Array 1 605971-606914 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQKJ010000002.1 Pseudomonas aeruginosa strain ZYPA27 NODE_2_length_895743_cov_30.440838_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 605971 29 100.0 32 ............................. CGATGTTCGATGAGCTTGTGCTCGGCGCGATC 606032 29 100.0 32 ............................. GCATGGCAGCACACTTGAGCGAGGCGCACCCG 606093 29 100.0 32 ............................. TAAGCACCGACCACCCACGGGCTTAATTGTCC 606154 29 100.0 32 ............................. CCCCCAGGACGGGAAATTCTTGCTCCTGAAAA 606215 29 100.0 32 ............................. ACTTGAGTGATGCGCAGAAGCGCGCTCATGAG 606276 29 100.0 32 ............................. AGCGGGTGCGCTTATTCTGCGGATTCATCGAA 606337 29 100.0 32 ............................. GGGAAATGGGCTTGAAGGGCGAAGGGAATGGT 606398 29 100.0 32 ............................. AAGGCCGACGCCGACCTGGAAGTCCTCCAGCT 606459 29 100.0 32 ............................. GCAGTGACCGCCGCCGGCCTGGACCTGGTCCG 606520 29 96.6 32 ..........T.................. TCGGGTATAGGTGATACCCGACTTTTGTCTCA 606581 29 96.6 32 ..........................T.. CCCCCAGTTTGGGGGCTTTCTTTTTGGCAAAA 606642 29 100.0 32 ............................. AACAGAGTGAGTTCGCCATTTGGAACGTGAGC 606703 29 100.0 32 ............................. CGGGTTACCGGTGGCGTATGTAGTCATGCAAA 606764 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 606825 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 606886 28 79.3 0 A..........A..C..-.....A....T | C [606890] ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTTGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGCTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 616474-617480 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQKJ010000002.1 Pseudomonas aeruginosa strain ZYPA27 NODE_2_length_895743_cov_30.440838_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 616474 29 100.0 32 ............................. TCGACCGTTGACGAAGAGCGGCAGCGCGAACT 616535 29 100.0 32 ............................. GCCGGCGTAGCATGGGTGGATAGCGCTCTGGA 616596 29 100.0 33 ............................. TGGAAATCAGGCGTAACGGCGTGGTTTGCTGGG 616658 29 100.0 32 ............................. GGCATAGAGGCGCCCGCCGATAGTCGAACCAA 616719 29 100.0 32 ............................. TCTATGGCCTCACTCCAATTTCCGGCAGAAAC 616780 29 100.0 32 ............................. TTCACCACGGTCTGACCTGCTGCCAGCGTCTG 616841 29 100.0 32 ............................. CGGCTCATTGCGTTCGGGTGGACCGTCGAACA 616902 29 100.0 32 ............................. GAAGTCGCGCGGCGCATGGGTATCGCCCCTGG 616963 29 100.0 32 ............................. GAGTAAGCCATGTCTCGCTATCGTCGCGTGAA 617024 29 100.0 33 ............................. GCGCTGGGTAACCTACGCGACAACAGCGAGTTC 617086 29 100.0 32 ............................. AGTCTTCGTTTGCTGAGATCAAGGCGGCGATC 617147 29 96.6 32 ..............T.............. GAGTTCGAAAACGGCCATCACACATTCCTCCG 617208 29 100.0 32 ............................. GTCAAGTACGCGAACCTCACGACCGGCGAGGT 617269 29 100.0 32 ............................. TCAGGCGACTGCTTGATTTCATCGAAGGTCAG 617330 29 96.6 32 ....G........................ GCGGCACGCCTGGACGTGCTCCAGGACATCCG 617391 29 100.0 32 ............................. TTCTCGTTCTACAACAGCACGAACGGCGGGGC 617452 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.4 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTGGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGTCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCTGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 410929-410061 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQKJ010000001.1 Pseudomonas aeruginosa strain ZYPA27 NODE_1_length_904495_cov_31.112877_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 410928 28 96.4 32 .............C.............. AAAGAGCAGGGCGGTAAGCCCGAAAAGGTCTG 410868 28 96.4 32 .............C.............. ACATGGGAATGCTCTCCTGGCACGAAGAAACG 410808 28 96.4 32 .............C.............. GCCCGCTGGGGAAGCCGCAGTTATCCGGAGTA 410748 28 96.4 32 .............C.............. ATGCTCATTTCGCCACCTCGATTCCGGCTTGT 410688 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 410628 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 410568 28 100.0 32 ............................ ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 410508 28 100.0 32 ............................ TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 410448 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 410388 28 100.0 32 ............................ ATCAGGTACAGCACCAGGGCACCGAAGACGTT 410328 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 410268 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 410208 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 410148 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 410088 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCTGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGACAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //