Array 1 107365-106726 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIDE01000001.1 Escherichia coli strain 48-I79-A entry1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 107364 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 107303 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 107242 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 107181 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 107120 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 107059 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 106998 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 106937 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 106876 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 106815 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 106754 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124420-122866 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIDE01000001.1 Escherichia coli strain 48-I79-A entry1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124419 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 124358 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 124297 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 124236 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 124175 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 124114 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 124053 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 123992 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 123931 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 123870 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 123809 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 123748 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 123687 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 123626 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 123565 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 123504 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 123443 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 123382 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 123321 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 123260 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 123199 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 123138 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 123077 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 123016 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 122955 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 122894 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //