Array 1 7512-8364 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGMZ01000041.1 Methanospirillum stamsii strain Pt1 DSM26304_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 7512 37 100.0 37 ..................................... ATCATTTTGTATCTGTAATCATCAGGTAACATATCAC 7586 37 100.0 37 ..................................... GTAATCATCAGGTAACATATCACTATGGCAGTGATGA 7660 37 100.0 36 ..................................... GGCACAAATGGCTTTTGAACGTCCATTTTTGTAGCG 7733 37 100.0 36 ..................................... GTTAGGTTGGGTCTATGACCTGACAGTTTTTTGGAA 7806 37 100.0 36 ..................................... TTTCTGATATTGCATCCATACCACTTTTATTCAATT 7879 37 100.0 36 ..................................... GCAAAATACCGACCATAGAACAATCCTAGCCTACTA 7952 37 100.0 40 ..................................... ATCCCGGCCTTATCAATCCACCCCAGCCCTATTCCGTCCG 8029 37 100.0 36 ..................................... ATGTTACTTCACATTTCCATGGTTCATGTGCAATAA 8102 37 100.0 37 ..................................... TTCGATACATTGAAGGATGAATTAATGGATATGCTAT 8176 37 100.0 41 ..................................... CACATTTTGTTTTACCTCCTTTAGAGTAGTGAGATTTTCAG 8254 37 100.0 38 ..................................... CTCAGAACCATATCGACTGGTTGCGTGATGTACGTCGG 8329 36 78.4 0 ..........A......-C..........G..AT.CT | ========== ====== ====== ====== ===================================== ========================================= ================== 12 37 98.2 37 CTTGCATAAGGGTTCCATAAAAAACAAGGACTGCAAC # Left flank : ATATTCTGAATGGTATCTGAAACATCCATCCTGGAAGGAATGCACTGGAATCTGGGATGAGGTTTCAGGTATACGAAATGAGATTGCCCATTGCGGAATGAATGAGAAGAAACAGAAGACAAAACGGCTTGAAGCCCGGGTACTTGGAATGACCGGATCACTTCAGAGATATTTTGAGTTTTTAGTTCCCTGATTCTATTTTTTTATAGGTTTTTAAGAGATATAGGTGAAACCGGGTATCTGGTATAAGAAATACTGGTGAGGTTTCGTCCGGATAATTATTAAACAAAATCTCTCTTTCAGGGAGATTATGATGGCTACCATGTACCTGGTGATAATGGTTTTGATTATCCGGCCATGGATTTCAAAAGAGAATGATTATATCCATTTGCGACGACGTTATAAAGGAGGTACGGAAATACCCCTCGTCGATCTGATAAAGGTATCGGGAAGATGGGGGTAAGAGTGCTCCGTTCGTTAAAAGGGCAAAATTTTTGGCC # Right flank : TTAAATAACATAAAACAAAAATTTTAAAAAATTTTCGGATTATTACAGTTAAAAAAATACGATATCTGTTGTTTGGAGAGTTATAAAACAAATTTCAATGAGAAATTTATACATATTTGTATAACACAAGTATGTTAAGGAATTACTAGTAATAAGAGAGTTACATGAATCTCTTTGGAACCGGGACAAATATCATGGTTTCATGATTCTCATATATTATTTTATATCACACAAAACAATGAGATAAGAAAGATGTCTGAAGTATTTAAAGAAGGGGTGATTACTTTTGATTCTGCATCCAAAAAAGAGATATTATCATTTTTTGGGAAAACTTTGGATGAAGAAGGGTACCTTGTGGAATCTGATAATCTCTCACAAAGAGTTATTACTCCCGACTATGAAGAAATCAAATTAAGTGAATTTGCAGGAATCCGGAAAGGTTCTGAGATATATATAAAATCTGATCTCCCCTCTTTGATAATGCTCATTGACAGTTTACA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCATAAGGGTTCCATAAAAAACAAGGACTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 19746-18664 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGMZ01000041.1 Methanospirillum stamsii strain Pt1 DSM26304_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 19745 36 89.2 38 ....G............CC-................. TAGGTGAACAATAAATGTCTAATTTAATCAAAGTTGAA AA,GT [19735,19740] 19667 37 100.0 38 ..................................... ATGAAAAAATGTCTAGTTATCAGGAACACTATACATTA 19592 37 100.0 36 ..................................... ATGAACTAAAAATTCTATTGTATTAACAACGATATT 19519 37 100.0 40 ..................................... TGTATGGCAACGATAAGGATAGTGCCCGGCTTGTTATGGG 19442 37 100.0 38 ..................................... TCTTTAAACTCATTTAATGATCTCTGAACACCTTTTGG 19367 37 100.0 37 ..................................... ACAGACCTACAGCGTTAACCCGTATGGGTAAACATAT 19293 37 100.0 36 ..................................... AATGGATAGCCACCTCTGATTATTAATTTACCATTA 19220 37 100.0 37 ..................................... ATATTTACTTCGAAATAATCGGTCATGATATCGTCTT 19146 37 100.0 37 ..................................... ATCGAATATGATGAGATAGTCGCTCAGGTGAGAAATG 19072 37 100.0 38 ..................................... AATGTAGCTCCTAAGGTAATCACTGAAGCCGTTAAAGT 18997 37 100.0 37 ..................................... ATAATCACCCATTTGACAATAATCATGCATAATATAA 18923 37 100.0 36 ..................................... ACAAAACCAAAAGGTAGATCGCCACGAGGTCTACGT 18850 37 100.0 38 ..................................... TACTCCCATTCCAGTGAGTGATTCACATGTTACTCGTG 18775 37 100.0 38 ..................................... TTAACCATTAACAATACAAATTATCCTTAAATCAATAA 18700 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 99.3 38 GTTGCAGTCCTTGTTTTTTGTGGAACCCTTATGCAAG # Left flank : GGGGAGTGAAAAACCTTCTTTAAAGCACTCAAGTTCACAAAGGGTGAATAAACTCCGAATTATTGGATGGGGGATTATCGATCCTCTTATGCATTTTTAATCAGGAAAATTGAATGAGATTCAATCACGAAAACGCTTACTTTTCGTTAATCGTACAGCTTTTTTACCATAGACTTTTTCTTATATCCCAATATACCAGACTATTATTGATTTCATACATAAGTGGATTTATCCTGGCATAACGACGAATATTTTTATCTGCAAGGACTTTTTTTATTAATTCATCAAATTCTTTTTCAGAAATATCCAAAATTTCTATCATTTCAGTATTATTTTCTAATTTTTCTAATACTGTTGAGATGAGAGATTGAATTTTTTCGTCTGACATAATGAGACCGTCTCTTTATTTCTTCTTTTGTAAAGTCAACATCCGGTAAAGAAGTGGATGATGTGAATCCTGAATGCAAGTGATTTAGAGAAACTTATTATCCCGAGTTTTC # Right flank : GGCCAAAAATTTCGCCCTTTTGACAAACGAAGCACACCTAACCCCATCTTTCCGATACCTTTATCAGATCGACGAGGGGGGTTTCCGTACCTCCTTTATAACCTCGTCGCAAAATTATATAATCATTCCTTTTCTAAATTCGAACCCGGAACTCGTATTTTCAGAACCACCATTCAATTCAGACCCCCAATCTCTTCATTCCGGATATCAGATCCCGGATTCACTCTCCGGATAGTACCAAATCCCTGTGAAACACCCTTTCCAATCCCGATATACTCAGGCATCTGAAAATTTACCATAAATGACCCGGAAAAACCGGTCATATCAACGCCCTTGTATCTGATGGGAACCTGTTCAAGCATCGTCCGGACAGAAAGCCTCTCTTCAATTACAATGCCAAGTCCTTTTGCCATGCTCAGAATATTCCCGATAAGAATACGATTCAAAAACATCTTCTTATCTTTCCAGTCAGATAATTCACGAAACTTCCGGTAATTATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTCCTTGTTTTTTGTGGAACCCTTATGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //