Array 1 44330-45643 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCK01000017.1 Streptomyces peucetius strain NRRL WC-3868 contig17.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================== ================== 44330 29 100.0 32 ............................. TCGATCAGAGACAGGCGCATGGCCAGGCGCAG 44391 29 93.1 32 ..........TA................. ACGATCGCCCACGCGCCGCCCTCCAGCATCGA 44452 29 93.1 32 ...T.......A................. GACTGGCTGCGCCGTAAGGCCGTCAAGAAGGC 44513 29 79.3 32 .AATA.T...................T.. ACCATCACGGGCGGCACGATCACCGGCACCGA 44574 29 89.7 32 ..A..........A.T............. TAGACGACCCGGCCGCCGAACATCCGGGCTAC 44635 29 82.8 22 ....A.................CA.TT.. GACCTCGGTATCGAGAATGACG Deletion [44686] 44686 29 69.0 41 TTA..GG....C.....C..C.......A TAAAGAACCAGCAAAGCCCTACCAACGCCCCAGCTCACGGA AG [44711] 44758 29 86.2 32 ..GAAT....................... ATCTCGGCGGCCCCGCCGATTTCGCGCGGATC 44819 29 86.2 32 ..GAA.......A................ GTCATCGTCGCGCTCGCCGAGAAACTGGAAGA 44880 29 82.8 32 ..GAA.........C..A........... TTGCAGCGCGAACCTGACGGTCTGCCGCAGCA 44941 29 75.9 31 .T.........A.C.......GCC..T.. GCCTGGAGGGGTCCGCCTTGATGCACATCAG 45002 29 82.8 30 ....A...G..A......A.A........ TCGACGTCGCTGGTCATTCCAGTGGCGGAG 45061 29 75.9 84 AAG.C......A.....A..........C TACGCACTGTTCATGGCCGTGGTGGCCCTGCGGTGCGCCCTGCGCGTCCGGGTGGGCCAAGTTGCGGAGTGTGCTCACCGATCC 45174 29 75.9 32 .T.T.G...T..T.......A.......C GCATACGCCTTCTGCGCGCCGAAGCTCAGCCA A [45189] 45236 29 75.9 30 .T....T.T......T.A...T.A..... TGTTCCGGACGACGACGCAGTCGCCGGGGG 45296 29 72.4 31 C.T.C...T..A..C..A.........T. CCCCGTTCTTCATGGTTCCGGTCTGGGTACC 45357 29 86.2 55 CT......T..A................. GCGAGCGGGCTGATGTCGCGCTGTGACTCGCTGCCCCCCGCGCGACCGGGGACGC 45441 29 89.7 32 ....AT.......C............... GCGGCACAGGAACTCGCCGCGGCAGCCGTCAA 45502 29 86.2 84 ....A......A...T......A...... AAGAGCAAGCGGCTCCGTGCCGAGCCCATCGCGGCGAGTCCGGGAGGGAGCCAGCCCGAGGGCTGATGGACCGGCGCGACACCT 45615 28 72.4 0 .......A...A.-AT.CA...A...... | T [45617] ========== ====== ====== ====== ============================= ==================================================================================== ================== 20 29 82.8 38 GGCCGCCCCGCGCGTCCGGGGATGAACCG # Left flank : TGGACCGCACTCCCCCGCAACGCCCTCACCGCACCCCCCGACACCCGCACCATCACCCTGCACATCACCCCCGGCCAACGCCACCGCTTCCGCACCGTCATCAACCCCGCCCGCTACACCACCCCACCCGGCCCTCCCCGCCCTCGCAACCGCAACGCCCCCGCCGACACCAGCCCCGACGCCGTCCTCACCTGGTTCACCTCACGCCTCCAGCCCCCCGGCCACCCCGACTACGACCGCTGGCCCCGCATCGGCGCCACCGCCGACCCCACCGAACTCACCGCCCGCCCACTGCCCGGCCTGGCCAGCCACACCGCCCACCCCGGCATGAAAATCAACCGCGCCGAAATCACCGGCCACCTCACCATCACCGATCCCCACACCTACGCCAAAACCCTCACCCACGGCATCGGCCGCTCCCGCGCCTACGGCTGCGGCCTCCTCCTCACCCAACCCGTAAACAACCAGCAAAGCCCTGCCAACATCCCAGCTCACGAAGG # Right flank : GAAGATGAGGCAGCTTCCCGGTCGAGGAGGAGGACTGTTCCCCACTCTGCCGCCGCGGCGAGGTGTCGCTTCCTCGCCCATTGGTTCACCGTGAAGACCCGGTGGCGCTTGAGCTCCGACACCACCGACCACGCCCCCACCAAGAAGATCGCCACCGGCTGCGCCGATCCTCGCAACACCGTGGTCCACGCCCGCTGCTCCCGAGTCCGTACGGCACAGCGGCAGCCCCACTGTCCGACCCGGCACCGTGTCCCGGACCGGCGCCTGTTCCGGTGCGCCGGCTCTGCGTCATCCGCCTCCCCCCCGCCCAGTCATCCGGGCTCTGGCACGTGCGGAGCCGTCAACGCAGAGCGGTCTTGAAACCTTTGATGATCCAGCGGGGAGGAGACGTCACAGGCATGTTGCAGACGATGAGGTACGGCAGACCGGCCACGATCGATCCGGGCTCGAGTGGCGACCGACCACCGGGTAAGGAGCGACACACGTTGGACGGCAATAGA # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.16, 5:-1.5, 6:0.25, 7:-0.30, 8:1, 9:0.12, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCGCCCCGCGCGTCCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49530-49744 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCK01000043.1 Streptomyces peucetius strain NRRL WC-3868 contig41.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49530 29 96.6 32 ..T.......................... CCACACACGGGCTGACGCGCATCACCCTGTCC 49591 29 100.0 32 ............................. AGTCCATCACAGCCGTTGCGGGACGCTCTTCG GCG [49605] 49655 29 100.0 32 ............................. TACGCGTCGTCCAGCTTCAGGCGGTTGGCGGT 49716 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GGCGGCACCCTCACGCGCGTGGGGAGCGG # Left flank : GTCCGGTGAGGGCTGCAGTTGATCCGTATGGTGCATTTTGTGCGGCTGATGATGTGTGTGCGTTAAGTTTTGGCTCTTCTCTTGACTAGTAAGGGCGAAGGGCGGCTGCAGCTCTTCTGGATGAGCGAGAGAAGAGGGATGACATCCCAGATCCCGGACTATGTGATGGCTGTGGCGGGTGCTGTGACTGCGGCCCGCGCAATCGGGGTGGGTTCACTGTTCCGCCGTGTCACAGGTAAAAGGCCGGCACGCATGGTGCCGGCTTCCCCCTGCCGACAGCAGGTGCCAACTCGCGGTTCAGTGTCCGTAGATCTCTCATTTCGGTGTCCTAGCGGTGGGCTTTCTCATGTGCACAGATGAGGGGGTGTGTGGCGCAGCGAGTGCGAGATACGTGGGACACAAACTGCAAAGCCGCAGGACACTTTCATGCGAGTTGCAATAGCGCGCGAGCGCGTCTTCATGATTGGTGTGCACGGCTCCTCAGGGAGCGCCGATAGCCG # Right flank : GAGGTGGTGACCTGCGGTTCTTGGCGGGGCTGGCTCTGATTTTACTCATTTGTGCTGCCGCACACGGGGTGGTTCAGGAGCGAAGAGGTAGAACTGTCGTTTGCTTTCGTTCGGAGGTTCCTGCCAGTTGTTCGGCCTCTTCGGTGGACGGTGGATGCTGGATCTCGCGCTTACTCCAAGGCCCTTGAGCGGAAGGCAGAGCCGGGGCGGCGTCGCCGATTCCAAGACGCCAGGTCGCGACTGGTCCGTCGAAACGTCGGTTCAGTCGTCACAGCCCGGCCCCGTGGCTGTGCGAACTGCCTGAAACGCCGGCCGCGCTATGGGCCCGGCCTGTGCAGGGCGGTGGGCTGATGCCGGCTCAAGGCCGGTCATAGGCGTCTGCGGGCTGTGCCGCCGTCGACCGTTGGGCGAGGCGGTATACCACGCGGTGCGGGGCCGGTTCACGAGGCGGCGTCGATGCCGTAGTCGGTGGCCAGGCCGGCCAGTCCGGTGTCGTAGCC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGGCACCCTCACGCGCGTGGGGAGCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //