Array 1 6262-7388 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEVI01000219.1 Escherichia coli strain KCJK8456 NODE_219_length_7645_cov_3.500399, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6262 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 6323 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 6384 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 6445 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 6506 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 6567 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 6628 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 6689 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 6750 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 6811 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 6872 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 6933 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 6994 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 7055 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 7116 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 7177 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 7238 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 7299 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 7360 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 386-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEVI01000603.1 Escherichia coli strain KCJK8456 NODE_603_length_432_cov_1.921311, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 385 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 324 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 263 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 201 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 140 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGCGGGGATAAACCGGCGCACCGTTGCGTCGAAAAGGCGCTGGAGA # Right flank : GCTGCGTAGCGACCTTTGCTCTCAATTTCGTTGGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //