCCGGTGGGCTCTGTGGGGTTGTGGTAGGGATGGGTGAGGAGCGGAGGCCGCCCCCTGGTGAAGGTTGCGGGAAGATAACGGCCTCTGTTTTCGCAGGTCATTTTCC # Right flank : GATCCGCCCGTGCTCCACCCACGTGTTCCCGAGCTGGATTGCCGGAGGCAGCGTGTAGTCGCTGTGCTCGCGCACCTGTTCGAGCTGCCCACCGGACACGATGTAGGTCACTGGGGCACCTGCCAGAACTGGACGGCAGTCCGTTCGAGGACCACCGCGCCGTCGCAGTCGACGGGGCCTTCGGGGCCGAGCCGGGTGGCGTTGCGGAGTTTCACCAGCTTCCTCGCCTTGCGGTAGAGGATGCCTCGGAAAGCGGTGCCGTCGTGCAGATTGGCGACCACCTCACGGCGGAGCAGCAGACGCGACCAAGCGAACATGTGGGCCACCCCCTTCGTCTATTTGGGCCAGCCCAAAGGAGAGGGCCAAACATATATCCGTCTTCAGAACGACCGAAATATTCCACATGCTTGCATTTCTCTGTGGGATCAACAAGGATCAACGAACGCACTCCCCTCCCCCGGAGGAATCCCCTTGCGTTTCATCAAGAGCATCCTTGCCGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGATGGATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 4705-3331 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000014.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4704 30 96.7 32 .............................C GCGGCCCCGAACACCGCTCGGACCCGGTGCCG 4642 30 96.7 31 .............................T CTGCCTCGGTGATGAGGTGCTCCAGCAGCGT 4581 30 96.7 31 .............................C GGTCCCGGACGGGGAGGTCCGTGGGCGGGTG 4520 30 96.7 31 .............................C ACCCGGGGCTCGTCAGACGAGCCCCGGCCCA 4459 30 96.7 31 .............................T CAACCCAGGAGCTGTGTTCCAGGCTGCGCGA 4398 30 100.0 31 .............................. ACGAGTCCCACGGCACCGAAGACTACGACGG 4337 30 96.7 31 .............................C GTCATGGCGGCTGCACACGGTTACGCGGAGG 4276 30 100.0 32 .............................. GAGAAGGAACAACGTGTACACCGCGACCTTCG 4214 30 96.7 31 .............................C GGGGCCCCGCTCCGCTCACCTGAGCGGGACC 4153 30 96.7 31 .............................C CCGGGCAGGCGCACCCCACACTCGCACCACC 4092 30 96.7 31 .............................A ACTCCTGACCCGCGCCCAGAACGACAAGCTC 4031 30 100.0 31 .............................. CCCAGGTCATCAGACCTGGGCGTCCGTTTCG 3970 30 100.0 31 .............................. CGATCCTGTGGCCCGCGTACACGCTGGCCGA 3909 30 100.0 31 .............................. CGATCCTGTGGCCCGCGTACACGCTGGCCGA 3848 30 96.7 31 .............................T GAGCTCGGTCGCATGATCGCTCGGGAAACGG 3787 30 93.3 31 ............................GC CATGGGCGACCAAACCGGACGCGAGCCCCTG 3726 30 96.7 31 .............................C ACTGGGACCTGGCCGCCTAAGCCCCTGAACG 3665 30 96.7 31 .............................T CGCCCGGAAGCAGACTCCGGTGAACAGGGGA 3604 30 96.7 31 ..............T............... TGACATGGAGCAGGTACAGACGTGGGCCGAT 3543 30 100.0 31 .............................. CTGTGTTCGGTCATCCTCGGCGGGCTGACCT 3482 30 100.0 31 .............................. ACGCGGCGGACGGGTCGATGTAGACCTTCTC 3421 30 93.3 31 .........................G...T GGCGCACCTGGAGGATGTCCACACGCCTTCC 3360 30 93.3 0 .........................G..G. | ========== ====== ====== ====== ============================== ================================ ================== 23 30 97.3 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CGCTGTCCCGACGACCCTCGTGTGCTGCTCGATCTCGAGTGAGCAGGTCCTGGAGATGGCACAAGGAGGGCATCCCATGTTCGCCGAAGTCGCGAACCTCGAAACCCTCGATGTCGTCGACCTTCCTACGGGCCATTGGCCGATGTGGAGCCGTCCCGGCGACCTCGCCGAGGTCATTCGGTCGGAGGCGTCACGGGCCGGATGAACCACGTATACGAGAGGGAAGGGACGGTCGGTGTGGAGCGCGAGTCGATCACCGCCGACTGAGTTCCACACATGGGGCCTGCCGCAGAAGGTCCGGGTCTCGCCTGTTTCCTGTTCATGTGGGGGTGACCCCGTCCTGTTCGGGGGCGCCGAAACCTCTCTGCTTTTCTCGGGGGTGTCTAGGCTGGTAGGGGAGTGGTGTTCGAGTGGGCGGTCGAAGGGTGTCGGTTTTGTCTGTTTCTCAACAACTTGCAGAAATGAGGGGTGGGCCGGGATAGCGTTGCAGGTCAGGAAGA # Right flank : GATCGTCTTTGCGGCGGCGCATCCAGGTGGCACCGCTCCCCGCACCTGCGGGGATCTCCTCGCCCCGACCGGTACCGGGTCAGCGGCGATCGAGGGACGGCCATCCGGCGGAGGGGCGCGAGTGGTTCCGGACGTCGCGGACCCTTGACAGACGGGAGCCATCAGCCGGCCGCCCCATCTCGAGACCAACCGACGGCCCTGGGGCCGTCCACAGGACCATAAGCAGGGCGGCCTCAGAGGAGCCGGAGGGCCGACCGCATACCGGCGGGCGGCCCGGGTTTCTAGCGTCGAACCATGAACTTCCCCTCCGTTGAAGCCGGTCCCGTGCGTGGCCGGACCCCGCTCCGTGAGCTCTCGGTCTTCGTGCTGGTCGTCTGCGGGCTGGCCTGGCTCGTCTTCACCCCGGTGCTCTTGAACGGTGCTTCACCGAGCGACCCGGCGTTCGCTCTCGCATCCCAGCTCTTCATGTTCACTCCGGCGGTCGCGGCGCTGCTGGTGAC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13571-13018 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000014.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 13570 30 100.0 36 .............................. CCTCTAGGCGACGCTCCTTCTCGATCTCGCCCTTGC 13504 30 100.0 36 .............................. ACCCTGAAAATCACCTCCCAGAGAAATACTGGAGGA 13438 30 100.0 35 .............................. TGGCTGATGAAGACGCTGTCGTCCTCGGTGTAGAC 13373 30 100.0 35 .............................. ACTGACCGTGGACCGTCTGTGCGCCGACTACCCGA 13308 30 100.0 35 .............................. CTGCGGTTGCCGTTGATCCAGACGTGGGCGTGAAC 13243 30 96.7 35 ..........................A... GTCAGGAAGGTGATGGTGGCGCCGAGGGGGGTGAT 13178 30 93.3 35 ....C.....................A... AGCTCGGCCCAGTGCCGCTGCCACCCCTCGACACG 13113 30 93.3 36 ....C.....................A... GTCACCAGATACCGCGTGGCCCGCACGTTGAGCCGC 13047 30 90.0 0 ....C..........T..........A... | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 97.0 36 GTCCTCAAAGCCCGTACAGGGCATGGCAAC # Left flank : GTGGTTCCGGTTCGTCGAGAACGACGAGGAGGGGACCTGGGGGTTGTTCTCCTTCGCCTTCCACAACCCATTCCTGCCCGCCGATCAGGACCTGAGCATCCGGCTGACCGGCAAGCGAGTCGAGAACAAGAACGTGTACATCACCGACGAGGACGTCCACGAACGAACCAGGGCGTGGATGGAGTCGATCCGAGGGCCGGCGTCCTGATACGCGATCGGTCGACCACGTCGCTCCAAGGACTCGAAACCGTCAACGTGGCAAGGAGGTGACCGTCAACACCGGACACGCACACGCCCTGGTGCGAGAGTGGCTCGATATGCTCGCCCGTGGTGACACGTTCACACGCGAGGATCCACGGTTCCGAGGACATCGGGGAAGCCGGAGCCGAGCAGGTGGATTTCAGCGCCGTACCGGCGCGGCGAGCAGAACTGGAGGATCACTGAAGAATTACGCTCACCCACCAGCATTCCAGGGTACTGACCTGCGGCTTTACCCTCGG # Right flank : GTGGTGTCACGCACCTAGTGGAGCCGGTCGATACACCGGTGAGAGCACAGGATGTCGGCGACCCCGTCGAAGTCGATCGTGCCGTAGATCACGGCCGATAGAGCCAGACCACCCCGCACGGCCCCCGACCAACGACACGCGGTCCCGGGAACTTGCCGCTTTACCGTGGCTATACCTGCCCAAGTTGTACGGTCCGTGAAAGATGGTGCACGGACTATCCCGCCTTCGGGTGGAGTGAGAGCTCCGGGCACCGCGTTTTCGAGCAGCTCCATACCCCCGAGCCGACGAGAAGGAAATGATCACCTGGGATCTCCCGGTGGGCTTCACCATCGCCCGCACCACCCACCGACACACGCCCGACGCGTCCGTTCAGATCGTGATTCAGGCACCGGCCGTCGCCCAGGCCGCGCGGCGACGCGCGGTGCACCCAGGAGCCGTCGGTGTCCGGTAGAGCCGGGACGTCGGTGACGTCGTGGCCGTTGTAGAACCGCGCCCCACCG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCAAAGCCCGTACAGGGCATGGCAAC # Alternate repeat : GTCCCCAAAGCCCGTACAGGGCATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 25151-24267 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000014.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25150 29 100.0 32 ............................. GATCGCATTACCCTTGTCATCCCGCAGGGCAC 25089 29 100.0 33 ............................. GCCCTGGCCTTCTTGATCAGGCGCCGGCACAGG 25027 29 100.0 32 ............................. GTCGTCGGTCGATACGGCGACCATGGATGCAC 24966 29 100.0 32 ............................. GGTTCGGGTTCGCCGCCCGGAGCTACGGGCAG 24905 29 100.0 32 ............................. CCGGGGACGATTCTGGCATGTCTGGCATGCGT 24844 29 100.0 32 ............................. GCTGAATCGCACGGCCGGATCGACGACGAGCT 24783 29 100.0 32 ............................. GTCTCCCCCAGCCGGCCGCCTCCCACCAGGCC 24722 29 100.0 32 ............................. GACCCTGACCATGAGATCTTCTCACAGTCAGG 24661 29 100.0 32 ............................. CACCAGTTGTCAGCGAACCCCTGGAACCGGTC 24600 29 100.0 32 ............................. GCCGCCGACCAGGCCCCGCCGCCCGGAGACGA 24539 29 100.0 32 ............................. GCACAACGAAGCCCCACGCCCTGATCAGGGCG 24478 29 100.0 32 ............................. CCGCGGTGCGTTCGCGACTGAGGTTCGAGAAC 24417 29 100.0 32 ............................. TTCTGCTTGTGGCGGGTCATGTCCACGATGGT 24356 29 100.0 32 ............................. CAAATCGGTTCCGGCGTCTGGGAAGCGATCAA 24295 29 69.0 0 .C........T..GT......CA..T.GT | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.9 32 CTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CGTGGTCGTGCCGCGGTACGAGACCTGGGTGGCCACTTCCGAAGGCTCGGTGGTCGGGCTCCTGGCGCTCGACGGTGAGGAGTTGGACCAGCTCTACCTCGACCCGGCGTGGCGAGGACGAGGGATCGGCGATCGGTTCATCGCCCTGGCCAAACGGCGACGTCCGGACGGGCTGGCCTTGTGGACCTTCCAGGTCAACGTGCCTGCGCGGCGTTTCTACGAGAGGCACGGCTTCGTCTCTGTCGAACGGATGGACGGGTCGCGGAACGAGGAACGAGAGCCCGACATCCGTTACCTCTGGAGGCCCTGAGCGTCTTCTGTGCCTCGTGTCCATGGCGAGGAGTGAGGGTGGTGCCTGCCGGTGGGGGAGGGGCGGGGGTGGAGTGCTCTGTCTCGGGCCGGTTCGGGGTGGCTGTGGTAGGGATGAGTAAGGAGCGGAGGTCGCTTCGATCCGGAGGTTGCGGGAAGATAACGGCTTGCGTTTGTGCAGGTCATTTTCC # Right flank : TCTCGAATCGGCCGCGAATGGTGACCATCGTTGCTGCGTCGATGATCGAGCGCCTCGCTGTGATGGTCGGCTGTAACATTTTTGGAGTCGGGGCTACCTCGGTCTCCCATACCAGACCCCTGGCCGTCAACCACCCCATTTGCCGCTACCGGTCACACTCTCCGTTTCCCGGGTGCACCACCACCATCACTGCTACCTTGTTGCTCGCAAGACGGCACCGCACTAACGTGCCCGATGTTCCTCCACGCCTGCCCCGGAGTTCGCGTGCCCACCCAGTGGACACTCACCCTCACACCCCCACCCCCCACTTCGGTCGACCCGCGTCACCTGCACGCCCTCGCCTGCCACCTGCTGGAACCCCCCACCACCGACCACAGCGCCCCCACGAAACCCTTCACTGCGGCCCTCAGTGGTCGTCGACTCGTCCTGGGCCTTTTGGACGATTCCCGTCCCCTCACGAACCTCGCTCTTCTCGACGGGCTGGCGCTGCGCCTGGGGTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 4 32580-32245 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000014.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================== ================== 32579 31 96.8 30 ..............................T ACACGACGCGCATATACGCGCAGTAGGAGG 32518 31 100.0 30 ............................... AGTGGTACGCGGCGCACCCACGCCCCGAGC 32457 31 100.0 30 ............................... GGGCTTCGAGCCCCCTTGCCCTAGAATTTG 32396 31 100.0 30 ............................... TAGCTTTCCGCTACTCGGCGGGCACGCTCC 32335 31 100.0 30 ............................... AATGGCTCGCCTTCCTCTCGGCCGCTGCCC 32274 30 87.1 0 G.........................-..TT | ========== ====== ====== ====== =============================== ============================== ================== 6 31 97.3 30 CCTGAGCCCCACGCACGTGGGGATGGACCGG # Left flank : CGTCGAGCCTCAGCGACGGGCGCGGGCAATGGGCCCGAAGTGCGCGGCGACCGCGCCGAGCATGAAGTGCCGAACCTGCTTCTCGTTCATGGGTACGACCCCGGCGGGTACCTGGATCCGGAACGGGAAGTCGTCCCCGGCACGGACCTGGAAGTCGTCGATGATCCCCTGCGAGAGCAGGAAGATCAGCCCCTCGCGGATTTTCCCGTCGGTGTCGGTGGATGACCACATGAAAAGAGGGTAACCGGCTCTCGGACTCAGAGAAAACGACCCCGCTCTTAGACCGGGGAAGGTAGGAGAGTGGTGATGCTGTGACCGGTGATTTCGTCCCGTAGGTCTCGGTCCGGTCGGTGGTGTTTCCGGAAAGAAGGCCTGCGGTCGGTGAGATGTTCTCCCTGGGGCGGTTCGGGGTCGTTGTGGTAGGGATGAGAGTGAGCAGAGGGCGTCTCTCGGTGAAAGTTGCGGGAAGGTAACGGTCTCTGTTTCCGCAGGTCATTTTC # Right flank : CCACCACGTGCACCTTCAACGGCTGTATCTGCCGACCAAGAACCCGCCGATCCGGAGCCCCCTGCGCGACCACTGCCGGTCAGCGCCTGTGGCAGGTCTTCAAGTAGCTGAGGAACGACGCTTGCAGGCCGGTGACGTGCGTTTCTCGCAACAAGGCCTTCGAAACGTGCTCCGACCACCCCTTGGCGTGCAGTCGTTCCACCGCCGTAAGAACGTTGCGGGACATTCCGCGGTAGAACGGAATGTCTCCGAGCAGTTCGGCCTCGTTCAACGTGATGTGCAGCCGTGAGCCGGCCGAGCCCTCACCTGGTTCCGGTAGGGCGTCGATGAGGGTGAAGATCCGGCTGTCCGAGCCTGCGACGCCGGGGCTGCCCGCGCCGAAGCTCGAGAAGGGCGCCGCCTCACACAGCCATGCGTAGAGGGCGAAGAGTCCCCCGTAGGAGTAGCCGAAGAGGCCGTGCCCGGACTCGCCGACCCGCAGCCTCGACCGCAGGTGCGGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGAGCCCCACGCACGTGGGGATGGACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 5 33720-33387 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000014.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33719 29 100.0 32 ............................. GCGTCTCCTCCTCTTCCTCTGTGGTTTCTGAG 33658 29 100.0 32 ............................. CTCACCGACGACCGTTTGTCCGACGACGGCGT 33597 29 100.0 32 ............................. GTGACCAGGGGCCAGGCGGTGATGGTGAGCGC 33536 29 100.0 32 ............................. CATCCGCACAGCTTCCCGAGCAGTGTTACGCG 33475 29 93.1 32 ..............T..........G... GCGATCGCGACCGCGCTCGGTGTGCCCATGTC 33414 28 79.3 0 ..........A...T......-...CG.A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 CCGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GGCTCTGAGCTCCGCTTTTTCTGTGGCGTGCGGTCCCCACCAGTGCGGATGCCCTCTTTTTCTCATCCTCGGGGTGTTCGGGTAACTCGACATCGACCTCGGTGGGGAACCCTGGCGGCTTTGTTCACCGAGAGAGGAAAGTCGGGGAGTTCGCGCCGGGGGGCGGTCTGGTGGGTATGGGGTGCCTGTTTTGTCGGGTTTTCGGGAGGTCGGGGAAATGGCTGTTCACGCCGGCGCCTCGTCCGGTCGAAGAGGCCGGACCCCGTATGCGGAGGTGGCCCCCTCGCCGACGCTCACGGTCGGGCTTGGGACGGGCCGCTCCCCGTGCGCGGGCTCGGTGCAGGCGGGGCCGGGCCGTCGGTGTTCCAGGAGAGGACGCCGGTGTCGGTGAGATGCTCTCTCGGAGCGGACCAGAGCGGGCGTGGTAGGTATGAGAGAGGGTCGTTTCGAGCCTGAAGTTGCGGGGAGATAACGGCTTCTGTTTCCGCAGGTCGTTTTCC # Right flank : TCCTGAACCTTGCTCTTCGCGCCACCGAGGGGCGATGACCGGGAACACCCCGTTGGAGAGTGGGGGAGAACAGGGGCCGTTCCCCACACCTGAATGGATAAAGCTCCGGACACCTACCTCTATGGGTATGACCAGGGTGGAAATCGGTTCGCGGGGATCGCTTCATGGGTAGGGGAGCGATTCTGGAAACCATGTGAAGGCGTGCGCTTCGTGGACGCTCGAATTCCGTGTTCCGTCTTCGAATCCGAAAACGCGGTATGGAGTGCTCCGGTCGGATCCCGGCCCGCCTTGAGTGGGGGAGGAGAACCGTCGAGCCTCAGCGACGGGCGCGGGCAATGGGCCCGAAGTGCGCGGCGACCGCGCCGAGCATGAAGTGCCGAACCTGCTTCTCGTTCATGGGTACGACCCCGGCGGGTACCTGGATCCGGAACGGGAAGTCGTCCCCGGCACGGACCTGGAAGTCGTCGATGATCCCCTGCGAGAGCAGGAAGATCAGCCCC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 39207-39664 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000008.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 39207 30 96.7 31 .............................T TCTTCTCCGCGGCCCGGTTGGTGATCTGCTC 39268 30 100.0 31 .............................. ACCTCGCCCCAGGTCGAAAACGACCGCCCTT 39329 30 100.0 31 .............................. AGCCCCAGGAGACCGTGCTGGTGCGCCATGT 39390 30 96.7 31 .............................A GCACGCACGAAACACGAAGGAGCCCTCATGG 39451 30 100.0 32 .............................. ACCTCAGCCCCAGCGTCCTGGGCCAACTCAGC 39513 30 96.7 31 .............................T ACGTGACCGCGTACCTGGACGAGAACCCGCA 39574 30 96.7 31 .............................T CGTCGTGGCCCTCGGTCGCCTTGGTCGTGGG 39635 30 86.7 0 G....................T......TC | ========== ====== ====== ====== ============================== ================================ ================== 8 30 96.7 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : TCATCGCCAACGCCCGCGGAGACCTCCTGCTGCATCTGCGCGATGACCTTCCTCAGATCGCCTGGCCCGGTCATTGGTCGGTGCTGGGCGGTGGGTGCGATCCGGGTGAGAGCCCACGTCAGACGATCGTGCGCGAACTGGACGAGGAGGCCGGGTTGGTCGTCGAGGACTTGGTCGAGCTGTTCGAGGTCCCCGATGTTCACGGGTCCGGGCGGCTTCTCACCTTCTACGCCGGAGTGTGGGACGGAGACGCCGAGGCCCTGCCGCTGACCGAGGGGGTCAAGCTCGCCTGGGTCGCCCCCGATCTTCTCGACACCCTGCTGATGCCGCCCTTCATCCGTACCGCGCTCTATCGCTATCTGGAGGATCGTTCCTGACCACGGCGTTGGCCTGAACGCGGTCGGCTTCGAACGGGAGGGCGAGGGGTGTCGGTTTTGTCTGTTTCTCGACAACATGCAGAAATGACGGGTCGGCCGGGATAGCGTTGCAGGTCAGAAAGA # Right flank : CACTCCTGTCCACGTTCATGACAGTCCCTACCCCTCATCCGTAAGCCAGGTATGCCAACGAAGAGGATCGCGGACGACCTGATGAGGTCGGTGGCCCGGATGCTTTCGGAGGGCACGATCTCGCCCCGGTCGAAGCGCGAACTCGAAGAGGTGTCTTACGCTCTTCGCACGGTTCAACGGCGCTGGAAGGGTTTCCAGAATGGGCGAGCAGCAGGACGTGCGGGCACTGGACTACCTGTACGAGGCCGGTCTCCTCAAACGCTACAAGCGGACCGGCTGGGTCGTTGCCGGTGTCCCTGACCCGGAGTCGATAGCGGACCACTCGCACCGCACCGCCCTCACGGCGGCCGTCATCGCGGAGCTCGAAGGCGCGAACCCAGAGCGCGCCGCGTTCCTGGCCCTGTTCCACGACACTCAGGAGACTCGGCTGACGGACATCCCCTACATCGGGAAGCGGTACCTGAAGGCCTCCAGCAACGCGGAGGTGACCGCGGATCAGA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 44241-44881 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000008.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44241 29 100.0 32 ............................. CGCTCTTCGATGCGGTCGCCAAGGGATTCAAG 44302 29 100.0 32 ............................. ACCCGGGCCCGAGCGGCCGCTCGGAGCAACGG 44363 29 100.0 33 ............................. ACCATCCACGCCCGTCCCAACCGGCGCTACTTC 44425 29 100.0 32 ............................. CACATCCTGGCGGACCATCCCGTGTCCAGGTT 44486 29 100.0 32 ............................. CGGCGGGGTTTCTTCGTTCCGTGTTCCATCGG 44547 29 100.0 32 ............................. GGCCGAAGAGATACAAAGGCTCACTCATCGAG 44608 29 100.0 32 ............................. CGCCAGGTGCAGCGGGGCCTGGCCGACGCCGA 44669 29 100.0 33 ............................. TGGGTACACGGACACGCCGAGCCTGCCCTGGCG 44731 29 100.0 32 ............................. CCGACCGAATGGGGCATCGCGCCGCAAGCTCG 44792 29 100.0 32 ............................. GACTTCACCTTGCCCGTCCTCGGAATGGGCTA 44853 29 72.4 0 ............G.T.T.......GGTGG | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.5 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : CAGTAGGCCGGTCGCGGCGTGGGAGGTGCCCATCATGAGAGGGGGTCGCTTTCGTGCCGTAAGGGGTGTTCCGCACCTGTTCGGGAGAGTCCGAGGGTAGATGTGGGGCGGCAACAGAATATGGACACTTTTGTCTTCTTGTAGAGGGAAAAGGTCCTTATAGCGCCTCTGAGGTCGAACGGGGATCTGAGCTCTCACACGTGGGGGTGGTCTGAGGTCAGGGTGCCGTGGAGCTCATGGCCGAGTGGTCCTCCGAGCACGCGGGGATGACCTCGTACATCAGCCGATCGAGGTGGGCAGAGGGGTCTGCTCTTCGCGTATGTGGGCCGATCCCATCTCGTTGAGGTCGGCCCCGGAACCTCGCCCCTGCTTTTTGTGGGGTGTCTAGGCTGGTGGGGATTGGTGTTCGGGTGGGTGGTCGAGGAGTGTCGGTTTTGTCTGTTTCTCGACAACGTGCAGAAATGGCGGGTCGGCTGGGATAGCGTCGCAGGTCAGGAAGA # Right flank : GAGTGGTCGTTCTGGGCGTGGGGAGGCCCCGGGAGTTGGCTTGGTGCTTCCGGGGCCTGGTTGGTTTTGGGGTTATCGGGTGAGGGTGGTGAGGAAGGCTGCCCATTCGTCGGTGGGGAAGGGCAGGTGGCCGTCCGTCCTTCGTTTGGTGTCGCGGATGGCGGAGGTGCCGGGGATGTCGGCGACCTCGACGCAGTTTCCCTGACTTCCGGAGTAGCTGGACTTGCGGAAGTTCAGGGGGTGGGTGGTCTCAGGCATGGTGGGCCTCCGCGCGGCGAGCGGTGGTGAGGAGGGCGGTCCATTCGCTGCTGCTGAAGGTGAGGTGTCCTGAGGCGGGGTTCTGTGAGTCGCGGATGGCGGAGGCGCCAGGGATGTCGGCGACCTCGACGCAGTTGCCAGTCGGCTGACTGTAGGAAGATTTGCGGAAGGTGAGGGCTTCGGCCTGGGGGAGGGGCATCGTCCATCGCTCCTGAGTCGGGTGCTGGGGGAGCCTCAGGGTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7429-7732 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000023.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================================================== ================== 7429 29 75.9 123 .....T..G...TG.......C..A.T.. TGGGGTGTTGGTGAGTTCCGGTGGGTCCTGTGGGGGTGTGGTAGGGAGGCGTGGTGAGCGGAGGCTGCCTCGTGGTGAAGGTTGCGGGAAGATAGCGCCTTCTGTTTCCGCAGGTCATTTTCC G [7455] 7582 29 100.0 32 ............................. CGCGAGGGGCACGGACCGAGGAACCCGGGGCG 7643 29 100.0 32 ............................. TTCAACATCTTCGCCGGGTTCCTGGCGCCCAC 7704 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= =========================================================================================================================== ================== 4 29 93.1 63 CTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GGTTCCCCGGTGAAGGGGTGGCAGAGGTGGGCTCTTCCATGAGGAAGGAGACGACCGGTGACTGACCGTTCGGAGGCCGTGATTCCGCGGGTGCTGTTCGTGTGCGTGCACAACGCCGGACGGTCCCAGATGGCCGCTGCCTTCCTGGAACACCTGGGTGGCGAACGGGTCGAGGTGCGTTCGGCCGGTTCCGCGCCGGCCGACGAGGTCAACCCGGCGGTGGTGGAGGCGATGGGCGAGGTCGGGATCGACATCACGGCCAGTGTCCCGAAGATCCTCACCCCGGACGCGGTCCGCGCCTCGGACGTGGTCGTCACGATGGGCTGCGGCGACGCGTGCCCGTTCTTTCCCGGAAAGCGTTACCTCGCCTGGGAGCTGCCCGACCCTGCGGGGCAGGGTGTCGAGGCGGTCCGGCCCATCCGTGACCGGATCAGGCGGCACGTCGAGGACCTCTTGCGGGAGCTTGTTCCGTAAGCGGTCGGAGTCGCTGAGGGCCACCG # Right flank : CGCGACCAGGTGGGTTTCCTCCAGCGGCTCGAACTGCTCCCTGCGCACGCGGGGGCTTGGATGCACCAGTCCTACTACGACGTTCAACGTAGTGCCTGAGCCTTTGGGTGGCCGACTCCGGACATTCTCTGCCATCGGATCAACACGTTAGGTAATCTCCCCTCGACCCCCAGGGATGACGAGGAGCCTTGCCGTGTGCCCCTTTTGCCAACGCCGTGTACGCAAGCGCAAAGACAATCCCGACCTGCGTCTTCTTCACTACGTCAACGTCTCTCACGTCTTCAGCTTCAAGTTGAAAAAGTGCCAGGGATGCGATCCGAACGGCTGCAACCCTGGATGGTCGACCATCCAGGACGGAAAGAAAAGCGGGATCCGCTGCCAGGCCTGTGGGAAACGTGTGAAGGAGACTAAGACCTTCCTGCCGGTCAAGCACACGGACCAGCGCGGTGCTGTCTGCCCTGGGTGGCGCGACAACCAGCGATGAGCACCCGCGCGAGACA # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 671481-671024 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000003.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 671480 30 100.0 31 .............................. CGTGGTCCAGGCCCTCCTCGGGCAGGCGGCC 671419 30 100.0 31 .............................. GGCCCAACCGGGGCGACTCCGCGATGATCTG 671358 30 93.3 31 .....................A.......C TCGACGGCCTCCTCGTTTCGCGGCTGATCGT 671297 30 86.7 31 .....................A...A..TG CGACCGTTCACTTCGGGTTCGGGCTCACCGG 671236 30 90.0 31 .....................A...A..G. GGATCGCGCTCGCGTCGGCGCGGGCTGCGGT 671175 30 73.3 31 ...AG....A......T....A...A..GT AGTACACCGGCACCCGAAAGGTTGGGTTCTG 671114 30 83.3 31 ...AG................A...G...T CGGCGGTGACCTTCGCAGTGGCTGGGGCTAG 671053 30 70.0 0 ............G.T.T....T..T.TTTG | ========== ====== ====== ====== ============================== =============================== ================== 8 30 87.1 31 CTGCTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CGGCGACGGTGGCCAAGAAGATCGCCCGTTAGGAGGAGTTGCGGGAGGGGCTTGCTCGTTCACGTTCCTGCTCACCGAACAGGCGGTGCGGTGGGCGATCCTGTCTCCTGAGGGGATGGCCGAACAGGCGGCCCGTCTGGTGGAGGTCTCGCGGTTGGAGCGGGTGCGACTGGGGGTGATCCCCCTGGGGGCCGTGTTGCCCAGGGGGCCGATGAACACCTTCACCATCTACGACGACAGATTCGCCACGGTGGAGATCTTCACCGGACGGCTGGCGTTCCGTGAGCCGCAGGACGTGGAGACCTATCGGGAGCTGTTCGTGATGTACGAGGAGCACGCGCTGTTCGGAGACCAGGCCCGTGAACGGATCCGCTCTTGGTTCGAGGTTTGAGAGAGTGGGTGGTGGTCGAATGAGGGGTCGAGGGGTGTCGGGTTTGTCTGTTTCTCGGGAAGTTGGAAAAACGGCTGCTTGCCGCTGGTAAGTTGCCAGGTCAAAGAGT # Right flank : GGCGTGGGAGGCCCCGGGAGCTGGTGCTTCCGGGGCCTGGTTGGTTTTGGGGGTTATCGGGTGAGGGTGGTGAGGAAGGCTGCCCATTCGTTGGTGGGGAAGGGCAGGTGGCCGTCCGACCTTCGCTTGGTGTCGCGGATGGCGGAGGTGCCGGGGGTATCGGCGACCTCGACGCAGTCGCGATGAGTACTGCTGTAGCTGGATTTGCGGAAGTTCAGGGGGTGGGGGGTCTCAGGCATGGTGGGCCTCTGCGCGGCGGGTGGTGGTGAGGAGTGCGGTCCATTCGCTGCTGCTGAAGGTGAGGTGTCCTGAGGTGGGGTTCTGGGAGTCGCGGATGGCGGAGGTGCCGGGGATGTCGGCGACCTCGACGCAGTTGTCACCGGACCCGCTGTAGCTGGACTTGCGGAAGGTGAGGGCTTCGGCCTGGGGGAGTGGCATCGTCCATCGCTCCTGAGTCGGGTGCTGGGGGAGCCTCAGGGTAACCCGCGGGTTCAGGAACG # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : CTGCTCCCCGCGCACGCGGGGGTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1115-842 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000001.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1114 29 100.0 32 ............................. TCCTCGGAGCTGTAGGCGGACGCGGGGATCAA 1053 29 100.0 32 ............................. GACAACACCTGGCCGCCGGTCGCGGTCTCCTC 992 29 100.0 32 ............................. GCGGCGCCATATTTAAATATGCCCCACGCTTT 931 29 96.6 32 .....T....................... ACCTTGGTGACCCCGGCCCAGTCGGACTCCCA 870 29 79.3 0 ....A....G..T...C........GA.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 CTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GGTGTTCGGGTGGGTGGTTGAGGGGTGTCGGGTTTGTCTGTTTCTCGACAACTTGCAGAAATGAGGGGTTGCTCGGGATAGCGTTGCAGGTCAGGAAGACTGCTCCCCGCATGTGTGGGGATGGCTGCTGTCCATGCACCCGGACGCGGGCGACCCCTGGCTGCTCCCCGCATGTGTGGGGATGGCTGCGGCCCCTGGCCGCGGTGGTCCTCCGCTTCCTCCTGCTCCCCGCATGTGTGGGGATGGCTGTCCTCTCAGGAAATCGGCTAGTCCTTCTGTATCCTGCTCCCCGCATGTGTGGGGATGGCTGACGGTCCCAGCGGATGCCATGCTTCGCCGACGCTGCTCCCCGCATGTGTGGGGATGGCTGAAGTCGGTGGGGTGTTCGTGAGTGCCGGTCGGCTCTGTGGGGGTGTGGTAGGGATGAGTGAGGAGCGGATGTCGCTTCGTGGTGAAGGTTGCGGGAAGATAACGGCCTCTGTTTCCGCAGGTCATTTTCC # Right flank : CCGCATTCGGGAAGGCGGGAGGCTGACACAGAAAGCCTCTGGCGGTCGGATCATGGGATGAATGACGTCACAAGTTCTTTTTCATTCCACCGACATCGCCTTCAGGAGGAGGCTAGGGTGTCTGTGTGGGTCGGATGTCTCATGGAAAAGCAGTAGCGATAGTCGCCGCATCCTGCCTGATGCAGGCGACCGCAGCGATGGCCGGATTCACCGCCACGCCGACCCTGTGGCAACTAACGATGCTCTCGGCCACCACCCTCCTTGCGGGGGGAGTAGCTTACCTGGGCGTCTTCTCAAAAAATCGAGTTATGAGACGTGGTAAAAGAGCCGCGGCTAAGAGCTCATCTCAAAAGCCCTGCGAGACGACTCTGAACCTGCCATGATCACGGACTGTGAGTGATGTGTTGCCCGATGGGCTCTGGGAGATCGTCCAGCCGCTACTGCCCTCGCCGCCGAAGACCGGCCGCCCCCGCGCTGACCAGAGAGCAGTGCTGACCACC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 1516-1245 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000001.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1515 28 100.0 33 ............................ CTGTCCATGCACCCGGACGCGGGCGACCCCTGG 1454 28 100.0 33 ............................ CGGCCCCTGGCCGCGGTGGTCCTCCGCTTCCTC 1393 28 100.0 33 ............................ TCCTCTCAGGAAATCGGCTAGTCCTTCTGTATC 1332 28 100.0 32 ............................ ACGGTCCCAGCGGATGCCATGCTTCGCCGACG 1272 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 CTGCTCCCCGCATGTGTGGGGATGGCTG # Left flank : TGGTGAGGGTCTGTGGTGATGCGCTTCCTCGGTACCGTGGACACAATGTCGCGGTAAGCGAGGAGGAATAGCGAGTTTCTGAGACACCGATCCAGCACTTCCGAGTAGACCAATACCTCTGGGACGCCGGCCTCGTCCGAGCTGCCCGTGAGGGAAGCTTCCTTCCATCTGTGCTGCGCGCCTACGTGGAAGGGTGCTCGTGATGGACGTCGAAGATCGCATCGCGGTCTTGCCTCCGGAGTACCGGAGACGGCCCGATGGGTAGGGCGCACGGACGTCTGCTCCGTTGGGGCGAGATCGAGCGGGATCACGGTATCCCGCGGGGAACCCTGAAGTCGTGGGTCCGTCGGGGCCACCTTCGCCTCTGTTCCTCACGAGGATGTCCAGACTGGTGGGGGAGTGGTGTTCGGGTGGGTGGTTGAGGGGTGTCGGGTTTGTCTGTTTCTCGACAACTTGCAGAAATGAGGGGTTGCTCGGGATAGCGTTGCAGGTCAGGAAGA # Right flank : AAGTCGGTGGGGTGTTCGTGAGTGCCGGTCGGCTCTGTGGGGGTGTGGTAGGGATGAGTGAGGAGCGGATGTCGCTTCGTGGTGAAGGTTGCGGGAAGATAACGGCCTCTGTTTCCGCAGGTCATTTTCCCTGAGCCCCACGCACGTGGGGATGGACCGTCCTCGGAGCTGTAGGCGGACGCGGGGATCAACTGAGCCCCACGCACGTGGGGATGGACCGGACAACACCTGGCCGCCGGTCGCGGTCTCCTCCTGAGCCCCACGCACGTGGGGATGGACCGGCGGCGCCATATTTAAATATGCCCCACGCTTTCTGAGTCCCACGCACGTGGGGATGGACCGACCTTGGTGACCCCGGCCCAGTCGGACTCCCACTGAACCCCGCGTACGCGGGGATGGGACGCCGCATTCGGGAAGGCGGGAGGCTGACACAGAAAGCCTCTGGCGGTCGGATCATGGGATGAATGACGTCACAAGTTCTTTTTCATTCCACCGACATC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCATGTGTGGGGATGGCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 9519-8783 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000001.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================== ================== 9518 29 72.4 190 T..G.T.....T....C.......AT..T GTCATTGAGGGGCCGTTCGAAGACATCGAGGCCTGCTCCCCGCGTGTGCGGGGATGGCTGAAGTCGGTGGGGTGTTCGTGAGTTCCGGTGGGCTCTGTAGGTGTGTGGTAGGGATGAGTGAGGGGCGGAGGTCGCCTCCTTGTGAATGTTGCGGGAAGATAACGGCCTCTGTTTCCGCAGGTCATTTTCC 9299 29 100.0 32 ............................. GCGGCCAGGACTTCCGGGGTGACGTGCTCCAG 9238 29 100.0 32 ............................. CCTTCGGCCGGTTGGAGAAGCGTCGACTGCTG 9177 29 100.0 32 ............................. GTGTTCTCCTTCCTCGGTGGTTGTGGTGGTGG 9116 29 100.0 32 ............................. ATGCGTCGGTCGGCTGAGACGGGGACGTCCAG 9055 29 100.0 32 ............................. GAGGACGAGAACCAGCTTCTCCAGCCGCTCGC 8994 29 100.0 32 ............................. CTCCCGTAGAACGTCAGCCCCAGCAAGAGCGG 8933 29 100.0 32 ............................. GCTGTCCCGACTTGCTCGGAGACTGCAACACG 8872 29 100.0 32 ............................. AAACTTCGGGAGATCATCCGCGAGGACATCAC 8811 29 93.1 0 .........................GT.. | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================== ================== 10 29 96.5 50 CTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : TTCGCTCCCACTCCATGTCCTCGGCTCGGCCCTCCACCCATGTGATGTCGTCGCGAGTGCGTGCCCGGTCGAGTGAGGCGTCGTCGGGGTCGATTCCGCAGAGTCGTCCGGTGTGCCCGCGCTCGCGGGCGCGGTGCAGCAGCATGCCGGTACCGCAGCCGACGTCGAGGACGGACGTAGAGGCCATGACGTGGGAGAGGTAGAAGTCATCGCTCGGGCCCCAGGGGTTGAGGATGTCGTAGAGGGCGGCCGCATCGGCGTCGGAGTACATGGCGACAGTGTGTTGTCGGGTGCCCTCGTTTGGCCAGGGTTTTTTGTCGGAATCGTCCGCCCGGAGCAGGGGGCGAAGGAGGTGGGCTGCTGACATCTTTACTGCGCCGACCACCGACACGTTGTCTGAGTTGCCACTGACATCCCCGCTGCGCTCGGACAGGTCGGGGCCGCACCCCCGTATGCGGGGATGGGCTGGTGTAGCTCGCCGAGTATGAACGAGACGAGGC # Right flank : TCTGCGCCTCCGACGTTCCCGACGTCCTACTCTGCGACTCCTGTCTGAACGCGCTCACCGGTGTCTTGGCCGCCGCCCCTTACCGCTACCCAGCGCCGCCCGGGGCCGTCGCGTCCGCCCGAGCCACGCTGAGGGGCACCCGTGCCGCTCGCCTGGCTCTGGTACCGCTGCTGGGGGTGCGGCGGCTTACCGAGCGGTGTTCGCAGTGTCAGACGAAGGACCTCACCCGGATCACCGAGCGAGGCCCTGTCATGTGTGGCCACTGTGGCCTGAGCGTGCAGGAGGCCAACCAGTGAGTGAGGTCAAGAATGGGCGGGTTCGCTTCGCTCTGCACGCACCTGCCACCCACTGCCCTCCCGGCGGAGCACAGGGCGCACCTGCGCCCATCCCGGGCAGCCGGCGGTTCGCCACTCCTGGACCCACCCGCGAGCCGTGGACTCAGCGGGGGCGCCGATGGTGAGAGCATCTAGCCCGACCGGTCGAAACAGGAAGGCACCGGC # Questionable array : NO Score: 4.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-1.77, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 4 11643-11854 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000001.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11643 29 100.0 32 ............................. GGTCGACGCCCAGGTCGAGAAGTGGACCCAGG 11704 29 96.6 32 A............................ CCACCACCACAACCACCGAGGAAGGAGAACAC 11765 29 100.0 32 ............................. CGCGACAGCCTGGTCTGGGCCCGAGCCATCGG 11826 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 CGGCCCAGCCCCACATGCGTGGGGCTCAG # Left flank : CCGCGCGTATTGAACTCGCGCGAGATTATGCGAACCAGCACGTCACCGGTGCTTCTTTGGTCAAGGATTTCACGGCCACGTGGCAGCGCGTCGAGGAAATGAGCCGACAGGAGTCTGCTGGGCGCGTGGTGAGAACGCGGCACGGCGATGCCATGTTGCTGTCCGATTTCCTGCTGACGCGGGTGGTCGAGGTGGCCGTGCACGGCCTGGATCTGGCGGACGCGTTGGAACGCGACCCCTGGCTGACCCCGGAAGCCGGCTCGGTCCTGCTGGATCTTCTCGCGGGCCCTGATCACATTCCAGCCATCGAAGCGCTGGAATGGGACCCGGAAGTGTTCCTGCGCAAGGCGACAGGACGCGCGGACCTCACCGACGAAGAGCGAGCCGAGGTGACGAGGCTCGGCGTTCAGTGGCTCACGCTCGGCTAGTGCTCTGGCCGGAAACATTCACCCGAGTGCCCTCACCCCGCGGTCGCCAAGGGGTGTTCTCCCCGCCCGGTC # Right flank : GGGAAAATGACCTGCGAAAACAGAGGCCGTTATCTTCCCGCAACCTTCAACCGGAAACAACCTCCAGCCGCCCACCGGCTCAGCTCAGAGTCAACTGATAGACGGCTCGGCTACGGCCCGGCCCCTTGAAGTCGGTGATGACGGAGACGCCGTTGATCTCGTGGTCGCCGGGGACGTTCGTGAAACCGAGGGCGATCCAGCCGGCGTGCGCCGCCTGGTTGTCGGGTTCTGAGGTGAGGTAGAGACGCCGACAACCCCACTTCTCGGCCTGGGAACGCACGTTCTGCAAGAGCGCTCTGGTGATACCGCGGCATCGGTGATCGGGATGGGTCATGACGTCTTGCACGTAGATGTCCGCCGGGTCGTCCTGGCTGCGGAAGGCGATCACCGCTCCGGCGACGGTGTCATCGGTGTTGATGGCGACGGGGCAAGTGGAGGAGAACAGGGTGGCGTAAAGCCAGTAATCGGACAGGGTACGTGCGGAGATGTACGGCTCGCCG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCCCAGCCCCACATGCGTGGGGCTCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 457492-457159 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000002.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 457491 29 100.0 31 ............................. GCGATCACGTGGCGCAGGATGCGTGCGTTAG 457431 29 100.0 32 ............................. CCGGCGGCGACCCAGCCGATGAAGAACCCTCC 457370 29 100.0 32 ............................. CCGGCGGCGACCCAGCCGATGAAGAACCCTCC 457309 29 100.0 32 ............................. GCCGCGGCGCGCGCACTCTCCGGCGCCGGATA 457248 29 100.0 32 ............................. TCTCCGAGGCGGCGGCCGGCGTCCTTGGTGGC 457187 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GGGTGGGTGTGCCGCAGTACGAGGAGGCCCCGATCGGCTTCGCGAGCCTGTTCCGGCACAACATCCGCTTGGCCGGCGGGCCCGCTCCAGTGCGCGCCTACATCGAGGAGCTCCTGCCCGACATCCTCAACGGGACCATCGAGCCGGGGAAGGTCTTCGACACCACCACAGACCTGGACGGCGTGCCCGCCGGTTACCGGGACATGGACGAGCGCAAGAGCCTGAAGGTCCTCATCAAGCCCTGAGGTGTGTTCGCCCGGTCCGCTCGCCGTGCCGGTGGGTGGGCCGGGTGGGAGCCAGGAGGATGTGGAGGGTGGGGGAGTGGTCCTTGCGTCGGTGTGCTCGGGTTCTCCTACGGGCTCTGATGTTCGTGAGAACATGGCGAGAGGTGGAATCGGCGCCACGCAGGGTTCCGCGATGGGTCGCGGAGGCCGATGGTTTCTTAACCGGCCGGTAGGTCTCGCTGAGATAACGCCCTGTGTTATCGCAGGTCATTAAGC # Right flank : AACCCCGGCCCGAAACTGTCCGCCTACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 2 468701-467318 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000002.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 468700 29 100.0 32 ............................. AGCTTCTTCGGACTCGGCTCCACCCACGACAT 468639 29 100.0 32 ............................. CTCGTCGCCCGGTTCCCCAGGGGCCAGAAGCT 468578 29 100.0 32 ............................. CCGAACTGGTCCTGGACGCCATCGAGGAGGAC 468517 29 100.0 32 ............................. TTCTTGTGGCATCTGGCGCTTCGAGCGAAGAC 468456 29 100.0 32 ............................. CTGCGGGACCTGCAGCGGGCGGTGGCGATCGA 468395 29 100.0 32 ............................. GGATGGACACCACCCTCGCGCTTCCCGAGGAC 468334 29 100.0 32 ............................. AGCACTACGACGATGCTGTGCGCGGCGACCAT 468273 29 100.0 32 ............................. TAGACGCCCTAGGTTGCCCCACATGGTGATCT 468212 29 100.0 32 ............................. GATGTCATCGCCAAGGCGAAGCGCATCCGATC 468151 29 100.0 32 ............................. TCCGCGAAACCAACCGGCCCGCCGATGATCTC 468090 29 100.0 32 ............................. AACACCGAGGGGCCATCGACGGGGTAGGTCTC 468029 29 100.0 32 ............................. GTCGAGCATGCTGTGCCTTTCCGCAGGTAGAA 467968 29 100.0 32 ............................. ATCAGGACGGCGTCGACCAGGAGGCCGATCAG 467907 29 100.0 32 ............................. ACGGTCGAACAGGCCTCCGCCCCCACCGGCAC 467846 29 100.0 32 ............................. GCCGCCTGGACACGCGACTCCAGGAACGAGTC 467785 29 100.0 32 ............................. TGCCGCACCTGGGCGCGGTAGGGGGAGAGGGT 467724 29 100.0 32 ............................. ACGTGCTCCGGGAGGGGGTTCGAGAACGTGCG 467663 29 100.0 32 ............................. GTGAGGACGCCGTCAAGCTGGCCTGCGCGATC 467602 29 100.0 43 ............................. ATTCAGGCGCTGCTCAAGAGCGGCGAGATGGTGGAGAGCACGA 467530 29 100.0 32 ............................. GCACGGGAGGACTCGGCCGCCACGTGGAGGCC 467469 29 96.6 32 ..............T.............. GCAGCGTCCAGGCTGGTGTCACCTCCTGCGGC 467408 29 96.6 32 .......T..................... GAGGGCTGGCTGAACATGGCCCGGCTCCTGGC 467347 29 86.2 0 ........T...T.........G...A.. | A [467323] ========== ====== ====== ====== ============================= =========================================== ================== 23 29 99.1 33 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CCGGGATGCGGGTAGGCGGGGTAGGCCGACAGGTCGAGGTCGATCTGCTCCTGGAACTCACGGATGAGCTTGCCGATGTCGTGACATCCCGCCCAGAAGGCCACCAGCGCGCGAGCGTGGTTCTCGTCCGTGCCCAGGCCCGCCGCGATCCGGCGCTTCAGACCGGCGGAGAGCACGACGTCCCACAGCACGAGGGCGGCGGCGGTGGCGTCGAGGGCATGGAGGGCGTAGGGGTAGCGGTGGCCGCGGAGGTGACGTTCTTTGGCCCAGAGACCGAGGTCGATGCGTGAGTGATCATCGCCAGGGTCTGGGGGAGTGGGGGGAGCGGATGACATTTCGGGGGTGCTCCAGGGGGTATGAGAGCATCGGATGAGGCCAAGCTAGCGTTCCGGTGGGACGGTCTGTGTCGGTTTTGCGAGAGGTGGCCGGGAGCGGCCATTTCTTAACCGGCCGGTAGGTATCACAGGGATAACGGCGCGCGTTATCGCAGGTCGTTAAGC # Right flank : CCAAGCCCCGGATGGCCTCGCAGGTGCGGCACGACCGGCTCGCCGACAGGATCGACGGCCGGCCGTGGAGTGGCCGAGCGGGTCGTGCTCTCACCACCGGATCAGCGCCCGAGCGACCGTGGGAGGATGCTCGCGTGATGCCAGAGCCCAGCGCGACCTCCCATCCGCTCGACCAGCATCGCGACCCCTCCGAGGCCGCCTTCGTTCGGGGCCTGGCCGCCGAGGTGGCGGCCCGCTACGGCGGTGAACTCACGCGGATGCGGCGAGCGAACGGGTACTCGAACGCGACGTGGGTCGGCGACGGCATCGCCGTGCGGATCGCGCATACACCCGTCGGCATGGCTCGCGAGGCCGCGCTCGTGCGTGCTCTGCCACGAGAGGTCGCACATCCGGAGATCCTCGGGGAGGGCGTTACCGAGGGCCACGGCTGGATCGTGACCGCGGAGGTGCACGGCCGGAACCTGTACGAGGCATGGCCGACGCTGACACCTGTGGAGCAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 479068-478245 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000002.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 479067 29 100.0 32 ............................. CCACTCCAGGGCCGCGTCGCCGTCCAGGGGGT 479006 29 100.0 32 ............................. GCGAAACCCCCCAGTCGTTCCTTCTGGCGCTC 478945 29 100.0 31 ............................. GTCGAACTCCCCCACGACGGCCAGGTCCTGG 478885 29 100.0 31 ............................. CGGTGAACCGGTCGATGGGTGGCGCGGATCG 478825 29 100.0 32 ............................. GCGCACCCGGACCTGATCGCCGAGTACACGCG 478764 29 100.0 31 ............................. TCTTCGGTGGGGGTCATGCGCGCAGCTCCCA 478704 29 100.0 32 ............................. ACCGCCCACACCCCCGGGGTTCTCCAGGGTGA 478643 29 100.0 32 ............................. CGAGTCACGATCGTGCAGAGGTCCGGCGAGCC 478582 29 100.0 32 ............................. AGCATCGCCCAGCGCGCCGAGGACCTGGCAGC 478521 29 100.0 32 ............................. AGGACGCACCTACGGTCCGGACAACCACATCC 478460 29 100.0 32 ............................. GTGTGGCGTAGCACGTGCGGCCCGAAGGCCTC 478399 29 100.0 32 ............................. ACTATCGGGCAGTGGGTGAACAGATCGGCCAC 478338 29 100.0 32 ............................. AATCCGGCCAGCGCGTCCGACGTCTCCCGGTA 478277 29 93.1 0 .......................A....C | C,G,GG [478249,478252,478254] ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : TGACCGGGACCGCGGTGGGCGCGAGCTCTGAGGTGATCGCGCTGTCCGTGGCCGCCGGGCTCGTCAAGTCCGTGGTGGTGATGGTGGGGACACCGCTGATCGCCCCGCTGATCGGACTGAACAACCCCAAGTCCGCGATGGTCTACGGCGGCCTGATGGGCACCACATCCGGTGTGGCGGGCGGGCTGGCGGCCACCGACAAGCGCCTGGTGCCCTACGGCGCCATGACCGCCACCTTCTACACGGGCGTGGGATGCCTGCTCGGGCCGTCGCTGCTGTACGTGGTGCTCAGGGCCCTCGTCGGAGGGTGAGGTAGGGCGGGTGCGCGGCCCCCGGGAAGGCCGGATCGGCCGCGCATCCGCTCCAGTGTTCGTGAGAGTATGCCGGGGAGTGGAAGCGGCGCTGGGCGCTGCCGGTGAAGGACGGCCGAGGCCGGCTGTTTCTTAACCGGCGAGTAGGTATCGCGAAGATAACGCCCCGCGTTGTTGCAGGTCATTAAG # Right flank : CGGATGCCTACGTCATCCGGGACACTCGTCTGTGGCACCTCGACGTCGAAGAGGCCGGGCCATGTCTCCATGGCCCGGCCTCTTCGACCATCATCGAGCGATCGCGATCCGCCGCCCCGGTACCCGCTTCCCGCGAGCAGCGAGCCCTACCGGGCCGCGATCACCTCGCTTCCGCCACCTCACCACCGATCCGGATCCGGCCCCTCCAGAGGCAGGTCATCGAAGGGGGTCTCCTCCAGCACCGGCGCCGAACCCGACTCCGAGCCCGGATCGCCCTCTCCCCACCCCTCGACCGGCGGCTCCGGGGCCTCGGGCAGCCACTCCGCGTCCTTCTTCTCGATCGGCGCCATCATCTGGATCAGCTGAAGACCGTCGAAGTCCAGCACCCTCCGGCGCCGCTCGCCCGCCGTGAGCACGACGTAGCCCTGCTCGTTGTCGGCGGGGTGCAGGCACACGGCCGCCCCCTCGCCCACGGAGTCGCTCACGGCCGACCACAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 4 484968-484266 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000002.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 484967 29 100.0 32 ............................. GACACCCTGACCCTGGCGCCAGGGCTGTCTAC 484906 29 100.0 32 ............................. GCCGCGTCGATCTCCTCGTCGTCCGGTCCGTG 484845 29 100.0 32 ............................. GTGATGTTGTACGGCGCATGGGGCGACTTCTT 484784 29 100.0 32 ............................. AGCTTCTTCGGACTCGGCTCCACCCACGACAT 484723 29 100.0 32 ............................. GACCTGCGCCAGCAGCACGCCGACACCGGCCA 484662 29 100.0 32 ............................. AACTCAATGATGACCTGGCCAGCACACTCATC 484601 29 100.0 33 ............................. CCTGCTATCACCGGCAGTAGCCGACCCCGCTCT 484539 29 100.0 32 ............................. GCGTCCTGAGGACAGGTCCTCTTGCAGCGCGC 484478 29 100.0 33 ............................. GCCCTGGCAGGAGACGGGCCGGCCCGGCCGATC 484416 29 100.0 32 ............................. CGCGAGGCGACGCCGATCATCGACAGCCTGCA 484355 29 100.0 32 ............................. CGTGGGATGGCGGCTCAACGAGTTCGTGTTCT 484294 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : ACCCCAGGCCATGTCGCCGTCGAACTGGCCGTCCAGGGAGAAATGGCACTGATCACCGGCGACTGCGTCCACCACCCGATCCAGCTCGCCCATCCCGGCATCGGGGCCTGCGTCGACATCGATCCTCGGCGCTCCGAGGCCACCCGCCGTGCGCTGCTCGCATCCCTGGCCGCTACCGACACCCTGCTGCTCGGAACCCACTTCGCCCCGCCCACCGCCGGTCGGGTCGTCACCGACGGGGACGCCTACCGGTTGCTACCGGTGCCGGCGGACTGAACGGGGGCTTCAGGGCTCTGGAAGGGTGGGGAGAGAGGGCTTTGGTGTGGTCCGAAAGCTGGGGAGGGCCGTTGTTCCGGGTCGGTCCGGCTTTCGTGAGAGCATGCGGTGAGATGGAAGCGGTGCCGGGGTGTCGGTGGGTGGGACGGTCGAGGTCGGCTGTTCCTTAACCAGCCAGTAGGTCTCATGGAGATAACGCGCCGCGTTGTCGCAGGTCATTAAGC # Right flank : AAGCCGCACCGACCGCGTCCGGCCCAGCCCGGCCCTTACCCGGCGTCGCGTGCCGAATCGGTGAGGTGGCGCCAGGTCCGTACGAGCTGGCTGAACTCCTTGACCTGCACGAGCACGTGGTCGCGGGCGGCGTTCTCCGCGGCCTCGGCGTCCCCGGCGATGATGGCGTCGGCGATCGCGCGATGCTCGGCCAGGGAGCGTCGCATGCGGTCCGGCACCCGGAGCTGGAGCCGCCGATACGGCTGGAGGGCCCGTTTGAGCGCGTGGGCCTGCTGTCGCAGGTATTCGTTGCCGCACGCCCCTGAGATGACGCCGTGGAAATCGGCGTTGGCGTAGTAGTACCCGTCGGCGTCGCCCGCCGTGGCGTACCGCTCGCACGCGCGCAGGGTGTCCTCGAGCCGCTCTATCGACTCCCGCTCGATGCGGCGTGCGCAGAGCCGTGCCGCCATCCCTTCGAGCTCGGCCATGACCTCGAAGCGTTCGGCCAGCTCTGAGACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 5 489459-488698 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000002.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 489458 29 100.0 32 ............................. GAACGCCTCGGAGATTTCCGAACCCGGGACGT 489397 29 100.0 32 ............................. CACACCCTCGTCGTCACCGCCGCGATCGACGA 489336 29 100.0 32 ............................. TCTCCCGTCGCGCATCGCGGTGTTGTTGCGCC 489275 29 100.0 32 ............................. CTTCTCGGAGCCGCCCGCGGCCTCACGGAGCA 489214 29 100.0 32 ............................. ACAAAAAGTCGGCTTGGTGACTCTTCACCGAG 489153 29 100.0 32 ............................. CTCAAGGGGGAGTCGCACCTTTTCTTCGGTGG 489092 29 100.0 33 ............................. GCCGCCAGCGGCCTCCGGCATGGGAGCGTCTGG 489030 29 100.0 32 ............................. GCACTTTTAGTGGGCATGGTTTCGTCCGTGAC 488969 29 100.0 31 ............................. AGGACATCTTGTAGATCTGTCTTTGTTTCGA 488909 29 100.0 32 ............................. ATCGAGAGCGGTGAGCTAGAACCAGGGGACTC 488848 29 100.0 32 ............................. AAACCCTGGACGCGCTGATCTGCGAGGTGAAC 488787 29 100.0 32 ............................. TACCCAGGTATCTCCGATATCCGCGCGTCGGC 488726 29 86.2 0 ........................CCGG. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.9 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GGTTCCCCGGTGAGGTCGGCGAGGGCGTCCAGGTCGTGGAAGCGCGCTCCCATGGGAGTGGACAGGACCGCGACGTGCCGGCCCTGGTTCTGGAGGAGTTCCACGAGACCGTTCACCGGCTCGTGGTCGCTGGTGGACGCTCCGGACAGGAGCAGGTACAGGGGGCGCTGATCAGTCATGGGACCAGTTTCGGGGGTCCCGGTCGCATCCTCGACATCAGCCCCTGCAACGGCTCAGGGCCCGACTGCAGGAAGCGATCTTGAAGCACTTCGAGGAGTACCTGGGGGTGGGTGGGTCTTGGGGGCTCGGTTCGTGAGGAGGGGAACGGGAGTGTAGGCGGGGCGCTCGTGGCTGTGAGGGGCTCAGGTATTCGTGAGAGCATGTCGGGAAGTGGAAGCGGTGCTGGGCACTGCCGGTGAAGGATGGTCGAGGTCGGCTGGTTCTTAACCGGCGAGTAGGTATCGCGAAGATAACGCTCCGCGTTGTTGCAGGTCATTAAG # Right flank : GCTGTCCTCAACAGGAGGTCCCCCGGTCAGCGGGCGCTCTCTTCATGGGCGTCGAGAAGGTCGGCCACGAGTCGGCGGGCGTACGCGGTCTCGAGACCGGCGGGGCGAAAGAGGATGCGGTACATGATGGGGGCGACGATGCCGTCCATGGTCTCTTCGACGGCGGGGGTGTTCTCCCCACGACCGCTCGCGCGGATGAGGATGGTATCGATCTGTTCGGCCGCGTAGGCGGAGCACCGCCCGGCGTTACCGCCGTCCGGGTCGCCGAGTAGAGCGTCCCGAATGTAGGCCCGGCCCGAACCGGATCCCATCTCGTCGAGGAACTGTTCGGCCCAGGCGGTGAGGTCGGCTCGCAGGTCGCCGTGGTCTTCCGGTTCACCCTCGGGGCGCAGACGTTCCACCGCGACGTCCGACAACAGCTCGGTCAGGTCACCCCAACGACGGTAGATCGTCGACGGGGTGACCTCGGCGCGTTGGGCGACCATGGGCACGGTGAGGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 2174-1850 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000019.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================ ================== 2173 30 96.7 31 ........A..................... CGGGACATGAAAAAGGGCCGGGAGATCCTAC 2112 30 96.7 32 .............................C GCCGCCAACGCCACGAGGTCGACCGCAAGGCA 2050 30 100.0 31 .............................. GAAGTCAACTGCGGATGCTCCCCCTATGGGG 1989 30 93.3 80 ..............C..............A TCAACCACCTGAGCAGGGAGACGACCGTCTTCTGCTCCCCGCACACCCCACACCGTGCGGATCACTCGGCGCCCGTCCAG 1879 30 76.7 0 ............TGG........A.CT..A | ========== ====== ====== ====== ============================== ================================================================================ ================== 5 30 92.7 44 CTGCTCCCCGCGCATGCGGGGATGGACCCG # Left flank : TCACGGCTTCGACTCGACCGAGCGGGAGAACGAGGCCATCCGAGTTTCAGCGGATTGGCTCGAAACTCGGGCTAAGCGGTTCTGATGGCGTTGAAGAGCTTGTACGGGCCTGTAGAGGTGGCTGAGGGCTGCCTCATCGGTGAGCAGTGCACGATCGGGGTGCCCAAGGAGTCTCGCCTACCTGGAGGTCGAGGCCGGCAGCCGGGCGGAGGTGGTGCGTGTGGCCGCGTTGCTCGGTTTCGATGAGGCGTCTCTGACCGGTGAGAACACCACGAAGGTCTACGCCCGCTACGGCATCGATCTGGCAGCGATTATGGACCTGCGCTTCGGTTCCTGAGGAGAGCGGGTGCGTTGTTCGAGGCGGCGGATGCTTGAGCGGAGTGTCTACGCTGATCGGTGAGGGACTCTCGCAGAGGTATCGAGGGGTGTCGGTTTTGTCTGTTTCTCGACAACTTGCAGAAATGGTGGGTTGGGCGGGATAGCGTTGCAGGTCAGGAAGA # Right flank : CGAGGTCGCCGCACTGCTAATGCGGTTGGGGCCGTTCTCCGCATGTGGGGGGATGGGTGGGCGCGGGTCTGTTGGGGGTGCTCTTGGCCCCGCGGCCGAGGCCGGTCACGTGGTTCATGGTGACCGGCCTCGGGGCTCGACGGCTACAAGCAGTGGCTTTGGTAGAGGCTCTGGCCGTCGCCTGAGGGGCTCAGCCCGTGTGGACCGCGCTGAGCAGGGCGTTCCATTCGCGAGCGGGCAGGGTGAGTTCGCTCAGGTCGCGGTTCTGGGTGTCACGGATGTGGGTGGTGGCGCCTTCGGCCACCTCGACACAGCTTCCGTTGGCCGCGCTGTAGCTGCTCTTGTGCCAGGTTCGTCGCGCGTTGCTCATGGTTCACTCGTTCCCTTCGGGGCTGGGGGAGTTCCGGTTCGGGGAGTCAGTGGGTGCGGAGTGTGTTGAGGAGGGCGTTCCATTCTCCGCAGGGGAGGTGGAGTTCGGCGAGCTCGCGGTATTGGGTGTC # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:-1.06, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4416-3479 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000019.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4415 29 100.0 32 ............................. AAGTCGACGCCGACCACCGACGTGGTGGCCGA 4354 29 100.0 32 ............................. ATCCACGCGGACCGGTTCGAGCTGTTCGACAC 4293 29 100.0 32 ............................. TCCTGCGCGATGACCGCATCGAGGTGCACAAC 4232 29 100.0 32 ............................. CTCACCTGAGCCCGAAGCACAGATCGAACCTC 4171 29 100.0 32 ............................. AAGGTAAGCCGGAAAGGGGCAACGGGCAGGTT 4110 29 100.0 32 ............................. GATCGGCCCGAAGCCCGGTGACCCGCTTGGCG 4049 29 100.0 32 ............................. GAAGGAGACCCCTGTGAAGCACAGCGCCACGC 3988 29 100.0 32 ............................. TGATCTCCCGCTTGCAGGTTCCCTTGGTCGAT 3927 29 100.0 32 ............................. CTGCACGCCCTCCGCCAACACGAGAGCACCAC 3866 29 100.0 32 ............................. GAGGCTCGCACCCAGATGTTGATGATCAAGCG 3805 29 100.0 32 ............................. TGGTCGACGCGATGAACACCGCCCTCATGGCT 3744 29 96.6 32 ........................G.... GCGCGTGCCTGCTCTTCGCCGACCGACCAGTG 3683 29 93.1 26 ...............A........G.... CAAAGACACACCTGCACCTACACCTG 3628 29 93.1 32 ........T...............G.... GTCTCCAGCGTCCGCATGTAGTTCCCCGCCGT 3567 29 96.6 31 ........................G.... CCGGCTGCCAGAAGGGCGGCGATTCCGGCGA 3507 29 89.7 0 .....T..................GA... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.1 32 CTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : CAGGAGACGCGTTGGGACCGGTTCGCCGCCGATGAAGAGCGCGAGCTTTTGGCCGGGGACACGATGACCTACACCGACATCCACGAGAACAACGTCCTGGTCGAGGGGGAGCGGACCTGGCTTTTGGATTGGGCCTGGCCCACGCTGGGGGCTTCGGTGATCACGCCATCGTGTCTGGCCGTGCAGCTCATCGCGTCCGGGCATACGCCGGATTCGGCGTTGGGGTGGGTGTCCGGGCTGGAAGGGTGGAAGACCTCTTCGGAGGAGAGCGCCGTGGTGTTCGCGAGGGTGGATGTGCGTATGCATCGGTGGTCGGTCGAGGCTCGACCGGAGGAGGAGTGGTTGAAGGCGATGCTGGTGGCGGCCGAAGCGTGGGTGGAGCGTCTACGTTGATGGGTGAGGAACTCTCGCAGAGGGATTGAGGGGTGTCTGGTTTGTCTGTTTCTCGACAACTTGCAGAAATGATGGGTCGGTCGGGATAGCGTTGCAGGTCAGGAAGA # Right flank : GCCAGCGGCGACCCCAACTCAGGCCACGAGATCCGAGAACATTCGAAAGCAGTGTCCATACCCCCAGAGTGGGCCTTCCCGGCGCCACGACTTAGGAACTTCAGCGCATGCGTACCCTCGACGTGGTCAGCACCGATGGCGTTTTTCTCGACGCGGTTCTCCATCCCGCGAAGGCCGATCCGGTCGGGACCGTTGTTCAGGCCCACGGGATCACCGTCGACAAGGACGAGGGCGGCATGTTCGTCCGCCTGGCCGAGGCCCTGTCCGGCAGGGGGTTCGATGTCATCCGGTTCTCCTACCGCGGTCACGGCAAGAGCGGTGGCACGCCCCCGGGGGTGACCGTCACCGGTGAGATCATCGATCTTCAGTCGGTCATCGAGCTGGCCCTGGAACGGCGGTCCGAGCCGCTCTCCGTCGTGGCCGCGAGTTTAGGGGCCGTCTCCTCCTCGCTCCTGCTGCCGGTACTCGGCGACCGCATCGATTCCCTCGTTCTATGGAAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 5722-5509 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000019.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5721 30 100.0 31 .............................. TGAAGATCTCTCTTTCGGGCTAGGGGCTACA 5660 30 93.3 31 .....T.......................C GCGGGCTGTGCGCCTGGACGAGCTCGGCGTC 5599 30 100.0 31 .............................. TGCGCGGCCTCGACCGGCTCCGCTACATCGT 5538 30 73.3 0 T........A.AT...T........G..TG | ========== ====== ====== ====== ============================== =============================== ================== 4 30 91.7 31 CTGCTCCCCGCGCACGCGGGGATGGACCCA # Left flank : TCGACACCCGCTGGGACCGGTTCGCCACCCAGGAGGAGATCTCGGCTCTGCGGGGGGATTCTCTGACCCACGCCGACATGCACGGCCGCAACATCCTTCTCGATGCCCAGGGCCGGGGGTGGGTGGTGGATTGGGATTGGCCGACTCGGGCCTGTGCCGCGCTGATGCCGACCATGCTCGGTGTGCAGTTGGTGTCGGCGGGACACATGCCCGAGTCGGCGCTGGAGTGGGTGTCGAGTCTGAAGGTGTGGGAGGCGGCGTCGGAGCAGGAAAGGCAGGTGTGCGCATTGGTGAATGCTCGGATGTATGAGGAGTTCGCCCGCTTGCGGCCCGAGGAGGGGTGGTTGGGGGCGTTGTCCAAGGCGGCGGATGCTTGGGCCGAGTGTCTACGCTGATTGGTAAGGGACTCTCGTAGAGATCGAGGGGTGTCTGGTTTGTCTGTTTCTCGACAACTTGCAGAAATGGTGGGTCGGGCGGGATAGCGTTGCAGGTCAGGAAGA # Right flank : GGGCCAGGTCTCCTGGAAAGTGGCATGACTGCCGAGCCCCGCGCACGCGGGGGTGACCCCTTTTCCCGACCGCCCGAACGGGTGGTTCGACTCATGCCTCCGCGCACGCGTGGGTGGGTTCTCTCCGTGCCGGTGGCTCTTGTTCTCTTGACGCGCCTGGGAGAGGCCGCGGGTCACGTGACTGAAGACGGACAGTACGTGAGGACAGCATGACTTCGATTCCGTTCAATGAGCTCATCCACCCCTACACCGGGGATGCCCTGGAACTTCGCCCAGTAGAGAAGGGCCATGGTTGGAGTACCACGGCCATCGTCGTGGGGGAGAAGGGGGAGTTCTTCGTCAAGGGTGTGCCGAACCGTCCGGGAGGGCGGCTCGACTCGGCCCGGCGAGAGGCCGCCATCAACCCGACCGTTCAGGGCATCTCGCCGACGATGCGCTGGCAGGCCGAGGACGAGAAGTGGTTCGTGATGGGTTTCGACCTGGTCCAGGGTCGGGCGGCC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 10128-9478 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000019.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 10127 29 100.0 44 ............................. CCGTCCCCGAACCCACTCCTCGGGCCGTGGCCGAGGCCGCGGCA 10054 29 100.0 32 ............................. ATCTTGGCCGGGTGGGCCCTACCACCGAGCTG 9993 29 100.0 32 ............................. GCGGGCTCGTCCAGGTGGTCATCACCACCTAC 9932 29 100.0 32 ............................. GCCGAGGCCATCGTGCGCTTGGACGGGGTGGA 9871 29 100.0 32 ............................. AGGTTGCCGCGGATCACCCGGTTGCCACCGAA 9810 29 100.0 32 ............................. GCCGAGCGCGACACCACCGCCCGTGAGCGCAT 9749 29 100.0 32 ............................. CAGCGGCTCTTCGGCAGGGTCGCGCTCGCGGC 9688 29 100.0 32 ............................. CGTCCCATGCCCTGAAGCCCATGCTTCAGGGG 9627 29 89.7 31 ................T..........GG CGCAGAAGGCGTACAACAACATCCGGTCGGC G [9601] 9566 29 79.3 31 ...AG....A......T..........AG GTCACACGCTGTACGCGCTCGACGGCGCCGA G [9540] 9505 28 72.4 0 ...AG........CT.T......-..GT. | ========== ====== ====== ====== ============================= ============================================ ================== 11 29 94.7 33 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : GCGATCTATACGGCCTCCCATAACAACGTGATGATCAGGCTTCTGGACGACCTGTGGGACAAGACCGACCGGTACCGGCGGATCGGCCTGGAACTGCCCGCGGGCGCCGAGCCGCGCACCATCGACCAGAACCAGCACCACGAGATCCTGGAGCTCGTCGTCAGCGGTGATGGTGCCGCCGCGGCCGCGCTGGTGCGCTCCCACATCCTCAACAGTCTCGGCGCCGCGGTCACGAACGCTCTCGAAGGAAGGGAAGACGTCGCCTACCACCCTTTCTTCGGGTATTCGGTCTGAGGCGGCACGGAGTGGTGGCGCCACACCGACCTGAGTACTGCGCGCGCGAGGATGGGCTTCAAGACTTCGCCTCTGCTTCTCGCAAGGATGTCTAGGCTGAGGGAGTGGTGTTCGGGTGGATGGTTGAGGCGGTGTCGGTTTTGTCTGTTTCTCGACAACGTGCGGAAATGATGGGGCGGGCGGGATAGCGTTGCAGGTCAGAAAGA # Right flank : GATCTCGCTTTGTCCGAAGCAGTTGTAGAACCCGGTTGTCCCCACACGTAGGCGCGGATGCTCCTGGCCGGATCATTCGCCTTTCAGGCGATCACGGGCGCGTAGCACCAGGTCCAGGGCGGCTTTGCCGTTCACAGCGTCGCGGTCCATGGAGTCGAACACTCGACGGTAGGGCTCGACCGCGTCGTCGTCGGTCAGGTCCAGCTCCGCGCCGATGGTCTCCACGATCACACGTTCGTCGTCGTAGATCCAAAAGCCGTGCACGGGTGAGGCCGACAGGGCGGCCCCTAGAGGCACGATCCCGATACGTCCCCGCCCGGTGCGCACGCATTCGGCTAGGTGATCGAGTTGCTCCGCCTGGACTCGCCTACCGGCCTGTCGTGTGTACAGCGCAGGCTCCCACAACAGGATCCGTAGCCCCTGGCGCCGCACGTCCAGGATCGAACGCCGTTCCATGCGCTTGCGTACGCCGTCCTCGATATCGGTCGGCGTCCCGTAGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 14733-14398 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000019.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14732 29 100.0 32 ............................. AGCAAGCAACCGCATGAAAGCCCGTGACCAGA 14671 29 100.0 32 ............................. GCCTCGCCGCCGGAACCAAAACCCGCGCTACC 14610 29 100.0 32 ............................. TTTTCGACAAGGCCCGGGTTGCCGCCCGGGCC 14549 29 96.6 32 ............................T ATCTACGACGTAAAGCTCAAACACCCTTTTCC 14488 29 100.0 32 ............................. CGGGTCTGGCTACCCGGTGCGCACCCCCACCT 14427 29 86.2 0 ........T.......T........T..G | G [14402] ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : CGTTCCAGAGTGTTCGCGATACCGTCTTCGCTGTCCGTGCCGGTGGTGAAGGCGTCACGGATGTCGTCGAGGGCGATCCCGGCGTCGGCCATCTTGCGAATCCACAGCAGGCGGATCATGTCCTCGTACCCGTAGCGACGACGGTCATCGCCGCCCCGCTCAGGCTCGGGGAGCAGGCCGATCTCGTGGTAGTGGCGGATCGCTCGTGGCGTGGTGCCGGCGAAGGCCGCCGCGTCACCGATCTTGACCTGGCGGGGTGGTTTGAAGGACGAGTGCATGAGCGGGGGCCTTTCCTCAGGGGATCGGGACGTGAGTCCACTGGACCACATGCCGTTACGGAAGGTGCAACCTCGTACACACCGCCCCGTGCCGATTCCAGGCGCTCTAGGCTGGCGGGGGAGTGGCGTCGGGTGGGTGGTTGAGGGGTGTCGGTTTTGTCTGTTTCTCGACAACTTGCAAAAATGGCGGGTCGGCCGGGGTAGCGTTGCAGGTCAGGAAGA # Right flank : ACCTCCGAGGAGGTGAGGGGCCTCCACCGGATCACCCGGCGGGTGATCTCGGTGAAGGGCCGTTCCACCGGGTCCGGCCAACAAGAACCGGCCCGGATGAGCCGGTTACCGGAACCCGGCGGGAATCGTCATGAGGTCGATTCCCCACAACAGCGGCAGCAGGAACAGCGTCCCCACGACGATGAGGGCGAGGGCGAAGAGGTTCAGCCAGAACCCGGTCCTGACCATCTCCATGATCGTCACCCTGCCTGTGCCGAACATGATCGCGTTCGGAGGAGTGCCCACCGGAAGCATGAACGCGCAGTTCGCGGCCATCGCGCAGGGGACCATCAACGCGTACGGGTGGATGTTCAGGGAGAACGCGAGGGCCGCGATGACCGGAAGGATCATCGTCGCCGTCGCGGCGTTCGAGGTGATCTCCGTCAGGAACAGGACGAGCGCGGTGGCGAAGATGATGGTCAAAATGATGTTGACCCCGTCGAGCACGCGCAGCTGCTCAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 16252-15858 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZE01000019.1 Nocardiopsis alba strain TP-A0876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16251 29 100.0 31 ............................. CCTGCCCCCGGAGTCAGCTGACCGGGCCAGA 16191 29 100.0 32 ............................. CCCGACGAGTGGACCATCCGTGACCACACCCT 16130 29 100.0 32 ............................. GAAAAGGACACACATGGCTACCCAGGTCAACA 16069 29 100.0 32 ............................. TCACGAGGATGAGGATGAGACGCCTTCGGCTC 16008 29 100.0 32 ............................. CTGATCACCGCCCAGGCCTCTACCGAGCACGA 15947 29 96.6 32 ........................A.... TCGGAGGCACCCTGGTGGAACGCACATCTCAG 15886 29 93.1 0 ..........T.................T | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 CTGCTCCCCGCGCACGCGGGGATGGCCCC # Left flank : CCGGAGCTTGTCGTCCTTGGAACCGATGCCGCTGTGCAGGACGTCGAGGTCGACCACGTAGGGGGAAAGCGAGGAACTCATGGTGGGAGATTAGCGATCGCCTACGACAGACGGGTGGGCATGTTGTCCTGGCTTCGGTGATGCCTGTGGGTGCGGGTGTATCGGCGGGCGGGCGGTGGCTGTAGCTACGGTGGCGGGTTGTCCACAGGCTCGGAAGATCCCCCTTCTTCTTTGAAAGAGAGCGCCCTAGCCTGGAAAGGTGTTCGACTTTCTCAGCGTCTCCCACGGGCATGTGTCCTTCGACGTCGACGAGTTCTTCGCCTGTTCCCTGAACGACCTCAGATGATCTTCGCCTGCCGCTGCCTCCGAACAGGTGGGGGTGACTAGGTTGGTGGGGGAGTGGTGCTGGGGTGGATGGTTGAGGGGTGTCTGTTTTGTCTGTTTCTCGACAACTTGCAAAAATGGCGGGTTGGCCGGGATAGCGTTGCAGGTCAGGAAGA # Right flank : CAGACTTGTGCTCTAGGTAGCGGGTGAGTTTTGAGCGGATAGTTCTATGGCCAGTTCCATGCAGCGCCATTGGGCCGGGGAGGCGTCGTAGGGCATCTTGCCGATGGCTTCGAACGCGCTCATGGTGCCTGCCTCCCGCCTGCCGGAGCTGATGTCGGCCTCGTCGTCATCGGTGGGCTCAGGGTGCAACGCGTCCCAGGCGTCGAAGAGGGCATCGTCGTCCTCATCCAGACCGGATTCCTCGATGACGGTCTGTAGGGCGCTTTCAAAGGTGTGCCGCTCGACGGCCACTTGAGCCACCCGTGGATCATCGACGGCGACACTGTCATCGAGCGCCTCCTCGGCAACGTCGATGCGGTCGGAATCCTCCCGCAGAGCAGGATGCGTGGCCAGGACGATGAAACGGGTGGCCTGGACGGCCGCGCCGAGCGGGCCGAAGATCCGTTCAGTGACCAGCAGAGTGTCCAGGTCCGCCTGACGCAGGGAACCCTCGGGCAGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //