Array 1 111844-108886 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCRA01000003.1 Salinibacter altiplanensis strain AN4 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 111843 28 100.0 33 ............................ TGAGATACCCAGACATCACCCAGCCGACGATTC 111782 28 100.0 33 ............................ TGTTTTATCAGTGTTCATGAGCATTCGATTTCA 111721 28 100.0 33 ............................ GCTCTCTCAAACGGGTGGAGCCTCCGTGAATTG 111660 28 100.0 33 ............................ CTCGCGTCTTCGGGGCCTCGCCCGACCGTTGTT 111599 28 100.0 33 ............................ CGTTAATGCTGGCCGCGTCCGCCGTCTCTTGGG 111538 28 100.0 33 ............................ TCGACGTGGACAAGGCAAAGTGGTGGCCTGTGG 111477 28 100.0 33 ............................ CCTGCGGACCAGCCGGGTGAACCAGCAGCTGCG 111416 28 100.0 33 ............................ CGACCACTCATTTTGCATCAATACACGGACTAC 111355 28 100.0 33 ............................ CCCGGCCGAGCCCTACGAGGAAATCTGTGAGGC 111294 28 100.0 33 ............................ TTGATGAGAGTCGCGTGGTCCTTTAAGTCGGCC 111233 28 100.0 33 ............................ TCAGACATTCGCACTTCGCTTGGTGATCCTGGG 111172 28 100.0 33 ............................ GAGGTCTCCGACCCCGCAATCCGGGACCTTATC 111111 28 100.0 33 ............................ CCCCGGAGTCTCCGGGGGCACTTGGGGAACCGT 111050 28 100.0 33 ............................ TTTCTTGGTTCGCATCTTTCCCTTTGCCCATCT 110989 28 100.0 33 ............................ TCCTCAAATCGGGAGGGCACGTCCACGATAAGT 110928 28 100.0 33 ............................ TTGCCTATTGGCCAGACTCTGCATTTCTGGTCC 110867 28 100.0 33 ............................ TTATCGAAGCCTCCGCCCAAAACTTCCACCTCG 110806 28 100.0 33 ............................ CGGTGGGCCCTTCCCATTTGCGCCGATATTCGC 110745 28 100.0 33 ............................ GCAGGTAGGCCACTACTCGGCGCGTGAGCTGCA 110684 28 100.0 33 ............................ CGCGTCGGCCGATGACACGAATGCCCAGATGGA 110623 28 100.0 33 ............................ CTCCAGGTCGACTCGGCCTTGGTCTCCAATCTC 110562 28 100.0 33 ............................ TCATCCCAGACTTGTTTTCAGCGACGGATCCCA 110501 28 100.0 33 ............................ TTCTTTCCGCCCTTACTTCGGTATTATCTTCCG 110440 28 100.0 33 ............................ TGTCTTCAAAGCCGGGGACCGGGCGCCACTTTT 110379 28 100.0 33 ............................ GCCACCGATGTTTCGAGATTCCGGCGTCCCTGT 110318 28 100.0 33 ............................ TCTCCGGAGACGTTCCTACTTGGGCGTTGGTCC 110257 28 100.0 33 ............................ CGAAGAGGTCTTCCATTGTCGGGGCGCCCGCTA 110196 28 100.0 33 ............................ TGTTTGACACCCGCAGCTCCTCGGTATCCCCCG 110135 28 100.0 33 ............................ TGAGCACTGTATGGAAGGGCGTCACATCACCGC 110074 28 100.0 33 ............................ GTCCTGGCTCACCGGGGAGGCCGCGGTTTTCGC 110013 28 100.0 33 ............................ CCAGTACCCACGACCGCCCGCCGCTTCGGGGTG 109952 28 100.0 33 ............................ TCACGGCGAAACGGAAAGAGATCCGCCGGGCAG 109891 28 100.0 33 ............................ CTTGAGGGGAGTGGCACGCTCCGCCCTCGGCTA 109830 28 100.0 33 ............................ TCCGGCACAAGGAGGTTAGACTCCAAGCTTTTG 109769 28 100.0 33 ............................ CTCATGGACCCGATCGACCTCTGGAGAGACCCA 109708 28 100.0 33 ............................ TATGGGCGAGGCTGATCCGGTAGAGTAGCAGTA 109647 28 100.0 33 ............................ TCAGCGGGGCAATCACGGCCGCTTTGAGAGCCA 109586 28 100.0 33 ............................ GTCCACCGCCGCCCCGAGCTTGTGCTGAGAAAG 109525 28 100.0 33 ............................ TTTTATCTCCGTCGGGTGCATGGACCCGGCGTC 109464 28 100.0 33 ............................ CGTGGTTTTCCGATACCGGAAAGCCCGATACCG 109403 28 100.0 33 ............................ CCGAACAGCGACCACTGGGTCCATTCGCTGTGG 109342 28 100.0 33 ............................ TCAGCCCAGAGGACATGCAGGCAGTGGAGGCAG 109281 28 100.0 33 ............................ CAGCCTGGAGTTCTCCGGCAACCTGGCCGTGGG 109220 28 100.0 33 ............................ CAGCCTGGAGTTCTCCGGCAACCTGGCCGTGGG 109159 28 100.0 33 ............................ CCTGGACCAGCTTCTGCTCGGCTTCGGCGTTAC 109098 28 100.0 33 ............................ CAGCCTGGAGTTCTCCGGCAACCTGGCCGTGGG 109037 28 100.0 33 ............................ CGGGATCGTCTTTGAGGCCGGCCAGACCGATGC 108976 28 100.0 33 ............................ TCAAGCCGGAGACGGTCCTTGGTCTTCAATGAG 108915 28 85.7 0 ..............G........T..TG | T,A [108891,108896] ========== ====== ====== ====== ============================ ================================= ================== 49 28 99.7 33 GGTAGCCCCGCACTCGCGGGGATAGACC # Left flank : TGTACGTGGCCCCCACCATGAAGAAGTCCGTCCGCGAGCGGGTGTGGCGCGTGATGATGGACTGGAACGAGCTGCTGCCCGACGACGCGGGCGTGGTCTTCTTCTGGCGCAACCCCGACGCCCCGTCCAAGCTGAGCATTCGCCTCTTGGGCTGGCCGAAGAAGGAATTTGTGGAGCACGAGGGCCTGTGGCTCACGCACCGCGACCTGACGGAGGCGCACGACGTGGAAGAGCTGCTGGAGCAGGGCGAGGTGGAGGAGCCGTCCATCGACGAGGACGACCCGACGCTGCCGATGCTGGAGGCGGTCGAGGCTCCGTGACGACCCCCGATTCGTTCCTTGACATTGCGATTCTTGAGAATGCCGCCTATGCTTGCCCACGGCGGGCAAGGCCGTGGCACAGCGCAGTTTTGATTCTCCCTGCGACAGACTGTCGCCTTTTTGGCGCGATACACGGAGCGAAGGGCCCGTAGCGCCCTGGTCCTGACAAACTGTAGCAGG # Right flank : CGAGCACACCCATTCTCGGGGCGGGTGCGGGCACCGGCATTTCCACCAAGTTTGCCGAGCGAGGGGGCATCGTCCGGGACGGCCGACGACGGCAGCGAGCACAGACGGTGTGTCTACGCTCCGGCGTCCGGACTATGCCTCGCCCAGCGCCGCGGTCACCTCATCGGCCGCCTCCTTCAGCACCACCGCCGACCGGAGCGACAGGTCGCTCTCATCGAGGAGCCGCTTCCCCTCCACGGCGTTGGTGCCCTGCAGACGCACGATCAGGGGCACGCTGATGTCAAGGTTCTTGGCCGCCTCGAGGACGCCCTGGGCCACGCGGTCGCAGCGCACAATGCCGCCGAAGATGTTGAGGAGGACAGCGTCCACGTTTGGGTCCTCCAGGATAATGCGGAAGCCCGCCTCCACCGTCTCGGCGCTCGCCGCCCCGCCCACGTCGAGAAAGTTGGCAGGCTCCCCACCGGCCAGTTTGATGATGTCCATCGTCGCCATGGCCAGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTAGCCCCGCACTCGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 131374-129881 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCRA01000003.1 Salinibacter altiplanensis strain AN4 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 131373 28 100.0 33 ............................ CCATGCGCACGGTGCGGCGCGTATGCCAGATGG 131312 28 100.0 33 ............................ GAAGGCAGGGGCACCTTTTTGAGCCGCAGGAAA 131251 28 100.0 33 ............................ TCAGAAATGCTTGTGGCCCTAGCCCAGGTCACG 131190 28 100.0 33 ............................ TCTACCGAATCACAAGCTAACCCATGCCCCAAG 131129 28 100.0 33 ............................ GTTGGCTGGTGCCGTCTACGACGCCTTGGTTCC 131068 28 100.0 33 ............................ TTCGGACCGATCACCACGCCGGATGTCGACTTC 131007 28 100.0 33 ............................ TCTAAGTAGCACTGCCCGCCCCTGAGTCATGGA 130946 28 100.0 33 ............................ CTTACTTGTGGGGTTGTTAACCTCGGCATTGAC 130885 28 100.0 33 ............................ TCAGCGCAGACGAGTTCGGCGTCTGGGGCGAAG 130824 28 100.0 33 ............................ CTGAGCCTTTTTAGGTTTCGGCTTGTTTCTGCA 130763 28 100.0 34 ............................ CTGCTGGGTGGTAGCGGCGAAGCTGGCCTTTCAA 130701 28 100.0 33 ............................ CAGCACTTCCTCTGACAAGGCGCTCTCTGACAA 130640 28 100.0 33 ............................ TCGAGGCGGAGGTGGAGAGCTTCCGGGAGAACA 130579 28 100.0 33 ............................ CGTTTTGCTGTTGCGCTGTCATCGTGAGTCGGA 130518 28 100.0 33 ............................ CGATTCGGTCCGGACAACTTCGGTCCAATCTTC 130457 28 100.0 33 ............................ CCGGCTCAACACGATCTGCCTCACTGTATCCAT 130396 28 100.0 33 ............................ GTCCTTGACCTGGGACAGCATTTCCTTCTTCGG 130335 28 100.0 33 ............................ GCAGGTCGAAGCCCTCGCCGCTGAGGCCGACGG 130274 28 100.0 33 ............................ TCGTGCTTCCGTCGTTCGCTCGTACCTCCTTGG 130213 28 100.0 33 ............................ CTGGCCACCTCTGCATCCCGCGTTTCCTTGATC 130152 28 100.0 33 ............................ CTCCGGATCATTGGCGTCCTCTCCAGCAGTCTC 130091 28 100.0 33 ............................ TCCCGGGAAGAATGGTTCGACCGGGTGTATGAA 130030 28 100.0 33 ............................ CTGCTGCCCCGAAAGGCCGCCGCCAAATGAGCC 129969 28 100.0 33 ............................ GAAGACCCGCCAGTCTGCCGGCGTGCTACTGGT 129908 28 92.9 0 .......................C..T. | ========== ====== ====== ====== ============================ ================================== ================== 25 28 99.7 33 GGTAACTCCGCACACGCGGAGATAGACC # Left flank : CGAACGCGGACCGCACTTCGTGAGCCCTGTGCGTGCGCACCCTTCGTGGAGTCGACGTCCCGACGATCCCTGCACGGGCGACAGGAACCCATCGGCAGGCCTCTCGCGGGACCACACAGATGCATCGAGGCATTCCAGAAACAGCCCTGGTGCGTCCTGTCTCAAAGCTGATCGCAGGCTCTCGCCTGGACGTGCACAAGTCACGTTGCGGGTCCGTGCGGGGCGGGTTGCCCCACCAGGCATCTTCTGGCTTCGTCCCGAAAGAGAAGTCCTCAAGCAGACCGGGGAGTGTCCACAGAAAGAGTGCGAAAGGCTCAGTCCCACGCGGTATCAAAAGGCCCGTGAGGCTCAACGCAGCGAATCACGGTCAAGCCAGAAGGGCCCGCGAACCGCTCGGGGACGGGGACGAAACAGGTCCCCTGCCAAAATGGCTCACACACACCTTGTCTCGTACCGCAATTTGCATTATTCCCTACCCAGTTGCGACATATTGTAGCAGG # Right flank : AATCGAAGGAGAACGGCGTTTTGCTCCGAACCAATCCCCAGTGATCCTCGCCAATCTCCGATGGGCCTGCCAATTCCTCGCCAATGAGCCAGTGGACGGACCGTCCCCTCCGCACAGCGTCGCTGGTCTTCTTCGACCTGGAGACGACCGCCCTGCGCCCGGACCGCGGCGGGCGCATCTGCGAGATGGCCGTGGTGGACCCGCAGGGCGTCCGGTTCGACTGGTGCAGCGACGAGGCCCCGCCCCGCGACGACGTCGTAGCAACGCAGCTGCCCCGTCTCCTCAATCACCTCGAAGCGGGCATCGTCGTGGGGCACAACCTGGAGTTCGATTTCCGCTTCCTCACCTACGAGGCCGAGCGCCTCGGCTGTGGCGGCCTCGACCTCCGCTTCGCCGACACACTGGGGTTGGCCCGGGCGCTCCTCAACGCCCCGGACGACTACCAGCTCGGAACCCTGCTCGGCCATTTCGACGCGGCCCCGAACGAGGAGCTGCACACG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTAACTCCGCACACGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //