Array 1 233394-233186 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFNW01000001.1 Zymomonas mobilis strain NRRL B-23394 Ga0314521_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 233393 28 100.0 33 ............................ CTGATCGGCAATATTCGACGGATCAACAGGCTG 233332 28 100.0 32 ............................ CGCCATAGAATTGCAGAATTTGTCGGACACAA 233272 28 100.0 32 ............................ TGAATACTGTCAAAGCTAACGGATTGAAATCA 233212 27 89.3 0 .....................A.C-... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AATAACGGATAACTAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCGAGCCGCCTAATCGACATCAGGAGAAATAGCCAATATATTTCTAGGGTATATTGGTTATTTTCTTCAAAAAGAAAAAACGCTATCAAAGACAACACTGCTTTTTGATATTGTAAAGAATACACCGCCTCAATTTTTGACCCTAATTTGACCCTCTTTTTTCGAGACATTTAAAAATCGTTTAAAATCAATAACTTAAAAGCAAGCCTATTTTTTAGGGTTATTTTGCCTATTTGGCCTAATATCCCTTTATTTTAGGGATAATTTTATAAATCTCTTCTA # Right flank : TTATCAAAACCGATGCCAATCATACCCTTAGATGCGACCTTCGAGACAAAAACATTTAAAAACAATTACTTAACCACAAAAACATTAAACCCTTAGAAAAATATTATACATTTTTTCAAAGATTTAGGTTGACGAAAGCCAAAAATCCGCGCATTTGCGCTTGAGGTGGCTCGATGGCGGAGTGGTTACGCAGAGGACTGCAAATCCTTGCACGCCGGTTCGATTCCGGCTCGGGCCTCCAGATTTCTTTTTACCGGCTGAGGGAAAACGATTTCACCCTGCCGATATCTCCTAAATTTATCCCCCGAATAAATACATCCTGCTATAATAGGACTGTTGTCAGCTACGCCCTCGACACAACCGTTTTATATCAAAACATCCTTTTCGCTTTATCTTCTCACTATCCCGATAACCCTCATATCCTCTCTTTTCATCGCTTCGATCGCCCTCTTTTGATATAGACGCGAAACCGCTATATTACGCCTTCGCAGACTGGCGAT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1343494-1343700 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFNW01000001.1 Zymomonas mobilis strain NRRL B-23394 Ga0314521_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1343494 28 100.0 32 ............................ ATAAATTGCAAGCTGATAGTGTTGAACAGATT 1343554 28 100.0 32 ............................ AGCATCGCGCCACAGAAGAAGATCAAGCGTGT 1343614 28 100.0 31 ............................ ACTGACAAACTGGAAATGCCGAACGCGACAA 1343673 28 75.0 0 .............G...T..T...AGGG | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGGCTGTATATTTTTGCAGCATAACCGGAATTGAGTTTAATTTTGGCCTGTTGCGGCATGGCGGCCTTTGTAAGCCATTTTCACCACGAATAATCAGCGATATCCTATTTTCTGACATTGGTAGATTGTCCTCATCCTTATAGCCGAGTTAAGGCATTTAGGTGGATGTGTTTAATTTTCAGCCTTAGCATAGCGAGGATAGAGAAGAATAAAGGCTATTCAATGCTGCACATCGCCGAAAATTGGTCGAGAGAATAACGGGGTGTATTAGCCTTGCGTATGGATTTTCTTATTAGCATGGCCTAAAGAATTGATGGCTTTTTGATATTGTGAAGACTCTTGCGGGATCAAATTTGACCCTTATTTTGACCCTCTTTTTTCGAGGGTATAAAAAATCCTTTTAATTCAATATGTTACCTATAGGCCTATTTTTTAGGGTTATTTTGCCTTTTTGGCGAGATATCCCTTTATTTTAGGGGTAATTCTATCTATTGCCTCTA # Right flank : GCTTTCACGTTATTTAGAAAATAAGATACACATCCTTACTCCAATAAAAAGAGCATAGGCTGAATGCCTCTATCGTCAATTTTAGGAAGTTCTTAGGAATGGTTTTCTTTATAGTCGTGGCAACAATTGTTATCGGCGGTCTGTTTTACTATTTAGAGCCTTCTTTGCAGCAACAGAAACAAAAGATCAAAGCGCATATAAGGAGGTTAATGAGGCCTAGCTATATGATCGCTGGATTCCTGTGTCTTTTAGCGGCTGTGATCACAGCTTTTGGCCTTGTTCACAGCCTTTCTTGGGGGCAAATGGGTAAGATATCTTTATTATCGGTTACAGGAATTTACTTTTTGCATATGGCCTATCGCCTCCCAAGATAGAGAGATTTATGCGTTGCCGGATAGGTGGGGGTAAAATTCAGGTGGTTTTAAAGAGGGCATGAAGCCCTCTTTTTTTAAGGTTTTTATTGAAAAAACGGTTTATTTTTTATTTAGGATTAGTCTTCT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1673411-1673921 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFNW01000001.1 Zymomonas mobilis strain NRRL B-23394 Ga0314521_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1673411 28 100.0 34 ............................ GGCTTACGAATTTTGGACAGGAGACCGGCGTAAT 1673473 28 100.0 32 ............................ TATCCAGTCAGCGACAATTCCAGCTGATTTAC 1673533 28 100.0 32 ............................ TGATAAAAAATGGTTCTTACCGAGTGACTCAC 1673593 28 100.0 33 ............................ ACAGCTTCTCGGCATGGTGCCGCAGAACGGGTC 1673654 28 96.4 33 ........T................... AGTCGATCAGACCAGCTCCGACATCAAGATGCA 1673715 28 100.0 32 ............................ AGCTGCCCGACAGCGAATGCCGATATATTTAT 1673775 28 100.0 32 ............................ GCATTTGTCTTTTCCAATTTTGCTATAGCTTG 1673835 28 100.0 32 ............................ TGATTGATCTGAAGGTATTGTCCGACTTTTAC 1673895 27 78.6 0 .............T...T..G..-.T.C | ========== ====== ====== ====== ============================ ================================== ================== 9 28 97.2 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCTGAACAGGTGGCTATCGCCTAATCGCTCAAATATATTGAGGTTTAAAAGAGGGGGTCCGAAAAAAGGCTCCCTTTTTTATTGAGGATTATTGACGAGAAGTAAGTTGTAAGCGGCCAATTTTAGGATTTTTTCTATTCTAAAGGTCGAGATTAAAAGGTCTATTCCTTTTGCAGATGAGACAGTTAGAATGAGGCCTTTATTGGTCAATCGGAATAATTATGATGGGTGGAATCTGGGGTAAATAAATAACCTCGTTTCATTCTTGCTATACTTTCCGATCGTTTCCTTTTGTAAAAGGAAAAAGAAGCGTTAAGATCACGATCTGTTTTTTGACATCGTGAAGTCTTTTTGACCCTGCATTTGACCCTCTTTTTTAGGCATGTAAAAAAATCCTGTAAAATCAATAGGTTAAAAATAGGCTCTATTTTTAGGGTTATTTGGCCATTTTTGCCCGATATGCCTTGCATTTAGGGGGATTTTTAATTATTTGCTCTA # Right flank : CTTAATTTATGTGTTGTTCTGTTTCATGGTTGGGGGGTGTTTTATCGGAGGCTATTCGGTTCTCAAAATATGTCGCCGGCACTTCTTTTTCTTCTCTGTCTTTTTTTTAGCTATTCCGACCAGAATAAAATCATCTGTAGTTTCAAAATAGCGGTTAAAAAGTAACGCTTGCTCCGTCATTTTGAGTTATTGGCGGAATCTGTTTTTCATTTCTTTTTATGGCTCTTATGAAAATAGAGAAATGTATTTTTCTTATTTTCTATTTTGTTAGAAAATTTTTCATTCATTTTATTGAAATGATATTTTAACCATAAGAAGCCTATGACCCATCGACCTCTTTCTGATCAAATTGCCCTTGTCACCGGTGCCAGTCGCGGGATTGGTGCGGCAACCGCCAAAGCGTTGGCTGAAGCGGGGGCGCATGTCATTCTGGTTGCGAGAACGGCAACCGATCTCGATAAAGTCGAAGAACAGATTTATCAAAAAGGCGGATCAGCGAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //