Array 1 230680-230388 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKI01000022.1 Akkermansia muciniphila strain GP10 scaf-22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 230679 31 100.0 34 ............................... CAGCTCCTTGATTCTGGTCTCCTGTTGGGCGACC 230614 31 100.0 34 ............................... AGAGTTAAACCCCTTCAGGCCGCCGGAACCCTTG 230549 31 100.0 34 ............................... TCGTCAACTCCGCTCTTTGTAACGCGGCCAAGGA 230484 31 100.0 34 ............................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 230419 31 87.1 0 .....................A..A....TA | G [230401] ========== ====== ====== ====== =============================== ================================== ================== 5 31 97.4 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGAATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCACGCCGCCCGGGAGGCCTGTTGTTTTTGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACATGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGCAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGACCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTTCAGGCC # Right flank : GTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTATGATAAATGGTTATTTATTGAATATTCTTTTAAGGAGGATTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGACCCGGACCGGGC # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 207752-208821 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKI01000002.1 Akkermansia muciniphila strain GP10 scaf-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 207752 31 100.0 34 ............................... ATTGGTATCCTCCGGCATGTTCTTGACGTAGATT 207817 31 100.0 34 ............................... CTGTCTGCAACGGGTCTTCCGGGTTAAGACGGAT 207882 31 100.0 34 ............................... AGAGTCCAAAAGATACTGTTTTGCGCGGCTGGAA 207947 31 100.0 34 ............................... CTTAGTAGTTCCTCAGCCTTGGATTGCATTGCTA 208012 31 100.0 34 ............................... TAATAGTTGAATGTTAGTGTGTTGTTATTCTCCG 208077 31 100.0 34 ............................... CATCTGGGCGGCGGATTGTTCGTGCATGACGGCA 208142 31 100.0 34 ............................... CTCAACTTCACGCGCTATGTGGTAATCCTCCATA 208207 31 100.0 34 ............................... CAATAATTTTTCAAATCTGTAGCATATATCCTTC 208272 31 100.0 34 ............................... TGACGGCAAGAAGCTGAATAGCCTTTGCCGTCTC 208337 31 100.0 34 ............................... GATGGACATGCCGATCTTTTCCTCGATTTCGGTT 208402 31 100.0 34 ............................... TCTAACTCCTTTTCAAGGTTAGCACAAAGCAAGA 208467 31 100.0 33 ............................... AACCCTTCTTGCCTGCGGCTTGCAGGGCTTCCA 208531 31 100.0 34 ............................... CGTTGGACAGTGACGCATGGTTATTTTCCGGGAA 208596 31 100.0 34 ............................... TAAAGACGTAGTACATTTTTTCGCCCAGGGCCAG 208661 31 100.0 34 ............................... GCTTCGTGGAAGCCTGCTGAAATACGGAAAACAT 208726 31 100.0 34 ............................... TATATTTTTTCGTAAGAATCTCTAACTTGTTCAC 208791 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================== ================== 17 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CCTTGGAGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACCTGCTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGACAGCCGCCGATGCCGGAAAACACTTCAAGGCCACTCCATTAATATGGAGCGGCCTTTTGTTTTTGGAATGGCAGAGAAAAAAAGTTGCTGGACGATAGGCCGCTGGCCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATTGCTGAACTGATAAACTGTTTGCGCCAACCTCAAGCTCACAGAAATTCCCGGGGAGATCGGCGATTTCTGTAAGTCCTTGAAATCAGTAGATTGACATTCTCTCCAATAAAATATAAGGGGGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTGAACGCATATCCCCTTCCGCC # Right flank : CCTGTGTCAGGGTCCGTGATGGTTGAGGGATGACAGGATAGTTGATATAAGTTGATTTAGGGTTGAAATCCGTTGGAATCTTAGAAAACACGGGAGTTGGAGCGCTCCTGGCCAGACAGGAGATATCTTATAAAAGTCGAAGCCAAAATGCGGAGAAATGACAGGTATCTGATATAAGTGCACTGGCTATGCAGAGGGGCTGCACAAGGGGTGAAAGCATGAGAAAAAAGCACATGCAATCGCATTGCAGAAAAGGTGAAAGCTGATTGAAATAGCGACCATGTCTGAATCAAATACACCTCTTGTTATAACGCCGATCCCAGTGTACGGATCAGTCACTGTCATCTCGCCGCAGGACCAAGACAAAGAACACCCCCAGACCTATCATCTGCGAGAGTCGGCCATCGTGCTGATCTGGGCCACTCGTCAAGGGCATAAGGTAACAGCGTGGGTGCGTGACGTACTCGACAACGTGTGGATCATCGTCCATGAAGACGATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 251362-252530 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKI01000002.1 Akkermansia muciniphila strain GP10 scaf-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 251362 33 100.0 33 ................................. GTGGCGGCTAGGGATATTTTCTTTCCGTTACTC 251428 33 100.0 34 ................................. CAGATACCAGCGTGCTTTCTTGAGGTCTTCAATA 251495 33 100.0 33 ................................. GTTAAACTACAAGTAAAACAGCTGTCAAGAAAT 251561 33 100.0 33 ................................. AAGTTCAAACTGTTGCATCACCTTGGTCATCAG 251627 33 100.0 34 ................................. GTCGCTGGTCAGATGCTGGTTGATGTAGGCCCTA 251694 33 100.0 34 ................................. GTCCCGGTAGCTGTAGTAGGCACTGGCACTGGCC 251761 33 100.0 35 ................................. TATCTCGCAAATATCATTATCTGATAAACACAACC 251829 33 100.0 34 ................................. CTGAATCCCATCTCAAAATTGGTAATGACATCGT 251896 33 100.0 34 ................................. GGATTTACGCTATCCAAGTAATGATGAAGCACTT 251963 33 100.0 34 ................................. ATTAAAGTATTCGACGATATGCCTCAAAGCTGGA 252030 33 100.0 34 ................................. ATACCATTCGGCGGGATAAAGCGTTAAGTGCGCT 252097 33 100.0 34 ................................. TTTGAACATTTCACACGGCCTTAATTCGCATCCA 252164 33 100.0 34 ................................. CCCACTATGGGCGTGGTAAGGGAAAACGCGGTCC 252231 33 100.0 33 ................................. CGTAGTTGTATTCCCACGCGTAGAATTGAGCGG 252297 33 100.0 34 ................................. TTCACCGTCTTGACGGCAAACACCCCAGCCAGTT 252364 33 100.0 34 ................................. GGTATCATGGTCACAGGTCAGGTGCAGGACAACG 252431 33 100.0 34 ................................. TCGTTGAGATTATCCAAAGCTATAGCAGACAAAT 252498 33 97.0 0 .................A............... | ========== ====== ====== ====== ================================= =================================== ================== 18 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGGCAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGGTGATGATGGCCTTCTTCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : CATCGGAAAGGCTTGCTATGTCCGGATTTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCCTGTGCAATGAGGTCCTGCAGGATGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 406668-408386 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKI01000015.1 Akkermansia muciniphila strain GP10 scaf-15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 406668 31 100.0 34 ............................... GACAGCGTGGGGCTGAGCAACGACTTGCTGAACG 406733 31 100.0 33 ............................... CGTGGATACGTGCAGGAGATGTCTGACATTTAC 406797 31 100.0 34 ............................... GTGCAAGGCGACTACATAGCCGTTCCATTTCAGC 406862 31 100.0 34 ............................... GTGCAAGGCGACTACATAGCCGTTCCATTTCAGC 406927 31 100.0 33 ............................... GGAGCAGAGGACAAGGCTCCCGTAGCCCTTGAT 406991 31 100.0 35 ............................... TGTATTACATTTGAGGGATGATGATTCTGGAGCGG 407057 31 100.0 34 ............................... CCGTGAAGGGGTTGATGGTACTCAGAAACTTGTC 407122 31 100.0 34 ............................... CGCCTGCTGTTGAGCCTGCCAGGACTGACGCATG 407187 31 100.0 34 ............................... ATCAGGGTCAGGGAGTCGGTTGTCATGCCACAGG 407252 31 100.0 34 ............................... CTCTTCTACGTCACTCTCGAAATAGTCCTCCCCA 407317 31 100.0 36 ............................... AATATATGTTTGAACAACTTGCAATTTCTTCTATTG 407384 31 100.0 33 ............................... CTTTCTGATTCTGGCTTCTTCCATTGCCTGAAT 407448 31 100.0 34 ............................... CGTCCAATCAGCATCAAGGCGCACTTGCAACCCT 407513 31 100.0 34 ............................... TTTGTAACCCCTGTTATTATGCTTTTTTTATTAA 407578 31 100.0 33 ............................... CGCTTCAATTTCGCTGGGAATCATACCGGGGAC 407642 31 100.0 33 ............................... CTCTGCACTGATAGCCCGGTAAAGCACCCTCAT 407706 31 100.0 34 ............................... CCCCGAACGCCTTTCTTCTTTAACGGTATTTTTG 407771 31 100.0 34 ............................... TCAAGACCTGCAACATTATCGACGAAACATATAT 407836 31 100.0 35 ............................... GAGGTTATCAATGCAGGATTTTACATCTTGCGGAA 407902 31 100.0 34 ............................... CTGATAAATTGTGAAGTGCAGGCCCCCGGCGTTG 407967 31 100.0 34 ............................... AGCAGTATTCAGCCATCCGGCTTTATCATCATCC 408032 31 100.0 35 ............................... CAAAAACGCGTGGACGACGCCCGCGCCAGCCTCGC 408098 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 408162 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 408226 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 408291 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 408356 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== ==================================== ================== 27 31 99.6 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : GTCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //