Array 1 28815-30946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNVM010000005.1 Lactobacillus delbrueckii subsp. lactis strain FAM 12062 FAM12062-i1-1_scf5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 28815 33 100.0 35 ................................. GTCGCCCACTTGGGTCACTTGGACAAGCACCATGT 28883 33 100.0 35 ................................. GTTGAAGCAAACAATATCAATGCACAAAAGACCAG 28951 33 100.0 35 ................................. AAGCGATCTTGTCCGGTTGGTCAAAGGCAAGACAG 29019 33 100.0 35 ................................. ATCTAACCCAAAAGAAGGAGCGTCAGAAGAGATAA 29087 33 100.0 36 ................................. GACCAGGCTGTCCCAACATTTATCCGGCAAAAACGT 29156 33 100.0 37 ................................. TAGTTAATAGATGGCATCAGCGTGATGATCGCTTGCC 29226 33 100.0 37 ................................. ACAGTATCAAGGTCGTGGTTGGACACACACGTTTGCA 29296 33 100.0 36 ................................. TTATTGACAGTCAAGCAAAAGGTAAGAACGTTGCAA 29365 33 100.0 35 ................................. TCAAACAGGTATTAGGTGATAAGCCAGCAGATAAG 29433 33 100.0 33 ................................. CCACTGCTAAGACATTTAACAACTGTTCTTTAG 29499 33 100.0 34 ................................. AACGGAAGCAACCCGATACTGCCAGTAACGTCTT 29566 33 100.0 33 ................................. TGCAATGTAGGATTAAGCACTTGATCGCACAAG 29632 33 100.0 37 ................................. TCAAGGCCTTTGAGCCAGTCTCCCCAGTCAAAGCCGC 29702 33 100.0 35 ................................. TTATTGTGCGTGTACAAAGCCGCAAAGCCAGCGGC 29770 33 100.0 34 ................................. CAGATAGCCCGGCCTTGTCGAACGTCTCAGCCTG 29837 33 100.0 36 ................................. AGCGCATCGGTCATAGCTGATGCCAGGTCAGTCAAG 29906 33 100.0 35 ................................. AACGCTCCTACGGCGTAATCGGCGACCCGGAAAAG 29974 33 100.0 34 ................................. GGTGATAACCTCTGCGGCGTATTCCCGCTTTTGG 30041 33 100.0 35 ................................. TTCTGGCCACCTTGGCCAGCATGGATAACGGCGGT 30109 33 100.0 33 ................................. CCTGCAACTAAATCCTGTGTAAAAGCCGTGCTG 30175 33 100.0 33 ................................. ACTGACTGGTGAAGACGTCAACCGCTTGCGTAG 30241 33 100.0 35 ................................. TTCTCCCAATCGCGAAAGTTTGGCTATGACATCAT 30309 33 100.0 34 ................................. GCGATCGGTGGCACTCTAGTGGCGGCTGCTTTGG 30376 33 100.0 35 ................................. CCGCATAACTGGCAGACAGGTTATTTTATTGACAC 30444 33 100.0 35 ................................. AGTCGATCACTGAAGGCGACGTATCCGTATCCTTT 30512 33 100.0 34 ................................. AACTCCATTGCTGGCGGAGCTATGGTCGGCAACT 30579 33 100.0 35 ................................. ACAGGCATGGCTACGCAGTTCAAGACCATGGGTGA 30647 33 100.0 34 ................................. TTGCCCTTGATCGTCATGACCTTGGCCGTCTTCC 30714 33 100.0 34 ................................. ACTGCCGACCGCTGCCACGTAAACTGCGTCTTGA 30781 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 30847 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 30914 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ===================================== ================== 32 33 99.3 35 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTTACTAAATGTTGCG # Right flank : TATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTAGCGGGGTGCTTTTTAATATTTCGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAACAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAGTTGCCCTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCTCAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.40,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5362-8293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNVM010000027.1 Lactobacillus delbrueckii subsp. lactis strain FAM 12062 FAM12062-i1-1_scf27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 5362 35 75.0 39 .C.T.....C...G.G.-...G...T.T........ GCATAGTGCGGATTGTAAGTAGCGACAAGCTTTGTTGCA C [5375] 5437 35 80.6 35 C..-.T.C......T...................AT GTGCAAAGCAGAATGAGTCTCCGTAAGGAATAAAA C,G [5466,5469] 5509 36 94.4 36 ....C..C............................ GAAAATAAAAAAAGTTGCAAGCGAAAGCTTGCTAGA 5581 36 100.0 36 .................................... AGAAAGAGGTAATAAAAATGATTTCCGAAAAAACTA 5653 36 100.0 43 .................................... AATACGACAACACTTATAACTATTGCGGTTATCTTGATAACTA 5732 36 100.0 37 .................................... TATGATGAAGATTTTAGAAAAGAGATGGAAAATTTCA 5805 36 100.0 37 .................................... TTTTAGGAGGTAACAAAATGGAATTAGAAGAAGTTTT 5878 36 100.0 40 .................................... ATAATAATTGAAATGAAAGAGGTAAACAAAATGGAATCTA 5954 36 100.0 41 .................................... CAGTATCGCTCTGATTGTGAAGAATGGTTAGAGGACCTCGT 6031 36 100.0 41 .................................... GAAAATAAGGAATTGGTATTGTTGGCGGAAGAAGACCGGGA 6108 36 100.0 38 .................................... TCTTTGAGGATCAAACGCTCGTTTGTGAGGTATTCGTA 6182 36 100.0 37 .................................... GACAGAAAAAAACAAAAAGTTTTAAAGTTTTGCTTTT 6255 36 100.0 35 .................................... TGTGAGGACGATTGGCCGGCTATGGAATGGTTTAT 6326 36 100.0 37 .................................... AATTTTTGCTATTATTAAATATGTGCTGAGGCACGAG 6399 36 100.0 41 .................................... AACGGAGTGACATAGATAAGTGGGCCAAACAGTTTAAGGAG 6476 36 100.0 41 .................................... TTAGCTGATGCTGCTGAAAAAATTGCAAAGGATAAACAATG 6553 36 100.0 39 .................................... CAGTACTACTGGACGGTGGAAGACGGCCAGGTAGTTGAA 6628 36 100.0 37 .................................... TCTTCTCTGTGATTGGCTTTATTGCCGGCCGCTTTCC 6701 36 100.0 41 .................................... GGAGCTTCTGGCCGAAGACGAATTTTGGGATGAGTACTCCA 6778 36 100.0 42 .................................... GAGATCAAGAAGTTTATCACCATGAAAGAGTTCACTTACAGA 6856 36 100.0 40 .................................... AGAAAGAGAGAAAAGAAAATGAATGAATTAGTGATTTTAA 6932 36 100.0 38 .................................... ATGGAAGAAATGGAATACACACCAATGAATTACATCAT 7006 36 100.0 35 .................................... ACAGAAAAACGATGAACAAGTCCGCGTCTAGGTCA 7077 36 100.0 34 .................................... AGAACTTGAAGACGTAATTAGAAAAATCAAGAAG 7147 36 100.0 35 .................................... ATGCAAGGTTTTAAAATTGCTCAAAAGATTGGCTA 7218 36 100.0 38 .................................... ACAGAAAAGATATTGAATTAGATATTACTAGTGAACAA 7292 36 100.0 35 .................................... TAGCAAAAAAGTTGCGAAAGGAACAACACAACATG 7363 36 100.0 36 .................................... ACAAGGAAAACTATGATTTGTACCTTAACGGGTGGC 7435 36 100.0 40 .................................... AAAAAGCGCAATGAGTAAATTCATTTGGGATGGTTTCTGT 7511 36 100.0 39 .................................... TTGACGTTTCCAACTTTTACTAGAAAAAACGGGCTTAAA 7586 36 100.0 36 .................................... TTACAAAGTTAAGAAATGAGGTATTAAAAAATGGAA 7658 36 100.0 35 .................................... CTTGAAATGCTCAAGAAATTGTCGGAATTGTACAG 7729 36 100.0 45 .................................... AAGACAGGCCAAGACCCGGAAGTACTGGAGAAAGAAACGTTGGGA 7810 36 100.0 39 .................................... GTTGACTACTACGATGAACAAATGCGTAACCCAGGTTTA 7885 36 100.0 35 .................................... AAGCGTGCCGTTTTCTTTGTTTTTAACTAGAAATT 7956 36 100.0 40 .................................... ACTGGCAGAACTTATTGAACCTGCTAAGCCGGCTAAGAAG 8032 36 100.0 38 .................................... AAAAATGGATTTAAAAGATGTAATTAAAGAGATCACGA 8106 36 100.0 40 .................................... CGTGACGAAGTAATTAAGTATACGCTGGCTTACAAAGAAT 8182 36 100.0 40 .................................... AAAAGCCGCTACTACAACATAGTCAACGGCAACTGCGATT 8258 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 40 36 98.8 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : TGGCAAAAATCCGCACGCTGAAGCGTTTGATCGCCCGGCAGACTTGAACTAGATAAAGTAGCGATAATTGGATTAAACGGTTGGCCAGGATCTTATGGTTCAGCAAGTCATACAAGCCTTGGACCAGCTGCCCTTGAAAGTATGGTCCAGCGCAGCGACCATGCCGATATTGTAGATCAAGCCTGAAATAGTAACGACCACAAGAATTGGCGCTTCTTACCAGAAGTAGCTGCTCATTTTCTTGGGGTCGCGGGTATTTTCTGCTTCATCTCGCTGCCTCCTCTGACTGCAATTTTGCCCGCTTCTCTGCATCCGCTATCAGCATTTCCACCTTCATCATAGCACCGATTCTTCTTCAGTCTAGTCCATTTTGGACGGAATGAAGGAGGTTTTTTATACGAAAAAACGGCCAGCAACTGGCCGTTTGGCTTATGTCTCCTTTTAACGGAGATTGTGCATTGAAAATAGATTGATTAATAATATAGCTCTTTTCTTTAAAT # Right flank : CAGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGACACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //