Array 1 51190-51613 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBG01000017.1 Clostridium tetani strain 1240 contig_0017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 51190 30 100.0 35 .............................. ATGTTTTCTCTCCAATATGTTAAGCCTGCATAACT 51255 30 100.0 36 .............................. AACAATACCGCCTTTCTAATCCTAATTTTTGTTTTA 51321 30 100.0 36 .............................. ATCTATTAATTGTAGTTACAATTTTCTTTAATACCG 51387 30 96.7 35 ...T.......................... GAAAAAGAAATAAATAGAATTAGAAAAGAGTGTAC 51452 30 100.0 35 .............................. TTGATTTGGTGAGTTTCTTCATTTGTAAGTGCTTT 51517 30 100.0 37 .............................. TTGTCTTTAGGTTTTCCATTCCCATATTGTTTTGCAA 51584 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.5 36 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : AAAGTTCAGAGGAAACAGTAATTAATGGTGAGAAAGTATATGTAGATGGTGATAATATTTTTAAATTACCAATTAGTGAAGAGGATTTTTGTAAATCTCTATACTTTAATAGTATAGTAGTAAGAATAGACGAAGATATGGAGATAATGGATTCAAGAATAATGATAGAAGCTTTTATAGATACAAATCCAGATTATTTTGCAGGTCATTCAATGGAAGTTACAATAACAGATAATTATAAAATATCAGTTGATGGATTGGCGGGTTAATATATAATATGTTATGTGTATGGGATATAAATATATTAAATTAAAAATTATAAACTTTCCCAGGTGATTTTAAATAGGAATATAGTTTAAGGTATTGATTTATAAGGGTTTATATGTTATTTTTGAGTTGGTTTTTCAAAAGTTAAATCGCTTGGGAAAGTTTTAGAGAAATGTTGAAGTATCAATGGTTTTATGGAATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TCAACTAATGATAAAGTAGTAGTGTTTAACACTGACGATAGTGAAATTTCAGAAATTATAACGGCAGCTATCCATGACTCTAGTGGCATAGGTTTAGAAGATACGAGTTCTTTAAAATTTATGATTTTAGAAGGGGATTGGAATAATAAAGAAATTCCACAATGCTTTGAAGGAATTAAGTCCGCAGGTGAAAGTGGTAAAATACAAGTTTTAAGTAGAGGTAAAAATTTATTTAATAAAGATAGTATTTATTATTTAAACGTAGTTACAGGTAAGACTATAAGGAATCTAAGTAAATTTGGTAGTTCTTTTATTGTAGTTAAACCCAACACAAGTTATATGTAGTAGGATCAACGCATTAGAAGGAAATGTTGTAGATATTGAAAAAGAATTAAATGCTAAAGCTAATCAAGAAGATTTTCATAAATTGGTTAAATTAGATAAACATGCAGATAGTATAATTAAGTTTATTTCTGAGCTTAATTGTACAGAATCCTTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 2173-2596 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBG01000021.1 Clostridium tetani strain 1240 contig_0021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2173 30 100.0 36 .............................. ACTATACCAATGCCTAAAACCCATATCCTTGGAATA 2239 30 100.0 36 .............................. TCCCATATACCATTAATTTGACCTGTAGCAGTGTCA 2305 30 100.0 34 .............................. CAGATTATATTATGTTTATTGCCTAGCTGATCTT 2369 30 100.0 35 .............................. TAGTTAAAATGTGAGTATCTTATGTCCCCAATTAT 2434 30 100.0 36 .............................. TGCCTTCCTCTAAGTAACTAAACAATTCATTTATCT 2500 30 100.0 37 .............................. AAGATAATGAATACCAACCAGAAGAAGCAGCAAAAAC 2567 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.0 36 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ACTATTGGACTCTAAAAAAGACGATGAAATAACAATAATTAATAACTCTAAAATAGATGAGGGCAAATTCTATATTGGAGTTTTAAATTCTGAGAATGAGATTATTGCTTTTGATAAAGAAAAGCAAGACAAAATAACATTTGTAACTCCTGAAGAAGGATGCTATCTTGTTAGGATTTTAGCTAAAAACTCTAGTGGAAAATGTGATGTGAAAGTAGATTCTAAAAAAGGCATAGATTTTAATTACAATTCTATTAATGGGCATAATATGGGTTTACTAGAGAAAAATAATTGAATAAATCTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAAGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATGGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTGG # Right flank : AAACTAAGCGAAACTATTAAAAGACAGGAAGTAGAAAAATGTGATACTTAAATTTACTGCCAATTCTTAATTTCAAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTATTATAAACTTACTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAAGGTATATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTCACAAAAGTACAGGAAAAGCTTACTGACTGTGAAGTAACCATATACAGTGACATTGTTCCTGACCCATCTGTAGAAGTTATTGCATCTGGTATTCAAAAATTACAGAGTTGTAATGCACAGATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 18391-18749 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBG01000021.1 Clostridium tetani strain 1240 contig_0021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 18391 30 100.0 34 .............................. AATGTAACTACTGTAGCATTCGCATCAAGTAAAA 18455 30 100.0 36 .............................. CTTGCCTGTGTAACTATTGGTAACAATACAACCCCT 18521 30 100.0 36 .............................. TGGGATTAGACATATTATTAAAGTCTTGTGGTATTT 18587 30 100.0 36 .............................. GATGAATAAGGCTAGAAGGAATTTTAAAATTTAAAA 18653 30 100.0 35 .............................. GTTTTTATTTTTTTTGTACCAATATACACAGTAAC 18718 30 93.3 0 ........................C.C... | AC [18742] ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.9 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : GGCGGACTTGTAACTGTTATGGTTAGAGGAGATGTTGGAGCTGTTAAGGCTGCTACAGATGCTGGAGCTGCTGCTGCACAACGTGTTGGAGAATTAGTGTCAGTTCACGTTATACCACGTCCACATTCTGAAGTTGAAGTAATTCTTCCATCAGCTAAAGAAACTGCAAAATAATATTTTAATTATAGTGTAAAGTAAAAAACGTCGCTAAAATTTTTTAGTGACGTTTTTATTTTTGAAAATATAATGGTTAATGAAATAAGTATTTAAATATGCAGAGCCTTTTAAATTATATAGAATTATTGATATAATTAACATATGAATTTTACCAGCCGAAAAGAATTTTAGAATCTAGCTTAATCGTTGATATATAAGAGTTTAAGGTAGGTTTTTATATGATTTATAAAATTTTAAAATCACCTGGTAAATTTTCAATGAAACCTTGAAATATCAATATGTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TTCTTTCCAAATATCTTATTCTATCAGCGTCTTACCACCGGGCAGTTCAGTATAACAGTAAAAGGATATGATGGATTTATAGCAGAGTAATGTTAGAGGTAGTTTTTAGCTTAGGCTAGGAGCTACCTCTTTTTTATTGTTGTAAAATGTATAATAATATAATAAATATTTACATTTAGTCCTATATTGTACTATAATGTAAATAATATTATTAAGTATGGGGGGATTTAAATGAAAGCTTTGACTAAGATAGGTAAAATACTTGTAATATTAATAATTTTATCCGTCATAATTGCTATATCACCAAAGCTTGGGTCTATAGTATTTACAATAGTTCCAATAATATATTTAATCTATCTATTCAAGAAAGGACCTAAGTTTAAGAATTATAATTTTTTACTAAAGGGGTTAATTAGTTTCTTTTTAATATTAGTTTCAACCACAGGAATTGGAGGAGTTTTTTCTGAATTTGGAGAAGAAGATAATAAGTGGAAACAAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 263-1193 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBG01000039.1 Clostridium tetani strain 1240 contig_0039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 263 30 100.0 32 .............................. TCTATTTTACCATTGATAGCTTGAACTCTCTC 325 30 100.0 36 .............................. TTCCAATAAAGAAATCGAAATATATTTAACCCAAGT 391 30 100.0 35 .............................. TTGTAATATTAAGTGTTTCTTGAAGCAGAAGTCTA 456 30 100.0 34 .............................. ACAAATTATAAGGGAAGGTCTAAGCAGGATATAC 520 30 100.0 35 .............................. AAAGAGGTGAGGTTAAATTGGGATAGTAAACAAAG 585 30 100.0 34 .............................. TAAGGAACAAAAAATAAAACAATATGAAGAATAT 649 30 100.0 37 .............................. AAAGAAATAAAATCAAAAGAAGGAGAAATATACCAAA 716 30 100.0 32 .............................. ATGGTTGGAATAACTATGGTTGCGAACATGGA 778 30 100.0 34 .............................. GCATAAATTGTATCTCCTAATTGATTAGTCTGAT 842 30 100.0 34 .............................. TAAACCATCCTCTATGCTCATGCGTATACATATA 906 30 100.0 35 .............................. TAATAATTTTATCTATTTTTCCTGGACCTTAAGGT 971 30 100.0 34 .............................. TAGTTTTTGTAGTAAAGGAAATAACTATGGATAT 1035 30 100.0 34 .............................. GTCCCTGTACCTAAAAATCTAAGTATTTCTAATA 1099 30 100.0 35 .............................. TTCTGTTTTCTATATTTTTATCTACTAATGTTAAT 1164 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 99.8 34 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCATACAGTTGTACAGGGGAAGACTTGATATTATAAATAAAAGTTTTACCAGGTGGTTTTAAATAGGAATATGCTCTAATATATTGATTTATAAGGGTTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTGG # Right flank : TATACATTAAAAAAACTTAGCCATGTCTTTTAAACCCATGATTATTCTGTCTTAATATCTTGTTCTATGGTAATATAATAGGGTAAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGTATATTAAAATTGGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGACAGTATGGGAAAACCACTACTTTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 4701-4018 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBG01000029.1 Clostridium tetani strain 1240 contig_0029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4700 30 100.0 35 .............................. AGTTATTATAACTGCTGCAAAAATAACAGGTGATT 4635 30 100.0 34 .............................. GGCTAAAATTTCTCTTAAAACCGCAGATGTAAAT 4571 30 100.0 35 .............................. TAGAACTTCAACTACGGATCAGCATTTAGATAGAG 4506 30 100.0 37 .............................. AAGTGTAAAGATGACCCTTCTTTTAAAAAGTCACTAC 4439 30 100.0 36 .............................. TATTACCACACCTTTAATTCGTCCATTTTTTTATTA 4373 30 100.0 34 .............................. GCCCTAGCTCCTGCCTTCCCCATACCCTCAACTT 4309 30 100.0 37 .............................. TAGCTCTCTTCAAACTTACCCAAATCTTCTAAAAGAA 4242 30 100.0 36 .............................. TATATTTTTATTCCTAATTCCTCTAGTGCAGATTTA 4176 30 100.0 34 .............................. TATGGAAACATTGATGTATTTCTATGTTCTCATA 4112 30 100.0 35 .............................. AGTTATAATCATATAGTTTTTTCGCTGGCACATAA 4047 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 100.0 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AAGTGGAAGAAACCCATATAAATGCAGAAGATAATATTAAAAAGATAATAGGGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAATAAACAGAGTTCTTGGTTTTAGAGGGAGTTTTTACTCCCCATAAAGCTTAGAAATCGTTATCCAGGGACTTAGCTACTCTTTACTCCCGCTTTAAAGAAAATGGAAGTATTAGAGCTTATCGTCATCGGATAAACTAAAAGCTCTCACATGATGGGAGCTTTTAGTTTTTTAACTTATAAAAATAAGTATATACTTATAGTGTTATGAGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGAAAATATAGCTTAGAGTCTTGATTTATAAGGGGTTACATACTATTTTTAAATGTGATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TAAGTTCCTTTCTTTTTAGTGGAGTACATAGATAGTATGCAAATGCTCTTAATAGAAATGTAAGGAAAAATATGGTATAATGGCATTACCATAAATTTGTGGGAGTGATATTTTATGAATATCTTAACAAATTGTATTATTGGTTTTATTTTTATTGTAATTGGATTGGTATTAAGGGCATATCCACCGCAGCATATAAATAATAGTCTTGGATATAGAACACCATTTTCTATAAAAAATAAAGACACATGGTATGAGGGAAATCGTTTCTGCGGGACAATACTTTTAATAAGTAGTATTATTTTTATACCATTTTCAATATTAATAAAATATTTATATAGCAATAATTTAAATTTATCAATGGGAATATCGTCATTGAGCTTGTTGATTATTATAATTATAGGTATTGTATATACCGAAATACATTTAAGAATGATATTTGATAAGAATGGAACAAGAAAATGAGATAGTTAAAGGGAAGTCTAATGACTTCCCTTATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //