Array 1 1855945-1856247 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048407.1 Thermaerobacter sp. PB12/4term chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================= ================== 1855945 31 100.0 35 ............................... ATCGCGGCGCCACCCGCCAGGGAGAGGGGCGCTGT 1856011 31 100.0 41 ............................... CGGCCGCATCCGCTGGCAAAGCGGATCAAGGTCAGCAACAA 1856083 31 100.0 36 ............................... TTGTGCACGCCCGCGACGATGTGCTCGCCCTCGTGG 1856150 31 100.0 36 ............................... GCGACCTGAACGACGGATGGCAGCGGGGCCTCCGAT 1856217 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ========================================= ================== 5 31 100.0 37 GTTTGTAGGGTACCTATGACTCGGGTTTGAC # Left flank : ACGTGCTCGAGCGCAGCGAGGACGTTGACCGCGTCGGCCGGGCTCGTGGGAACTCCCGCGGCCCGCAAGCGACGCACCAGGTGGATCACGTGGTCCCGCAAGGTCTTGGACGGCGCCTCCAAGGGATCATCCCCCCAGCCATGTTTCCGGTGATGCTTTCGGCGATCCTTTCGGCGATGTCTTCGGCGCTCTTTTCGGGGCTGGTCCGCAGGACCGGCTTGTTATGCAGCGGTTTCCGGTTGTTCGTGCAGCCGCGCCCGTAGGTGTTTCTGTAACCGTTGCCGCAGTCATTGTCCACCTACCCTAATGTTTTCTGTCGACCTCCGAACTCCCCCAAACCCCTGGAGGTCGACAGCAGGACCCACGTTTTTCCACCCCTTTGCCAGCAAGGCTTCGTCGCCTATTTGCATACATGAGGACCCAGTTGACCATTTTCTGGATCGACAGCACTGCCGTCGGTGAAGCCAAGAAGGACAAGGCTTCGGCGGGGCGAATAACGG # Right flank : CCGTTGACGGCCCTGCTTGGTGCCACGCCGCCCCAGGAACCCGCATGAATCAAGGGGTTTCCATGGGGCGGCGGTTCTTTTGGGTCAAAAGTGTAGTGCCACGTGTATTCGGGAAACACTTGTATGGTAAGCACGAACATGCTATGATGGTTGTGCCATGTTCATCCGCCAGAAGACCTTCAAGAACAAAGACGGCTCCACCCGCACCTACCTCCAGCTCGTCGAGAGCGTGCGCCAGGGCGGCCGCGTCCGCCAGCGGGTGGTCGCCACCCTGGGCCGGCTGGAGGATCTTCAGGACGGCCGCCTCGATGCCCCTCATCGAGAACCTGGCCCGCTTCTCCCAGAGCACCTGGCGTCGGCTCGAAGAACAGGCCGAACGTCTGAACGTCCGCTGGTCCAAGCAGTGGGGACCGGCCCTGATCTTCGAGCGCCTCTGGCAGGAGGCAGAGCTGGACAAGGCCTTCGCCGCCCTGCTCGAAGACCGCCAGCTTGCCTTCGAT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGGTACCTATGACTCGGGTTTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 1858156-1858587 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048407.1 Thermaerobacter sp. PB12/4term chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1858156 30 100.0 36 .............................. TACTGCGGCCACACTGGCCGTGTCAAGCTGGCTGTC 1858222 30 100.0 36 .............................. GAAGGGATGGATGCCTCTCGTTCATGCGTGGTACGC 1858288 30 100.0 39 .............................. TGGCCCATGGGGCTGGTGGTGAAGATGCCCCAGCCCCGC 1858357 30 100.0 37 .............................. AACGCCTCCGCATTGAGCGGGTCGAGGCCGTCCGAGC 1858424 30 100.0 37 .............................. CGCAGGTCGATGAGCGTATCTCGCAGCGACTCATTCT 1858491 30 100.0 37 .............................. CGGGAGTACGCGGAGTGGGCCGCCTTTTATGCGGCCG 1858558 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 100.0 37 GTTTGTAGGGTACCTATGAGGGATCGAAAC # Left flank : GCCTACAAGGATCTCTGGCGGGTCGAGCGCGCCTTCCGCACCCTCAAGTCCGCCCTGGACTTGCGGCCGATGTTCCACTGGACGGAGCGGCGGGTCCGGGGGCACGTCATGGTCTGTTTCCTGGCGCTGGTGCTGGAGAGCCTGTTGTTGCGCAAGCTCCGCCAGCAAAACCCCGAGGCGAGCTACGAGGACGTGCTGAGCGACCTCGCCCAGCTCCATGCCGTGGCGGTGGAACTCGACGGCGAGACCTACCTCACCCGGACCGAGCTGGTGGGCCAAGCCTACGAAGCCTTCAAAGCCGTAGGTCTGCGGCCGCCGGCGCGGGTGCAGCCGATGCCACGTCCCGCCACGACCCCCGCCGGGTAGTGTAGTGGTACGCAGTCCCCGTGTGCCCAAGAAAGCCTTGTGTTTCAAGGGTTCTCAAGGATCACGGTGTCAAAGTCGAGTATGAGGGATCGAAACATCGGGCACTCGGGCCACGGCCAACGCTGGTGCGGTCG # Right flank : CCCATCGCAGAGCGTCACCTCCCAATTGTCATCGCCGGTGTTAAACTGACCCGGGATCGCCGGGTAAGAATTGACCCACCCCCCAGCAAAGACACCTTCCAAATCCAGCCACGGAGCGGGAGGTGTCCTCGGCAACATGCTGGGAGGTGGGAAGGTGAAACGCCTATACGAGCTTCATGGCGAGGGTCGGTCCATCCGGGAGATCGCACGAATCCTCGGGATCTCCCGGAACACGGTGCGGCGGTACTTGCGTGCCACCGAGGTGCCCAAGCCGGCCCCTCGGGCGGCCCGCGGCTCCAAGCTCGACCCCTACAAGGAGTTTATCCTGCAACGGGTGGCGGAGGGAGTGGAAAACTGCGTCGTCCTTCTTCGCGAGCTGCGGACCCAGGGTTACGAGGGGGGCTACACCATCCTCAAGGAGTTCGTCCGGCCCCTGCGTCGCCCCCGCTCCATGCCGGGCACCGTCCGGTTCGAGACGCAGCCGGGCCAGCAGACGCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGGTACCTATGAGGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2553715-2554601 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048407.1 Thermaerobacter sp. PB12/4term chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2553715 30 100.0 35 .............................. GCCAAAAGCACATACTTGCCGTCGAACCCCTCCCC 2553780 30 100.0 37 .............................. CTCGATATGTGAACACTGTGGGACCCATGGCCATTGT 2553847 30 100.0 37 .............................. TGGCGTGGTATAATATGGGTAGTCAGGGGCGGTACGG 2553914 30 100.0 36 .............................. AGTTCATGAACCAGTTCACGAACCCAATCATCCTCT 2553980 30 100.0 36 .............................. GGCGGTACGGAATACCGTACCGCCCCTGACTACCCA 2554046 30 100.0 36 .............................. TTCCAGCGCCCGCCGAACTTCTTTGCGACGGGCGCC 2554112 30 100.0 35 .............................. CGCACAACGAAAAACCATGTTCGTCCCAGGCCAGG 2554177 30 100.0 36 .............................. GCCCTCCCTTGTGGCCCGGTCGCGGCCCCCGTTTCA 2554243 30 100.0 35 .............................. GCCCGGATGCGGTCATCGAGCGGCTTTGGTCGCAC 2554308 30 100.0 36 .............................. GCGGCGATCAGTCCATCGACATCGACCAGGCGCGGC 2554374 30 100.0 35 .............................. TTCTAAGAGCCGGCTCAGCATGGCGCCTGCCGTCA 2554439 30 100.0 38 .............................. GTCGGGCGGGAATTGGGGCTTTTAAACCAAGTTCGAGA 2554507 30 100.0 35 .............................. CTGCGCTATTGCCACGATCATTTGGGCTGGCGTCC 2554572 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 100.0 36 GTTTGTAGGGTGCCTATGAGGAATCGAAAC # Left flank : ACGAAGCGCATTGAGCATCCCCCCGCCGATGTGGTCGGTACTGGCAGGCTCGCCTTCGGCGCCCCCATGGTGGATGGGGCGCCTTCCGCCGGCGGCCGACCCAGCGGTACCGCCGGCCGGCTTCGGCGCCCCATGGTGCATGGGGCGCCCGGCCATCCAGGTCGGTTCTGGCAAGCGCGCAATGGCAGGTTCGCAATGAAGGGCCCGTCCTCCTGGAGGGGGGTCTGGGACTTGGGGATGGGATGACGGCGCATGGGACGATCGAGCATAGCCCGATGGATAGGTGGCCGGGGGAGGAGGCAAGGTGGCCCTGCTGTCGACCTCCGATCACGGCAAAACCCCGGGAGGTCGACAGCAGGAGGTAATTCCACCCAGTTGGCGCCACGACTGCGTTTTTGGCTTGCCCGCATCCTGTTTTGCCCAGTATCCCTGTATCTGGATCGACAGAAAGCGGGCGCAGGAACCGTTGAAGGAGAACGGTTTCTTCGGTCGAAGATGGG # Right flank : CCCGTCACCGCCACCGTTTCGCCCGCTTCGCCCGTTTGTGTTTGTAGGGTGCCTATGACTCGGGTTTGACCGTTGACGGCCCTGCTTGGTGCCACGCCGCCCCAGGAACCCGCATGAATCAAGGGGTTTCCATGGGGCGGCGGTTCTTTTGGGTCAAAAGTGTAGTGCCACGTGTATTCGGGAAACACTTGTATGGTAAGCACGAACATGCTATGATGGTTGTGCCATGTTCATCCGCCAGAAGACCTTCAAGAACAAAGACGGCTCCACCCGCACCTACCTCCAGCTCGTCGAGAGCGTGCGCCAGGGCGGCCGCGTCCGCCAGCGGGTGGTCGCCACCCTGGGCCGGCTGGAGGATCTTCAGGACGGCCGCCTCGATGCCCTCATCGAGAACCTGGCCCGCTTCTCCCAGAGCACCTGGCGTCGGCTCGAAGAACAGGCCGAACGTCTGAACGTCCGCTGGTCCAAGCAGTGGGGACCGGCCCTGATCTTCGAGCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGGTGCCTATGAGGAATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTGCCTATGAGGAATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2556508-2558932 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048407.1 Thermaerobacter sp. PB12/4term chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2556508 30 76.7 36 CGG....AA...AG................ ACGATCCCCAGGCCGCTTCGAACATGCGGTACGCAG C,C [2556511,2556517] 2556576 30 100.0 37 .............................. TCCGCAAGACTTCCATGGCATGAGGCGACCAGGTCAT 2556643 30 100.0 36 .............................. GCGCAGATGGCGGCCCGGGAAAGTGAGGGCAGCGGC 2556709 30 100.0 38 .............................. CGGGACCTCGACGCCGAGCGGTCAGTCCTTGGCGCCTG 2556777 30 100.0 36 .............................. CCGGCGCACCACCTCCACGGGCCGCAAGACCTGCAG 2556843 30 100.0 35 .............................. TTCCGGGCCGAGGACGTGCTCGCTCTGGTGTCGTG 2556908 30 100.0 36 .............................. CGCCCTGGGCGGCGACGCGCACCGACTCGCCCAGCG 2556974 30 100.0 37 .............................. GGTCGAGAACGTCCGGGTCGCCGGCTGCGAAGCCACC 2557041 30 100.0 39 .............................. GGCTATGCGACCTACGACGACCTGCTGGCGGCCTCCGAG 2557110 30 100.0 36 .............................. TGCCGTCACGATCCGCCGGCCGCGCATGCGCACCCC 2557176 30 100.0 36 .............................. GAGCAGCTCGTCGCCAACGGACTCAGCAACCGCGAG 2557242 30 100.0 36 .............................. AGGCTTTGGATGAGATGGTTACTGACCGTCTTGGGG 2557308 30 100.0 35 .............................. CCACCCCTCGGGAAGAAACATGCGGGCCGCCAGGC 2557373 30 100.0 38 .............................. CCCATGGCTCACACCCGCCTCCCCACGATCTCACCCGA 2557441 30 100.0 35 .............................. TACCTGCTGGACGGCGACGGCGAGCCGGGCGCGGA 2557506 30 100.0 36 .............................. CGCCACCATCGGCCTCATGCTCATGGATGGGACATG 2557572 30 100.0 36 .............................. CGCGGTCACAGAGGTGGTGGGACAGCGGATCGTCTT 2557638 30 100.0 35 .............................. CCCGGCAGCGTCTCCACCGGCCCGTAGGACTGCCA 2557703 30 100.0 36 .............................. GATGCGGTGCGGCGCGTACTCGCCGCTCTCGATCTC 2557769 30 100.0 37 .............................. GGGGCGGACGCCGATAGCCTGGATGGTCTCAACCCGG 2557836 30 100.0 36 .............................. ACAGGGCGCCCGTGGCGCAGTATAATGGCGCCGAAG 2557902 30 100.0 37 .............................. CAGAAGAGCAACAGCAACAAGGTGGAAGTCATGATGA 2557969 30 100.0 39 .............................. GTATGGACCCGAATCGTGTCGTGGAGCATTGTGGATCTT 2558038 30 100.0 36 .............................. TCTCCTCATCAATCTCAAAAATTTCAACAACTATAT 2558104 30 96.7 37 ...................T.......... CTTTCTAGGACCCGACAATACGGCGTATCGACTTCAC 2558171 30 100.0 36 .............................. GGCGCCGCACCCGGAAGTAGTAGCCGTCCCGGTCTT 2558237 30 100.0 37 .............................. GAAGGGCACCTCTTCCTCGGCTGCATCCACCTCCGAC 2558304 30 100.0 38 .............................. CGGCGGCGCGATCACCGCCCAGTAGCGCCGGCCATGGT 2558372 30 100.0 37 .............................. GCGGAACGGAATGGACCCCGCCAAGGTTGCCACCACG 2558439 30 100.0 36 .............................. CCCACGCGGTGCCCGGTGCAGTGTGCCATGTCCAGG 2558505 30 100.0 36 .............................. CCCGTCGAGGTCACAGAGACGAAGGGGCGCCAGCGC 2558571 30 100.0 39 .............................. CACGTCGCAGGCTGGCCGAACTCGAAGCAGAGGCGCGGC 2558640 30 100.0 35 .............................. CCGCGACCGCTTCTTCGCCCCAGGACCGCGCCAGT 2558705 30 100.0 36 .............................. CCGCGTCGCCCTCTCGGGCTTAGTTGCTCTCGCAAC 2558771 30 100.0 36 .............................. GGGCAAGCAGGGCAAGTCGGGTGGCGGTGAAGGAGC 2558837 30 100.0 36 .............................. CTGCAGCCGAAGGAGACGGACCATCGCGTTCTTCGC 2558903 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 37 30 99.3 36 GTTTGTAGGGTGCCTATGAGGAATCGAAAC # Left flank : AGCCACCCGCTACGATGGGAAGTACCTGCTGCGCACCAACACCGACCTGGAACCGGAGGCGGTGGTCCGCGCCTACAAGGATCTCTGGCGGGTCGAGCGCGCCTTCCGCACCCTCAAGTCCGCCCTGGACTTGCGGCCGATGTTCCACTGGACGGAGCGGCGGGTCCGGGGGCACGTCATGGTCTGTTTCCTGGCGCTGGTGCTGGAGAGCCTGTTGTTGCGCAAGCTCCGCCAGCAAAACCCCGAGGCGAGCTACGAGGACGTGCTGAGCGACCTCGCCCAGCTCCATGCCGTGGCGGTGGAACTCGACGGCGAGACCTACCTCACCCGGACCGAGCTGGTGGGCCAAGCCTACGAAGCCTTCAAAGCCGTAGGTCTGCGGCCGCCGGCGCGGGTGCAGCCGATGCCACGTCCCGCCACGACCCCCGCCGGGTAGTGTAGTGGTACGCAGTCCCCGTGTGCCCAAGAAAGCCTTGTGTTTCAAGGGTTCTCAAGGATCA # Right flank : CCTGACGATCACGCTCCGGGTGGTGCACGCTGCAGTGTTTGTAGGGTGCCTATGTCAAGGCCGGTTGAATTTTGACCCACTTCGGCCGGTTGAAAAGTGACCCACCGGACCTTGGCAATCTGGTTCAGTCATCCTGATTCGGGTCCACGGTGCTGCGAAGGAGACCCGAGCGACGCTTCTCTCGGAGACGGTAGCTCTCGCCCCGGATGTTGATCACGTGACTGTGATGCAGCAACCGGTCGAGGATGGCCGTGGCGATGACCGGGTCACCGAACACCTCCCCCCAGTCGGCGAAGGTCTGGTTCGATGTGAGGACGATGCTGCCGCGCTCATACCGGGCCGCCACGAGCTGGAAGAACACCGTGGCGCCCACCTTGTCGAGGGGCAGATAGCCCAGTTCGTCGATGATCAGGAGCTTGGGCGCCAGGTAGATCCGCATCCGTCGTTCGAGCCGGCGCTCCTCGTAGGCGTTGCGTAGATCCTCGATGAGGCGGTGCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGGTGCCTATGAGGAATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTGCCTATGAGGAATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2562582-2563681 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048407.1 Thermaerobacter sp. PB12/4term chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2562582 30 93.3 35 T....C........................ GGCGAGCACGACTGTGGTAAGCATCACTACGGCGA CC,CC,ACA [2562588,2562592,2562597] 2562654 30 100.0 36 .............................. AGCCTGGACTACCTGCGAGGCGAGGCGGAGAAGGCC 2562720 30 100.0 36 .............................. CGCGCCAGCGGCTCCATGGCCTACACCGCCTCGTCG 2562786 30 100.0 36 .............................. TCAAGGTCCGCAGGTGCCTCGCCCCACCGGGCCGGT 2562852 30 100.0 38 .............................. ATGACACCAGCGGCTAGATAACCCCGCGCCGTGGGCAT 2562920 30 100.0 36 .............................. GTCATAGATCGTGGTCGCCGCTGCCGGCTGGACGGG 2562986 30 100.0 36 .............................. AGTGTGGGACTCCTGCTCCTGCAGCTGCGGCGCCTG 2563052 30 100.0 36 .............................. TTCCCGGGCCACCGCATCGCGGCCACCCGTTTCGCG 2563118 30 100.0 37 .............................. CACCGACCACGCCGTTCGTGCTGGCGAGCAAACACCG 2563185 30 96.7 37 ...........A.................. CTTAGGCGCCGCATCCCGCCACGCCAGCCCTGCCCAG 2563252 30 96.7 38 .................C............ TCGGTGGCAACCGTGAGCTCCGCGCCGCAGCGCCGCAC 2563320 30 96.7 35 .....G........................ GCGAGCGCCTCGCCCTTCAAGCCGGCGACGCTCAC 2563385 30 100.0 36 .............................. ATTTGGACTCTATGTCCAATCGCCAGGGGATCCAAG 2563451 30 96.7 36 ..............C............... CCGGCACTCCGCCCAGTATGGGCAGGCCGTCGGCGA 2563517 30 100.0 38 .............................. CCGGAGCCGGGACCAGAAGCGCTTCAAGGTGACGCCGG 2563585 30 100.0 37 .............................. TTCTCCCGCAGAAAATACGGTGTGGCGTCGATCACGT 2563652 30 90.0 0 ...........A............T....T | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 98.2 36 GTTTGTAGGGTGCCTATGAGGAATCGAAAC # Left flank : GAAAGTAAATCGTGTACGGTAAAGGCGTTTCCGGTGACCTCGAGGGCCACGCAATCGTCCGCACGCAGTTGCTGGACGAAGGTTGCCCACCCTGCATCGGTATTGGGGAACCGGAAATGCCTTCCCTTTTGTACGTCCACCTGCCATTCGCAGCCGTGGACGTACCGTTTATGAAGATCCAGCCCGAAATACCGTGGCACGGTGTTGTTCCCCCTCTCCCGGGCTCTTGGGGCGCAGACGGCGATCGCAGCGCACTCACCTGTCCGGGCTATCGGCCAAAGCCGCGCCCATGTAGGCGGTTCGCAGGAGGGGGCCGACCAGACAAAATTCCGAGCTCAAGGCCCACGACCCCTCGCGGCCGCCCTCCTGCCTGCGCCCGCCAAGGGGCCGCCTACGGATCTGGACACACCCTTACCGAGGCGCCCACGCTTGTCCTGCCGCCCGGTGGGGGCCTGCACTTCGATCATGCCGACAAAATTCATCCGACCCTACTGGGTCAT # Right flank : TGCCCACGGGGACAAAAAGTGAACCATGTCTAAGGGTTGACCACGGCACAGCACCAGGTGCCGCACCGAAAAGCACCGGCGCGACACCCGGCCCTCCTCCTCACGCTAGGCCGCGCCGTAACACCCGTGCCGCAATGGCCAGTGCCACCGTGTCGAAGGCCAGGAGGATTCCCAACATGGAAAAGACCAGTTGTGTATCCCAGCCGTTTAGGACCAGCGCCCGGGTGGCCTCGATGGCGTAGGTCATGGGATTGAGCCGGGCCAGGACCTGCATCCACCCCGGCATGAGGTCAAGGGGGGCCAGGGCGGAACTCAAAAAGAGCAGGGGTAGACTCAGAAACGCCGTGATGGTAAAGAACTCGGGGTGCCGGCGAACGGCGAAGGCCAAGGCAATCGACAAGGTAGCGACCCCCGCACCGAACAGGACGCCGATCCCCAGGGCCGCCACGATCCCGCCCAGGCCGGTGGCGAAACGAACCCCCAGCCCGTAGGCTGTCAGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGGTGCCTATGAGGAATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTGCCTATGAGGAATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //