Array 1 215500-214092 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFXH01000002.1 Acinetobacter baumannii 1391434 ab1391434.contig.1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 215499 28 100.0 32 ............................ TTGTGTGCCAAAAATAACTAATATTAGAGCGT 215439 28 100.0 32 ............................ ATATGGGATGAAGCCTTAGATTTCAATTTAAT 215379 28 100.0 32 ............................ TTAATTTTGATGGGTGAACCACATCCCAAAAA 215319 28 100.0 32 ............................ TTATACGATTGCCAAGAAGGGATTTAACGCCC 215259 28 100.0 32 ............................ TTTACCCACTTAACAACACCGTGCTTGTTTAC 215199 28 100.0 32 ............................ AAATATCGTTGCCCTCTATTACGCATCACTTC 215139 28 100.0 32 ............................ TACATCGGCAATTGATTTTCTCGGCTGGCTGA 215079 28 100.0 32 ............................ TTGTCAAAACCCCGTTGCATTTCCACTTTATC 215019 28 100.0 32 ............................ AGAAGCGCGTTAACATTCTTATGGAGGAGTTT 214959 28 100.0 32 ............................ CGCTGATTTAGATAAGAACGGGAATGTTCTTA 214899 28 100.0 32 ............................ GAAAAGAGTCTGTAGCAATCAATTCTAAAATG 214839 28 100.0 32 ............................ ATAGCAATTTCAGACCGCATAGGCTTAACTAC 214779 28 100.0 32 ............................ TGAATCAATTAGCTCACGAATGTTTTTATGAA 214719 28 100.0 32 ............................ ACACCGACACGCGTTTGAGCTAGCGTAACATC 214659 28 100.0 32 ............................ TTATATCGCTAAGATGCTTAACCAGCCACAAA 214599 28 100.0 32 ............................ TGCGCGAAATGGTGCGAAATGGCGGCATGTTT 214539 28 100.0 32 ............................ GGTTGTACAGGTCAATGGTGCAACGCCCGTTC 214479 28 100.0 32 ............................ ATTCAGTAGGGAAAGCTTCGCCGTATGGATTC 214419 28 100.0 32 ............................ AGACGCTACACGATCCTTATCTAAAGCCAATT 214359 28 100.0 32 ............................ TAGCGGAAAAAGTCTATGAGATCATGAAGGCC 214299 28 100.0 32 ............................ ATGAAGTGTTTAATTGGTACTGTGGCGAACCT 214239 28 100.0 32 ............................ CTTATGTCTCTCAATGGTGGTATTGATGATGT 214179 28 100.0 32 ............................ GAACCAAGATCAATCGTAGTGTTCGGGTTAAT 214119 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : CTTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGGAAAATGAAAGTATTGAAGGAGAGAGTTGCAACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTCAGAAGATTAGGTTATATTTTTTAAAAATGGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGTTTCTTCCAAAATTTAAGACGATGTATTTTGTCGTTAAAAGGTCGTATTAAACTGATTAAAGCTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGACATTCAGACTTTAACAATAAACTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGATATTCGTCTTGGCAAGCACCAATGACAATAGAAGGCTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACTCGACAAACTGCGGTAGCCGCTTACATTAATTTTGGTGTACGAAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGTTAGATGAATGGGTCAAAGTAAGTAGCTTATTGGCAGGGGCAGCAGGGGGCATGCATGATATTGGTAAGGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 220589-221997 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFXH01000002.1 Acinetobacter baumannii 1391434 ab1391434.contig.1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 220589 29 96.6 31 ............................A GGTAGTTTGGTTCCAATGGCCAGCATCAGTA 220649 29 100.0 31 ............................. GTAGTACTAGATTGGATTGCAAAACCTTTAG 220709 29 100.0 31 ............................. AAGGCTACTACTAGGCCGAACGTGAAAAGAA 220769 29 96.6 31 ............................C ACTGCGACCATTCATTTAGATCTGTTTTGCA 220829 29 100.0 31 ............................. ATGTGTAAATAGTCGAATGCCTTTAGTGATT 220889 29 96.6 31 ............................C ATCAGTGGGATATGCATTTGATACAAAGAAA 220949 29 96.6 31 ............................A ATAAGGGGAAAACTCATGGAAAACCAACTAA 221009 29 100.0 31 ............................. AACCGAGAATAAAAATGTCTGGATTAATTGC 221069 29 96.6 31 ............................A AGACGGCCCAAAGTTACCATGGCGATTTGTA 221129 29 96.6 31 ............................A ATTAGCCGAGATACCGCTGATAAATGGCTGC 221189 29 100.0 31 ............................. ATAAGCCAGATCGGATGTACTGGTACCATCC 221249 29 96.6 31 ............................C ACGCATGTCGGAAGCTCGGCTTTTTATCTAC 221309 29 96.6 31 ............................A CATGGGAGCTTTCATTCATATATGTCATTAG 221369 29 100.0 31 ............................. GTTTTGCTAATTTATCAATATCGATTTTCAC 221429 29 89.7 31 ...AC.......................A AGGTTCTTATGAATTGCACCACCCGTATTTC 221489 29 89.7 31 ...AC.......................A TTCTCATGACATTGTCAGTAGGCACACTCAT 221549 29 82.8 31 ...AC.......CC..............A CGTCTTCTAATGATGGACTTTAATCCAATAT 221609 29 79.3 31 A..GA.......TC..............A TCTCACTGAAGATATGACCATCACTTTCTTC 221669 29 82.8 31 ..CGC.......CC............... TTATAACCACCAGTTAAAGTATTGACTAAAA 221729 29 72.4 31 ...GC.G...A..C.AT...........A CAATCGGGGACGTGGTCAAAAAGATTATCAG 221789 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 221849 29 79.3 31 ...GC....T..TC..............G ACATGCGAGCTTTCATTTAAATGTGTCATCA 221909 29 89.7 30 ....G........C..............C AAGCTGATGCTTCCTTATGGTTACAGTCAG 221968 29 86.2 0 .G..C...................AT... | G [221972] ========== ====== ====== ====== ============================= =============================== ================== 24 29 92.4 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTCGACCTCGCTGATCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAACTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGATATATGTAGTAAAATCAAATAAAATCATATATTTAATCTAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATTTTGGGATGGCGTCAATTGAACTAAAAACACAAGAACATGATTTATATATGAATTTTTAATTAATAAAAATCATGTGATACATATAGTGATACAAATCTTCTTTGTATTACTTAATATACTACTCTTTACATACGGTAAGAAAATTCAGAAATCCTCTTATATAATCCTGATTTTCTCCAATTATTTCATTTTCAGGAGATAAAGTTAGGTAGTACCGACTAAGTTCATTTAAGATCGATTTAGCTTTTAACCATCTAGAAAAATCTCTAGATTTGGTAAAAGAATCCCAATGCATAAATGAAAGCTCAATAAACTTAGGATGACTTTCAGGAAACTTAGTTAAAAGAAATTCAAGTAGATCATCATTGTTATAGAAATTAGCATGAGAGATGTATTGAGCAATTTTTTCTTCATCAAATACAGTAGATAAATCTACTAAAGTAG # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-34] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //