Array 1 116940-115752 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTPC01000001.1 Cronobacter sakazakii strain MOD1_LR635 LR635_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116939 29 100.0 32 ............................. GTAACAGACTTACCGGCTGGGAACAGCGACAG 116878 29 100.0 32 ............................. GCCAGTGTCGGAAATAACAACGATCTTGTCGT 116817 29 100.0 32 ............................. TTCTTTTCTCCTGCCGCTGTTGACCTGGTTCA 116756 29 100.0 32 ............................. AGGCTTGTAACCAAGCCTCTTTTTATTTGATT 116695 29 100.0 32 ............................. ACACGCTGATTAACGCCTGGCCTTTGTGGGAA 116634 29 100.0 32 ............................. ATGATGGATCGTTTAGTTATCGTGGTAACATC 116573 29 100.0 32 ............................. ATTATTTTTATGCCAGCAATACGGACTATGCG 116512 29 100.0 32 ............................. GCGACCCGACTGCGCTACTGGACGCGGCTTTT 116451 29 100.0 32 ............................. TCTCTTACATTTGACGTACTGGACGCTACCGA 116390 29 100.0 32 ............................. ACGTTGTCATGAACGGCGGGTTGTATCCGGCT 116329 29 100.0 32 ............................. CTCACACTGGTTGCATTCAACGCAACATAGGA 116268 29 100.0 32 ............................. TACAAGTGGCCGCTTCCACAAATTCGCGAACT 116207 29 100.0 32 ............................. CCAGTTTTCCCGTCGTGGTATTTGACCCGCCC 116146 29 100.0 32 ............................. ATGAACCCACCGGAAGTAGGAAAACTTTCGCT 116085 29 96.6 32 ............T................ TTCTTCGACAAAGGCGGCAAGAAGAAGATCGC 116024 29 93.1 32 A...........T................ TCTGCGAAAATTGCCCCATTCTTCGAAAAAAA 115963 29 96.6 32 ............T................ TGGTCGAAACCACGACTAACGGCGGTAAGACG 115902 29 100.0 32 ............................. GGACGCCTCAACGCTAAGTGCAGCTCTACCCC 115841 29 96.6 32 ............................C AGATCCTGAAGCGCTGTCTGCTGGGCATAAAC 115780 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.1 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGGGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACGAATAATGAATCCGGTTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATTCCGGTGGATTTGGACGGCCTGCGGCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTGGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGC # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTCGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAATGGATAATTCACTCAGGCGATTACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 143651-142953 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTPC01000001.1 Cronobacter sakazakii strain MOD1_LR635 LR635_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 143650 29 100.0 32 ............................. ATAACGAGAAAAAAACGGGTGAATCCTGAATG 143589 29 100.0 32 ............................. CTTTCATTAAGAAGGTATTTATTAATATGATC 143528 29 100.0 32 ............................. CTTCACCGTCGCGGGCATTAAACGGGCGGTTT 143467 29 100.0 32 ............................. CCATCATAATCATCCTTGCTTACTTTTGGCTC 143406 29 100.0 32 ............................. GAAGAATCGGAACTGGCAGCATCTTCAACAAC 143345 29 100.0 32 ............................. CGAGAATTTTTCCGCTGACTACATCCCTTGCG 143284 29 100.0 32 ............................. CGATTTAACCGCCAAGTCTCCCGGCTCCGGCT 143223 29 100.0 32 ............................. CATGCACCGGTAAACAGGTACCAACTTACTTC 143162 29 100.0 32 ............................. ATTTGTTGAAAGAATTATGCGAAGCAATCCGA 143101 28 96.6 32 ...........-................. CGGGAGTGATAACAGGTGAGGGCGAGGCGATA 143041 29 96.6 32 T............................ AACGCTGACCTGGCGAACACGCTGCAAAATCT 142980 28 75.9 0 .C.......-...C.T.C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGTTGACTGTAACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTTAGTACAAAGGGTTACTTTTAGT # Right flank : CCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTTTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 174253-174050 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTPC01000002.1 Cronobacter sakazakii strain MOD1_LR635 LR635_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 174252 29 96.6 28 ....A........................ ATTCACATCAAACCCTTCACGTTATGTC 174195 29 100.0 28 ............................. ATTCACATCAAATCCATCGCGTTATGTG 174138 29 100.0 31 ............................. ACACACGTCAAAATACCAGTCGCGCCTGTTC 174078 29 96.6 0 ................A............ | ========== ====== ====== ====== ============================= =============================== ================== 4 29 98.3 29 GTAGGGTGGGTAAGCGGAGCGCACCCACC # Left flank : CACCATCAAAGGCTCGGTGGATCGCGCCGAGATGCATTACATCATCCGCGATTTCGACCGCGAGAATTTCGAAGCGCGCAAACGCCGTATGATGGATATCGCGAAACAGGTCGGTAAGGGGCTGCACCCGGATTGTTATATTGAGCTGGCCATCGAGGACAGCTATTACAATATGAGCGAGAAGGTGGCGGAGCATCCGCATATCATCGAGATTGCGCGTCAGGCGATTGTCGATTGCGGCATGGAACCGCAGTTAAAGCCGATTCGCGGCGGCACCGACGGTGCGCAGCTGTCGTTTATGGGGCTGCCGTGCCCGAACATTTTCACCGGCGGGTACAATTATCACGGCAAACATGAGTTTGCGACGCTGGAAGGAATGGAAAAAGCGGTGCAGGTGATTGTGCGTATCGCCGAATTGACGGCGCAGCGGGAGGCGTAAAGGCGTAAAAAAGGCGGGTGCGCTGACGCTTACCCGCCCTACAAATTCAGGGATCATTTAT # Right flank : GCGATACCCGCGATAACCGACGCCTTACTCCGCAAAATACCAGTACCCGCTGTTTACCAGCGCGGCCAGCATTGCCAGGAATGACGGATCTTCCAGCGCGTCGCCAAACATCGCCTCATTCAGCACCACTTCATTGGCCAGTTGATGCAGCGCCGGGCGGTGCGGCGTATCTATCTTCTCGCCGTTCACAAAGACGTCCTCGCCGATACGCAATACGCGCAAACCGCCGAGACGTACCAGCGTATCACCCTGTTTCAGCGCATCGTAAATTTCATCCGGCTGGTACGGCGGCTCCGGCGGCGACACATCCAGCTCGTGACGCGACTGGGTGATAAACTCACCAAACCATTCGTTGAAATTATCCGGGTCGCGGATGAGATCCAGCATCATGTCGCGCAGCTTTTCGACTTCCGCAGGCACAATGTCTGCCGGACATTCGCGTGCGGGCACATCCGGATCGCTGTAGCGATGGCTGCCGAGCTCACGCTGCAACACATAAT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGGTGGGTAAGCGGAGCGCACCCACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 449781-450349 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTPC01000003.1 Cronobacter sakazakii strain MOD1_LR635 LR635_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 449781 28 100.0 32 ............................ TAGCATGAGTGAAAAATGTACGCCGCCTGTTC 449841 28 100.0 32 ............................ TTGGCGTATCCTGACCCATACTTACCCTTACC 449901 28 100.0 32 ............................ AACGCCCACGGTTACAATTACGTGTTCACGGG 449961 28 100.0 32 ............................ GACAACGCCGCCCGCGCCGACGCGCGCCTCGG 450021 28 100.0 32 ............................ TGTCTCAACTGGTCGATAACCACAAAGCAGGG 450081 28 100.0 32 ............................ TCTCGCCAGGCGTTTGCGACGTCACCGCCAAG 450141 28 100.0 32 ............................ AACTGCTCGCACTGCTTCGTCTTTTCGCGCAG 450201 28 100.0 32 ............................ GGTCGCTATCACGCCTGTAAAGGCCCGCACGC 450261 28 100.0 33 ............................ GCCGAAACTTTTAGCGGCCTTGCGGGCAACTGA 450322 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATGCGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGACGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAACAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : AACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAGTAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCACGGTAAAATTATCCATAAAATTTATGGTTTCTGCTGTACGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGAGCTAATTAGCTCATATAACGGCGATGACACGTAAGAACCACATTAACTACAGACATTTGCAGGTTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAGTTGACATTTAGTGTCATTCATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 459060-461728 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTPC01000003.1 Cronobacter sakazakii strain MOD1_LR635 LR635_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 459060 28 100.0 32 ............................ AAAATGACGCTGGCGGCGCTCGACGCCACATT 459120 28 100.0 32 ............................ GCACCCGGCCCGCGACTTGTTGCGAACGTCTT 459180 28 100.0 32 ............................ AACGAGTGACGACGCCTGCGACGCAGGCAGCA 459240 28 100.0 32 ............................ GCGCAGCCGACCGGCCCGCACCACGACCCGGC 459300 28 100.0 32 ............................ CCAAGGTACGCTAATTGGCTCTTGCGCTGCCG 459360 28 100.0 32 ............................ CGGGCGCGCGGTGCTTTGATGTGCTTGGATCT 459420 28 100.0 32 ............................ TCTGCTTTCAGGGTGTGGGAAATATCGCCGCT 459480 28 100.0 32 ............................ CTGAATCGCGATGGTGTCCAGACAGGCACTTT 459540 28 100.0 32 ............................ AGGCGCGAGCGCGCCAGAACGTGCTGGAAACT 459600 28 100.0 33 ............................ GCCAGGATATCGGGCTAACCGTCGCTATCAAAT 459661 28 100.0 32 ............................ GTACTGAACGAAACAGGCGACGCACCCCAACC 459721 28 100.0 32 ............................ TATCTGCGCCGCATGAAACCCACTGACAAAGC 459781 28 100.0 32 ............................ AGCACCTGCCCGAGTGGTGCGTTTACGTTGAA 459841 28 100.0 32 ............................ ACTATACAGCCAGTGGTACGACTGGCAGCGGT 459901 28 100.0 32 ............................ TGCTGGTGTACCAGATGTGGCGCAGGCGCTAC 459961 28 100.0 32 ............................ ATCCCGAAAACATCCCAAAAGTTGCCGCTGTT 460021 28 100.0 33 ............................ CTGGGTGTGGGTAATCGAATTCCGTCGCGTTGG 460082 28 100.0 32 ............................ TGTGCGAGTGGGATAAGGATGACGAGTCTTTC 460142 28 100.0 32 ............................ CCACACGCACAGCAGATATTTCACCCACGCGC 460202 28 100.0 32 ............................ CGGGAAAAATTTTTCAGAGAGTTCGTCGAGGT 460262 28 100.0 32 ............................ TTGACGCGCTCGCGACCTATTCCAGCGCGCTA 460322 28 100.0 32 ............................ ATGGCGAAATTTACAGACGCACACGACCTGTT 460382 28 100.0 32 ............................ TGGCCGCGCACCCGCCCTTCGTCGTCGAGTAT 460442 28 100.0 32 ............................ AAATACCGGCTTAACGCTGTGTGGGATATCTT 460502 28 100.0 32 ............................ TCGGCGGGTTTTTTATCGTCTTTAGTCAAACA 460562 28 100.0 32 ............................ ATTTGGCCCCATCCTTTGCGAATCTGCTCATC 460622 28 100.0 32 ............................ TCGGGTTTGGCTCCAGCCTGGTTAACAAAGGA 460682 28 100.0 32 ............................ ATCACCCCGACATCGCGTGATCGCGATCACAC 460742 28 100.0 32 ............................ GATCAGCGTGAACTATCGCGGCTCGGCGGCAG 460802 28 100.0 32 ............................ GATTCGCGTAGCGCGTCGATACGCGCGCAGTG 460862 28 100.0 32 ............................ ACACTCCACGGCCCCAAGTGTAGCGAAACAGA 460922 28 100.0 32 ............................ AGAAGGCACGCTGTGAGAAAAATTCCGGCGCA 460982 28 100.0 32 ............................ ATGTGTTGATGACCTGCATGGTGTTGGAATGG 461042 28 100.0 32 ............................ CACCCGGCGAACGGCAGGAAACACCAGGCGGG 461102 28 100.0 32 ............................ AGAGGTTAGCCGCCTCTAACGTTTTGTTTATC 461162 28 100.0 32 ............................ GCTATACGCGTGCCGCCACTCCGTCTCACTCC 461222 28 100.0 32 ............................ AGATACGCCGGGCGCAGACCCTCTGTGCCCGT 461282 28 96.4 32 ..A......................... GTGGGATAACGTAACCGACGGCGTGAAAATTC 461342 28 100.0 32 ............................ TGCGCGTATACGGGCGAACGGCCGGCGCCACG 461402 28 100.0 32 ............................ AGCGCGCCGAGCGCCGAAAATATGCAGGCGAA 461462 28 100.0 32 ............................ GGTGAAATCGCTGGCATCCGCATCGAGTGAGC 461522 28 100.0 32 ............................ GCCAGATGACGGCGTCCAGGTGAACAAATCCT 461582 28 100.0 32 ............................ CGTGGGTGTGGGTAATCGAATTCCGTCGCATG 461642 28 100.0 32 ............................ ATCCACGCGGACTGAGAGCCGACTGCATTGCT 461702 27 89.3 0 .....................-CG.... | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCACTGGCAGAATTAGAGGCCACGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCCTGCCACAGGTTCAGGGCTGGCGCACCGTGACGCGCGTACAGGTGAAAAGTAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGGTGGCTGACTGAAGAAGAGGCGCAGCAGCGGCTTTCTGGTTTACAGGTGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCGGTCAGCGGTACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTAGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTTAAGAGGTAAGCAGCATTTATGTTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : AATCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACACCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCAGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //