Array 1 77909-79192 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJVG01000014.1 Natrinema sp. J7-1 Contig039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 77909 30 100.0 35 .............................. AACAGATGCACAGAACCGGGAAAGTGAGTGACACC 77974 30 100.0 36 .............................. TGCTACTGTCACGCCGACTGACAAAGTTTTAAGTCC 78040 30 100.0 36 .............................. GTGGTCCCAACAGTCGGCCACAGCTCCGAGGAACCC 78106 30 100.0 35 .............................. CAGACCGAGCGGGCCGGTCTCGAGACCGCACTCGA 78171 30 100.0 34 .............................. TCGAGTGAGTCACCGCAGCGATCGCATGATCCGT 78235 30 100.0 35 .............................. GAAGTCGGATGGAGGGGAGAGTCGGCGTCGGTCTC 78300 30 100.0 36 .............................. TCCGGCATGAACGCGAACCTCGGACCGCTACTCCGG 78366 30 100.0 38 .............................. GTCGTCATCCTCGTCGCTGTCGTCGGCCTTGGAGATGA 78434 30 100.0 36 .............................. GAGGGAAATCGAATCGGGATCGATCCCATCCGGGAG 78500 30 100.0 38 .............................. TTTTCCATCCGGCTGCGTGGCGTCGCGAGCGATTCGGC 78568 30 100.0 37 .............................. GACTGCCGCTTTGCGATTTGGCTGACGCGCTCGTCCG 78635 30 100.0 36 .............................. TGAACCGTCCGCGTCACCCTCGCGCTCGAGCATGGC 78701 30 100.0 36 .............................. TCGGACGTGTTGCTTGCGTAGTCCCATCTACACACG 78767 30 100.0 37 .............................. GACTGCCGCTTTGCGATTTGGCTGACGCGCTCGTCCG 78834 30 100.0 37 .............................. GACGTTGAGGAAGTCCTTGATACGCCCGGCGATGAAA 78901 30 100.0 36 .............................. CATCCAGCGGTCGACTTTGTCGTGCATCCGGGCGAT 78967 30 100.0 35 .............................. CTCCGACTCCGCCGCCTCGATAGAAGCACGCACTT 79032 30 96.7 36 .............................G ATGAATATGGGGACTCGAGAGACTCACCCTGATCGC 79098 30 93.3 35 ..........G..................G GCCGACGAGTTCGAGGCGTTCGTCGACGCCGGCGA 79163 30 96.7 0 ..........G................... | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 99.3 36 GTTTCAGACGAACCCTTGTGGGGTCGAAGC # Left flank : GGTGATCCGACTTAATGACAAGCAGTATTGGCCGTACGCTGCGGTCGACCCTGAGATAAACAAATTATTCTATACAATGCTTGAGCCAACGACAACGAAGGTCCTCGCCCATTCGTTTCTGACTGAACTCTCTGAGAAACACGACATCGATGATGCCGTATTTTTCGTCGATGGATCGCATTCGTTACAAGATGCGTGTCAGCGCAACGGCTTCGATTTCAGATACGAGAAACATGGAAATCGGAATGCTGTCAAAAGCATCTTTAAATTGACGGGTAGCAGAACTGTATAATTTCCAAACTGTTTTAGCAACGCCGCAGCAGAAACCGACGACAAGTGGATCAGATCGTTCAGCTTCGCATGGAATCAGCTTATCTGAATACTACCGAGTGAGGGCAGCTACTCATCGACCCCCGGGGGTAGACGGGCTACTGGAGGGCGACGGAAGGACTTTATTGAGAGCGTGCTATACAGAGGCTGTAGCCCAGAAATCAGGCATG # Right flank : CGGGCCCGAAGAACGAGCCTGGTGTCTCATACGCGAAGTGTTTCAGATGGCCCCTTCTTTTACAATAGCTGAAAGGGTTAGCACACCCCCAGAAAAAGCAGCCCCATCACGACAAATGTGAGAAACGTCTAATCAGAAGAGAGGGCATCGCCACCTCCGATCGACACGTTTCCTACGGGCGTATCAAGCTTGACATCTGCTTCGAAATTCGCAATAACTACTGCTGCTGCAAGAAACTCTACGAACTTTTGGTTCCGATGAAACAACGCCTCACTCATTACTAAATAGCTTAGGCACAGACCGTCTCGCATATCCGAAGAACAGTAATTCAACAGCAAAAAAGAGGGCAAATGAGACAGTCCCTGCGATCAATGAGAGAGCAAACCCAACAGCAGCTACACCAGTCATCGCGGTTACTATAGCCCTGAAGATAGACTCCAGAATCTCGAGTTTCACCGGGTAAGTGGCAGCTGTGTCGGTTACCATCTCTTGTTCTGTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTCGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.50,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 209497-209787 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJVG01000001.1 Natrinema sp. J7-1 Contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 209497 30 100.0 34 .............................. GAGATCGTCGACGAGGTCCTCGAGATCGGGATTC 209561 30 100.0 35 .............................. GACCAAGACCGACTCGGTCGAGTTGTCGATCGTGA 209626 30 100.0 36 .............................. GACGAGTTGCTTCCGCATCGCGACCGCGTTCAGGAG 209692 30 93.3 36 .......C........G............. AGTGGTAGAAGTACGTTTCAGGCATAATTTGGGCCT 209758 30 93.3 0 .......C........G............. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 97.3 36 GTTTCAGAAGGACCCTTGTAGGGTTGAAGC # Left flank : GCCCCGAACCTGGCCCCGACCGCGGCGGCCTCGTCGGCTTCAACCTCGAGGGCGTCCACGCCCACGACCTCGCCTCGATCATGAACGACCACGCGGTCGCGATCCGCGCGGGCGACCACTGTACCCAGCCGCTCCACGACAAACTGGGCGTCGCGGCCTCGGCTCGCGCCTCGTTCTACGTCTACAACACGAAAGCGGAGATCGACGACCTGGTCGCGGCGATCGACAACGCGCGGCAGTTGTTCGCGTAAGCGAACGCTGACCGCGAGACACGACACGTTCACTGGCGCTCGAGGGCCGTCTCAGCAAGCACCGCGAGCCAAGGTTCGAAGTGGAGTTACCGCTTCGGAGGGATGAGGGAACTGTTCGCGTCCCCACCGCTCGTCTCGGAATTATGGAACGTTCGTCGACCCCCGGGAGGTATTCCAGAAGTAACGGTCGACGAAACGAGTGCCGTTAATCCAAGCGTATTAGATACTGTAGGACCGATATGAAGCATG # Right flank : CAAGGTCTCTCCGGTCAGGCACGTCGGGACCCCTCACGTGCGACGAGGCGACTCGAGCAACGACAAAAAAACGAGTGCTCGGCGGCCCGTTATTCGCGCTCGAGGCTGCCGGGCGGGACGGAACAGCCACAGGCGGAGGCGGGGGCGTCACTGGGACCGGTGACGGTCACGACCCAGACGGGACGGCCGCAGGCGGGGCAGTCGGAAAGCGACCAGTCGGTCGCGTCAGCCGCCTCATCGGCCGGCTCCGTCCTCGTACTGGCCGGATCGACCCGCTCGTCGTGACCGGTCATCGCGACCGCCGTGGCCGCTGCGGCCGGTCCCGAGCATCGGGCGCTGTCGCTGGTCGGTGGTGTTGATTCCATCGTCGTGCGGGACGTTTATATCACGGTAGAATGTACGCAATCATGCTTGCAACTTCCTCGGTGGGGATTGGAAGCCAGTCTCGGGTGCTCTGACACCCGGGGCATTATCGATACGTGACCCCTCCGATCGCGCGT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGACCCTTGTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 130005-132393 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJVG01000005.1 Natrinema sp. J7-1 Contig006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 130005 30 100.0 34 .............................. CAGGCGTGGCGCGTTCGCAAGCGAGCTGGGCTCG 130069 30 100.0 34 .............................. GTGAGCCATCCGAGCACCAAGACCCCCATCGAGA 130133 30 100.0 35 .............................. TCGCTCCAGATTTCGGGAGCGACATAGAGTTTCCG 130198 30 100.0 37 .............................. GACATACGCCTGCTCGTGTCCTTCCGGTTTGTCGTCG 130265 30 100.0 37 .............................. CCGAACCGCTCGCGCTGGCGCTGGCTGTGGCTCATGG 130332 30 100.0 34 .............................. TCCTCGCGGTACGCGGCCAGGTGAGCCGCCGCGA 130396 30 100.0 36 .............................. TGTACCAGCAGTACCCGGCTGTCTCGACCCACGGCG 130462 30 100.0 36 .............................. TCGAGGGCCTCGCGGGCGGTGTGGCCGCCCTCTCCG 130528 30 100.0 35 .............................. TGGCCGTCTGCGCCAGTCCCCGAGGCGTTCGTCGA 130593 30 100.0 35 .............................. ATTGATCGGACCTCCGGGTTACTTGTAGGCAATCA 130658 30 100.0 35 .............................. GAATCCTCGAGGATCGGCGGCCAGCTGGCTGAACA 130723 30 100.0 35 .............................. GCAGACTACATCCTCGCCTGGCGGTTCCTCGACGC 130788 30 100.0 37 .............................. GGTTCGAGCTCCGGGTTGGTAGGGTCCTCGAGGTCAT 130855 30 100.0 36 .............................. GCCCTTCGAGAGTAGACCAGTCACGCTTGATTTGAC 130921 30 100.0 34 .............................. ATCGATGTCACCCTCGCGATCAAGAGTCGAATTG 130985 30 100.0 33 .............................. ACGTCGTCACCGCCGACGGGACGAACACGGTCG 131048 30 100.0 35 .............................. GTGCGTCATGATCTAGCTGCGTACGGGGCCACCCC 131113 30 100.0 35 .............................. CGCTGCGCCGCCGCCACCGCCACCACCTTCTCCGA 131178 30 100.0 35 .............................. GCGTTAGACTCCTCGACGCTGGTAAAAGTCTACGG 131243 30 100.0 35 .............................. AGAATGTATGACTCCTACCCGATATCGGAGGCTAT 131308 30 100.0 36 .............................. AGGAGACGGAGAACGCCTCTACTTTCGCGGAGACTC 131374 30 100.0 37 .............................. CCGGGAAACAGACGCATGTCACCGGATGAAAGAGGAA 131441 30 100.0 35 .............................. CTCGACAGGAACCCCTCGTAAACAACGATATACAG 131506 30 100.0 35 .............................. ACGGTAAGCTACAGGAGGGAAAAGAGAACGTCCCA 131571 30 100.0 35 .............................. GGAGTCTCCCGGACGAGTATCAGGAAGGGCTACAA 131636 30 100.0 36 .............................. AGACACAGACATGGGAGACGAAACCCCCGAAGGCGA 131702 30 100.0 36 .............................. ACAGGTCGAGTCAATTTTATCGCCATTCGGAAATCC 131768 30 100.0 33 .............................. CGGCTATCATCACTTCGCTGTCCGACTGACCGG 131831 30 100.0 37 .............................. GCGAACGATACGTCGCCCAACTCGAGGTGTCAGGCAC 131898 30 100.0 36 .............................. GATCACACCAAACGTGAATTGGACGCGGTCACGCTG 131964 30 100.0 36 .............................. TGTCTGTGGGTACTGCGGTGCGCAGGCCGAGCTTGC 132030 30 100.0 37 .............................. CGCTGTGGCGTCGCCGCGGATGTGCAACGACGCGATC 132097 30 100.0 37 .............................. TACGAGCAGGATGATGAGCAGGATGACGAATAGACGA 132164 30 100.0 37 .............................. TGCCCCGACTGCGAAACGTGGGTCGGATGGAAGCGCG 132231 30 100.0 37 .............................. GAGCAGATCAATCAGCAGGCCCAGACCGTCCAAGACA 132298 30 100.0 36 .............................. CTGGCGCGGTGCGTCGGGAGAACGGTATCGACCTGA 132364 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ===================================== ================== 37 30 99.9 36 GTTACAGACGGACCCTTGTGGGGTCGAAGC # Left flank : TCGACCATCCGGACTTAGGAAAAAAGGTAAGCTACCAGTATCTCCTCCGTGTCGAAGCGTACAAACTGAAAAAACATCTCCTGACCGGCGAGGAATACGTCCCGTTCCGACGGTGGTGGTGAGTGTGGTCTACATCGTTGTGGTCTACGACATGGAAGCCGACCGGACCCACAAGATGCTGAAGTTCCTTCGGAGATATCTCACACACGTCCAAAACTCCGTGCTCGAGGGGGACGTGACTGAGGGCGACCTCGAAAAGATCCGATCCGGCGTCAATGAAGTGCTCAAACCCGGAGAGTCGACGATTATCTACCGCGTCTCCTCTGAGAAGATGGTCGAGAGAACCGTCTTTGGTGACGATCCTGCTGCCGATGATCAGTTCCTCTAACCGTCCCCGGTTGTTTCATCGACCCCAGGGGGTTCAGAGGTTATCGAGGGTCGACGGAAACGATGAAGTGTGAACGGCCAATAGAGCTGTTTACGTGGTCTGACTGGCCATG # Right flank : ACTCTATAAGAAGGAAAATAGGAACAGATTTGCGGTCAACTCTACTCGTGCCGATCAATTGACGATCTCCACGACACCCGACCAACTTGGCCGGTCAGAGACGTTGGAATATTTGATCTCTTCAGAACCTAATACGGCCATTTCAGTCGGTTGAAAAGACTGTTTAGCCGATGTAAGGGGAACAGTATCCGATACCAAAATCCGGTTTCGACTGATGTTTGGGTAAACCCCAAACAACTGTCGGTTCCATTGGAACCATCCCCGACTATTTCGACCCGGCTCAATAGATGATAAACCGCTGTTCATACACAAACTGGAGACGGCCGTTTCGCCCGGCGAAAAAAGACGGTTTAGCTGATAAAAGGGACGACAGCGTTCAACACCAAAGGAGATCTCGGCCGACATTCGGGAAGCCCCGCCCAACTACCAGTATCAGTGGGTTAGTCCCGACTACGTCGAGGAGTTCCTAATCGCCCTCCGTGATGGAAACGTTGGCCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGGACCCTTGTGGGGTCGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //