Array 1 5404-4699 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEST01000236.1 Streptomyces sp. PT12 NODE_10_length_179031_cov_323.441_ID_11538768, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 5403 29 100.0 32 ............................. GGCACCGGGTCGGTGGTGACCGGCAGCACGGC 5342 29 100.0 32 ............................. ACCACCAGGAGCACACCGTGACCCCGACCCGC 5281 29 100.0 32 ............................. AACCCGGTGCAGGTGGCCCGGTGAACGCCCGA 5220 29 100.0 32 ............................. CTACTCTTCACCGCGTCACCTGCCCTCTCCAG 5159 29 100.0 32 ............................. CGGTCCCACGCCACTGGCTCAATCGACGTCGC 5098 29 100.0 32 ............................. TCTCTCGGCGCCCTCACGTCGCTCGCCCCGGG 5037 29 100.0 32 ............................. TCCGCCCAGCCGCGGGCCTCTCGGCGTCCCCG 4976 29 100.0 32 ............................. CGTGCACTGGCTGACACAGGCATCGGTTTGGC 4915 29 100.0 32 ............................. GGCAGCCCGCCGGCGGCCGACCGCATCGAAGA 4854 29 100.0 37 ............................. GTTTCTGTTCATCCTCTTCGGCCCGGCCCGGCCCTGC 4788 29 100.0 32 ............................. CCCTCCCGGGCTGGTCAGAGGCGCTGACGGTG 4727 29 72.4 0 .....................GCACGAGG | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 97.7 33 CCGCTCCCCGCACCCGCGGGGTTGTTCCC # Left flank : CATCTCGAAGCCGGGCGCAACCACGCGGAAGACGAGATCATCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCCGGGCTCCGCGGCTTCCTCACCCGCTGGCTTCTCGAGATCTCCCCCGGCGTCTTCGTCGGTGCCCCCACAGCCCGCGTCCGAGACCTCCTGTGGGACGAGGTCCGCACCTATGTCGGCCAAGGCAGGGCACTCCTCGCCCACCAGGCCGACAACGAACAGGGCTACACCTTCAGAACCCACGATCATGGCTGGCACCCCTTGGACCACGAGGGCTTGACCTTGATCCACCGCCCCACTCGAAGAGACCGTCCCCTCACCGGCAACGAGCCACCGACATCAGGCTGGAGCAAGGCAGCCAAACGCAGAAGGTTCGGCGGCAAGTGAATCGGCCGGCCGATACGGAGGGAAAGGCCCGCCATGACCGTTTCCCCGGAAGTAAGTAAAAACGGCCTCCACATGAAATAAACCCGCAGGTCAGCCCCT # Right flank : CGACTGAGCACCAGAAAGCTCGTCTGTTCAAGGGGAGGTCGGTGGAGCTGGTGGCGATCTGTGTGAGGGGCCGAGGGCTTCGACGAGTCGGCCTCAGGTGGTCGGCGCCCAGGCGGTGGTCGAGAGCCTGCTGAGGTGGGCCGCGGCTGCCTTGGTGGCTGGTCCAGGTGTGGGGGTTGGGGCGGGGGAGGGTGAAGGCGCAGTCGTCGACCGTTTCGGTGCTGGCGATCAGGGCGGCCTGATAGCGGGGCACGAGCTCCCTGATCCGGTGGATGTAGTCGCGGGTCTCGGGGAACGGCGGCGGCCCGGCGAAGGTGCGCACGGCGGCGGGCCCGGCGTTGTAGGCGGCCAGGGCGTTGGTGACGGGGTCGCCCGGGATGTCGGCGAGGTCGTCGGCGCGGGTCCACAGACCGTCGCCAAACGGGCCGGACACACCGTCGCGGTCCTGCTCCGGGTCTACGCGAAGTTCATCGACGACAGCGACGACGCCACCAACGCCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCACCCGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16518-15840 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEST01000236.1 Streptomyces sp. PT12 NODE_10_length_179031_cov_323.441_ID_11538768, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================= ================== 16517 28 100.0 33 ............................ CTCCGCGCCGCCCCACGCCTGTTGGCCTGGGCT 16456 28 100.0 33 ............................ CGTTCCGGCGCGCGCTTCGCCCGCGGGTTCGGC 16395 28 100.0 33 ............................ CTGCGCCGCATCCGCCGCGGGTCCGGATGGTGC 16334 28 100.0 33 ............................ CGGCACCCGCCAGGACGACGCCGAGCTGGCCTC 16273 28 100.0 33 ............................ CACCGCGAACGCCAGGTGCCCCACGCCGTCGAC 16212 28 100.0 33 ............................ CAACTCGGCCGCCCGCACACGCCGCGCCTCGGC 16151 28 100.0 33 ............................ CGCGAGGTAGGCGTAGGCGGTGGCTTCGGCGTA 16090 28 100.0 33 ............................ CGCATCCCTCCCATATGCACGTTCCCATAAGAC 16029 28 100.0 33 ............................ CCAGGGGAGAGAAGACACGTGAAAACTCAAACA 15968 28 92.9 73 .....................G..C... GCGCGGTAGATTCTCTGCACCGTGTTCCTCGTCATTGCACGAGGCTGACCCCTGAGTCGACTGCGCCACATGG 15867 28 71.4 0 A..........G.CT......T.CCG.. | ========== ====== ====== ====== ============================ ========================================================================= ================== 11 28 96.8 37 CTGCTCCCCGCACGCGCGGGGCTGTTCC # Left flank : TTCGTCGGAACGAGAACGGCCCCCGGCTGCGTATCCGCAGATCAGAGGCCGTTTCACCAGGGTGGCGGCGCCAGGATTCGAACCTGGGAAGGCTGAGCCGGCAGATTTACAGTCTCCCCCGCACAAGCCCCTGACCAGGCGCGATGCGGCTTCTGGCGTCCGCCACCCCACAGATGTCCCACAAGACCACGGACGCCACTCCGCCCCTCACATCCGTCCCTCGCCGGGCACGAGGGTTGTCACCCAGAGCGCACATCAACGCACCGGAAGAAGGAGCGCTTCCGCAACAGGCACCGAACGACAGCGCGCACTTGATCACCTTCCCCCGGCACGACACGGGCCGCGCCCTCACCACATCGGGACTGCGCCAGTACGCAGCCGAGACCTCATGGTAGGTATGGAGAGCATCGCCTCCTCAAGGATGACCGCACGAAATGCCCGATTCTCGAGAAGCAAGCAAAACTCGCCCCCCGACGCCATAAAGCTCCAGTTCACGCCCT # Right flank : CTCCCTTACGGGCAAATGGGGCGAATTCTCTCTGGTCCACCGCTCAGCGCGGGCCGTGGCTCTCAATCCCGCCGTACTCATGCGCATCAGAGCGCTCTCGCGACACACCGCGCCTTCTCAGTCTTCGCGGATCAGCGAGCGGCGAGCGGCGCCAACCTGGCAAGGCGCCGGATCGCACCTCGTAGTTGGCCTCACTGGCAAGATTCGGCAACACAGCCAGGGGCGATGCGCGTGAGGGCGCTCCCCCGCCGCCGGGGCCGGGGGAGTCGAGCGTCCGCGAAGATCCAGAAGGCCAGCCAACTGCGTTGCGCTGCGCAACAGCCAGGCACCGCCAAGCATCGGGGAGCTCAGCCCACTCAGTTGCCGAACTGAGTCGAACTGTGCCACAAGTCCATTGCCCACCGAACCGTGTTGCTGCTGACCCGCGGGTCGGTCTATCTTTGTCCCGCGGATCACCGGCCACGCCACCGCGGCCGTGGTCTGCTCGCGGACGGCCCTGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGCTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCACACGCGGGGCTGTTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10241-9969 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEST01000072.1 Streptomyces sp. PT12 NODE_70_length_17216_cov_370.475_ID_492484, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10240 28 100.0 33 ............................ CCTGCCGCCGCAGCATCCGGTCGGGGTGGACCT 10179 28 100.0 33 ............................ CGAGGTACTCGGGGCAGCCGGAACGGCCGCGTC 10118 28 100.0 33 ............................ CTGCCACCGCGCTCGAGCGGCCAGATAGGACAG 10057 28 92.9 33 .............C.......A...... CGGTTGTAGCGCGCCTGGGGCAGGCTCAGTCCG 9996 28 75.0 0 .C.....T.....CG......A.CG... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 93.6 33 CTGCTCCCCGCACACGCGGGGTTGTTCC # Left flank : CGGCGTCGCTGTGACCATCGGATACGAACTCGCGAACCGGCGTGTCACCCTGCGCCTGGACGGACACCTCCTGCACGTGGTCCACGACGGCGTGCTCGCCAAGACGCTACCCGCGCCGATCGACGCCGACCAGCGTGCGGGTCTGCGCGGAGCCCGAGTCGTCACCGGAGAACTTCCTCCGCCCGCAGCCGGAGCGGTCCGCGTCGAGCGCAAGGTGCCTGCTGACGGCGTCATCATGGTCGCCCGCCAGCGGCTGCGAGTCGGCCGCACTTACGCCGGAGAACTCGTCACCGTCCACGTCGAGGACACGTACTTCCGCATCACGCTCAACGGCGCCGACCTGTCGCTCCACCCACGCAAGGACCAACACCCAGTCACCCGCTTCAGAGCGAAGATCCACGCCCCGAAGCTCTGACCCTGTCCAGCATCACCTGAGACCGTCAACGGTGTCATGAGGCCAAACTGTCAACAAAGTCCCGAGACCTCACATCCCGGGCGGG # Right flank : CATCACGCGATCGCGAGCGGCCCTCTGATCGATGGCGCCTCCGATACGCAGAGGCGACCGGCTCGCTGAGCCGGCCGCCCTGTGTCTACGAGTCCCTCGGGTCAGCCTGGAGAGCCACAGGCCGCTAGGCCTCCCACATCTCCCCTGGGGAGGACGTGTGCCTGTTGCGAACCCTCCTGGGTCGAGAATCACCGGGAACACCCCCGCTTGCGCGGGGAGAAGGTCTCCTGGCCTGGGGCTCTATCGGCGCTTTGCCATTTCGTTAGCGGCTGGGGGTGGCTGGGCGTGGCTGGGGGTAGTCCGCGTTGTCGGCTGCGTTGGGTGGGGTGTGGGCGTGGAGGAGGGTGGCCAGGGTCGCGATGCGGCGGAGGGAGGTGAGAACCGGTGGCGGGGGTGGGGTGGTGGCCAGGAGGGTCGTGACGGCGTGGTGGAGGGAGGTGGTCAGGGGGGAGTCGTGGATCACCTCGTCGTGGAGGAGTTGGCCGTTGTCGAGGCGGGTG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGTTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGTTGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 570-73 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEST01000202.1 Streptomyces sp. PT12 NODE_83_length_10363_cov_358.21_ID_11537000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 569 30 100.0 37 .............................. CCGGTGGCGGGGTCGCGGTCCTCACCCTCGTCGTGCT 502 30 100.0 35 .............................. CTGGAGCTGTAGGAGTGGGTCGGTTCCTTGACCTT 437 30 100.0 38 .............................. ACTCTTCGATCCGTTCCGAAAGGGGCATCGTGCCGAAA 369 30 100.0 37 .............................. TTGCGCCCCGCCGCGTCGCGCAGCGCTTCGGGCTCCC 302 30 100.0 36 .............................. TGGTTCAGGTCGATCGGCCAGGCGATCGTCTCCGGC 236 30 100.0 37 .............................. CCGTAGGGCCATGTGGGGGCCCACTCATCCACCGTGC 169 30 100.0 36 .............................. CCAGTCAGGGCGGCACCACCGCCTACCTGGGAGAGA 103 30 100.0 0 .............................. | G [79] ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 37 GTCCTCATCGCCCCCACCGGGGGTCTCAAC # Left flank : GCCCACCGTGCCCTCGGCCGACCCGTCGCATACGAGGAACTCATCTACCTCGACGCACTGGCCCTGACCCGCCACTGCCTCGAAGGGACCCCCTACAAGCCGTTCCGCATCTGGTGGTGACAGCACGTGCACGTCATCGTCGTCTACGACACCGCCACCCAACGCAACGCCAAAATCCTCCGCACCTGCCGCAAGTACCTCCACCGCGTCCAACGCAGCGTCTTCGAAGGTCAACTCACCGAAGCCCAACTCCGCCGCCTTCAAGCGATGGTCGAGAACGTCCTCGACCTCACCTACGACAATGTCCTCGTCTACACGTTCCCGCCCGGCACAAAGCCCCAGCGCCTCGAATGGGGAGCCACCGAGCCGCCCCCCACCGACGTCCTGTGACCCCGCATTTCAGCGCCACACCGACCTCACCAACACAACCGCAGGTCCACTGAAAAACCACGCCCACCCACCCCGCCGAGGCATCGCACGACGTGCATCTTCACACTGGG # Right flank : CTCACCACCCGGGACGACTGTCTGTAAGCACTTCTGTGGGCTCCACCGTGGCAACGTGAAGTGGCCCCACTGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCCACCGGGGGTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 10238-9278 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEST01000202.1 Streptomyces sp. PT12 NODE_83_length_10363_cov_358.21_ID_11537000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 10237 30 96.7 36 .........................G.... ACGGCACGTCGGGGATCATCACCCTCGCCGCGACGC 10171 30 100.0 37 .............................. GAGCTGGCGCCTCCGGAGCCGAGCACGGCCCACTCAC 10104 30 100.0 34 .............................. CCGCCGCTGGGCCTGGTCAGACGCGGGGCGCCGT 10040 30 100.0 36 .............................. GGGCAAGGACGCCGTCGACCACGTGGTGGCCATCCT 9974 30 100.0 38 .............................. GCCGGGTCGACATGGACGACGAACTGGCCCGCATGCTG 9906 30 100.0 38 .............................. TCCGGCCGGAAGGTCGGCCGCGTCATGGAGGAGATCGA 9838 30 100.0 37 .............................. TAGTAGGTCTCGGTGTCGTGGTTGTTGCCGGCGCCAT 9771 30 100.0 35 .............................. CCGATGACCGCGAGCGAGTAGCCGAAGCGAATCGG 9706 30 100.0 35 .............................. ACTCCAGACGAGGCTGAGGCCCTTGGCATCCCCGA 9641 30 100.0 37 .............................. TCGACCCCCGGGCGAAGTTGGCGGCCGCGCCGTTGGT 9574 30 100.0 36 .............................. GGCTGCCAGGCGCTGCTGAGGGCTCATCTTCACTAT 9508 30 100.0 37 .............................. ACCCGGCCGCGCTGGACACCCCCTGGCGGGACCTCAA 9441 30 100.0 37 .............................. TGATCGCCCTCGCCCGCCACCCGGCCAGCAGCTTCTC 9374 30 100.0 37 .............................. ATCTCGTCGGGAACGTCGATGCCGGCGGCGCCAGGCT 9307 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.8 36 GTTGCGAACCCCGGTGGGGACGATGAGGAC # Left flank : CCAACACCGGGGAATGACCAACATCAACTAACGCAGCGGGGTCACCTTTCACCCGTCGGAAGTGGGTCACGATTCACACGTCGCCGACAGACTGGACCGCCCTCGACTTGCCTGCGCCCGTGGTG # Right flank : CCCATTGTGAAGATGCAGGTCGACTGAGGTCTGGGCGGGGTGGGAGGTCTGGGGATTGCAGCGGGTCGGCGGTTGTGTTCGTGGGTGCGGTGAGTCGCTGAAATCGCGTGCCGTTCAGCCCTTCGATATCGTGGATGGTCAGGGCCCCTCGTAGGGGCGATGAGGTCGTGCCGTGGTGGAACCTCGGCAGCAAGTCGACTCGTTGCGACCCCTTGCGGCTGCCGCGAGACGCGTCCCCGCTGAGGGGCTATGACGTTCGCTGAGCATAGTGGGGGCAGCCCTGAACCGCTGTTGGTCGGAGTCTACTTGATTTGCTCCGCCGCCTTCAGGTGTGTACTTTCTGTCTCCAGCAGAAAGCCGTCAGTGGTCGGTAGCTCGCTTCGTCAATCTGACACGGGGCACTGACAACGGCTCCTGACCTGCATGTTTCGGTCGTTTGGAGAGGTAATGGGGAGGTGCGATGCATCGGTTGAGGGTTCACGTCCATACGAGTGCGCCGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCCGGTGGGGACGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //