Array 1 2873-134 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABQ01000137.1 Streptomyces sp. PRh5 contig137, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 2872 37 100.0 34 ..................................... TCGCGTCTGGGCTTTCGAGGCTGGGCGCGCGAAC 2801 37 100.0 36 ..................................... CCACAGCCGGACGAGCGGAGACGCCGATGCCTGGAT 2728 37 97.3 35 .................A................... AACTTCCAGGCGTACATCACGACGGTGACCCACAC 2656 37 100.0 36 ..................................... CTGCTGTACGTCGGCATAGCTGGGTCCGGCATCCGG 2583 37 100.0 35 ..................................... GGGGGAGTCGACGGGCTCGTCGTGCGGGCCTCCCA 2511 37 94.6 35 ............C...............A........ GGCAGGCGCGGGTAGCGCAGCATGTTGCCCGCCTC CC [2496] 2437 37 94.6 36 ..........T.C........................ CCCTGCACCGACGGCTGCGCGATCACCGGCCTCGAC 2364 37 94.6 36 ............C..T..................... GGTATGGGTGGGCACGCGTACGGCGGGATCATCGGG 2291 36 94.6 37 ............-..T..................... ATCGAGCTGGCGTCCGCGATCGACCCGCGCATCCCGT 2218 37 91.9 36 ............C...C..T................. GCCCGCACCAGCGACACCCCGGCGAACTACCGGCTG 2145 37 91.9 36 .........G..C...C.................... TTCCACCCCCTCGCCGCCGGCGGCTGCGTCCTGGAC 2072 36 97.3 35 .............-....................... GGCCCGCACCTCGCCGTCGCCGGGGAGGGCTGGGT T [2063] 2000 37 91.9 35 ...........TC....T................... GAAGTCGGCTGGGGCGCGCCAACTGCCGATGAGGT 1928 37 94.6 35 ............C..T..................... CCAGGTCTACAGCTACTTTGCCAACGGCGGTCAGC 1856 37 97.3 35 ............C........................ TGCGCGACCGGGTTGCCCTTGAGGTCCGTGGCGTT 1784 37 97.3 37 .......................T............. CAGGAGCCTTTCGGCCCCGAGTACGTACGCCCCACCC 1710 37 83.8 36 .........G..CT...T....G.....A........ TACATCCGTGACCGGCACGTCGCGGAGGATCTGAGC 1637 36 83.8 37 A........GT-....A..T................. CATGACAAGCCCGTGGACTGGCGCATCGCCATCGCGA T [1623] 1563 36 86.5 35 C.....C..G..-.......T................ CTCCAGAAACCCCCGGGATCAACCGGGTCGATCAC C [1548] 1491 37 94.6 36 ............C..T..................... GCGCGGTCCGTCCGGGCCGGTATCGCGGCCATCGCG 1418 37 97.3 36 ............C........................ TCGTAGGGCCTCACGGCTGGCCGGGAGAGAGCCCGG 1345 37 100.0 35 ..................................... GCCCATACCAGCGGCCAGCCGTGAAACTGCTGGGC 1273 37 100.0 35 ..................................... GCCCATACCAGCGGCCAGCCGTGAAACTGCTGGGC 1201 37 100.0 35 ..................................... GACGACGCGCTAGACCTGGCCGTCCGCCACGGCGT 1129 37 100.0 36 ..................................... GCCGAGACCTACACCAGCACCAACGACGACGGCAGC 1056 37 100.0 36 ..................................... TTCGGCTCGTGGCCGTTGACGGTCTCGAAGCACCCG 983 37 94.6 36 ............C.......T................ ACTCCGTGGGGTCTGACGTCCCCGATTCGGACGACG 910 37 91.9 37 ............C..T...................G. TACGAAATGATGCGCTCCCTGCCCGGCGTGACCGAGG 836 37 94.6 37 ............C...............A........ ATCGAGCTGTCGTCCGCGATCGACCCGAGCATCCCGT 762 37 83.8 36 .....A...G..C...C..T.......C......... GCCCGCACCATGGACACCCCGGCGATCTACCGGCTG 689 37 86.5 37 .........G..C...C.........T......T... CTCGGCACGAGCGCCGGGCTCGTCGGGATGGCCCTGG 615 37 81.1 27 .C........T.C...T...T.GT............. GGTTTCCGGCGCGGTGCGCCGCGTCTC Deletion [552] 551 36 89.2 52 .........G..-......AT................ TTCGAACAGGTCAGACGTTCCTGGCCAGCGGGAAGTGGCGGTCGGGCACTTC G [537] 462 37 81.1 37 .......G.GT..T.A...A..G.............. CACGAGCCTTTCGGCCCCGAGTACGTACACCCCACCC C [437] 387 36 86.5 36 .........G.-.....T....G.....A........ TACATCCGTGACCGGCACGTCGTGGAGGATCTGAGC T [373] 314 36 83.8 35 A........GT-....A..T................. AGCGAGATCTGCGGGTCCCGGGCCTCATCCACCGT T [300] 242 37 91.9 35 ..........T.C........A............... GAGCAGGCCCAGCAGCAGGCCGCGCTGGACCAGAT 170 37 89.2 0 .........G..CT.................T..... | ========== ====== ====== ====== ===================================== ==================================================== ================== 38 37 93.1 36 GTGGCGGTCACCTCTCGGGGCGACCGAGGATCGCAAC # Left flank : CCGACCCTGCCGCCACCCCGGCGCTCCACCTCAAGAAGTCTCGACTGCCAGGAACAAGATCCCTTCCCAACATCATGGATCAGTGCCAGGAACCCCGCGAGCTCACCCGCCCCGAAGAGGTCGCCGAACCGCCGAGCCAACGCGGCCGAACCCCGCAAGTGGTCTTCCAGAGAATGCCGGTGCCCCGAAACGGCACTTCGGCTGTGCGCGTACAGCGGTGCGACAACGGACATAAACGAATCCCTCCTCGGAACCGCTGATCTCCACTCAGCAATCGAGGATGGGAACTTACACAACGCCACTGACAAGCCGCGTAGGTGGCAGTGCGCAGGCTGTGGTTACGCTGTCATCGTCCACACCGAAGGCAGTGCTTCGGAACCTCTAGTGCACGCGCGACACGCGGATCGCTCCGAAGGAAAATGCCTGACTGATGCGCTTATGCTCCTCTCACCTCCGCTTCGCTCAGAGCACAGATAGTCTGTCTGACCTGATCAACCAGC # Right flank : CACGTCGGTGCAGGAGGAACGGCCTATTCACGGTCCTAAGAGTCTACTCATCAGGGTAGGAATCCATCGCCCCTGCTGTCAGCAGAGGGTCTGTGCGGACATGGCGCGGTGGCAATGAGGGGGACTCTGCGGAT # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCACCTCTCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCACCTCTCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [58-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 11629-12315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABQ01000137.1 Streptomyces sp. PRh5 contig137, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 11629 37 100.0 36 ..................................... AGGATGGCCAGCGTCGGATCGTCCTCGCCTTGGAAC 11702 37 100.0 36 ..................................... GGTGTCACTGAGGGCATGCTGAGGATCCGACTGGAC 11775 37 100.0 36 ..................................... CCCGACTGGGTCACCGAGACCTACCAGGCCCTCGAG 11848 37 100.0 35 ..................................... TTTGCCCGGATTGCGAGGAGTGGCACCCGCTTCGG 11920 37 100.0 36 ..................................... CCCGCGTCCAGGACACCGGCGACCACCGCTACCGCC 11993 37 100.0 36 ..................................... CCGGGGCCCGCTTGCCACCACGCGTCGGTGACGGTG 12066 37 94.6 37 ....................C.G.............. GAGGTCTCGGCGCTGATCACGGACCCGAAAAATGTGT 12140 37 89.2 26 ................AT..........A...A.... CCCCGCAGCACCGTCCGCCATCCCTG Deletion [12203] 12203 37 75.7 37 CC..GT....GTG............C..........T AGTAAGACCGTCTGGGTGCCGCAACCCGACTCCGGTA A,G [12211,12217] 12279 37 94.6 0 .............C..........T............ | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 95.4 35 GTGGCGGTCGCCCTCCGGGGTGACCGTGGATCGCAAC # Left flank : AGGCCCGCATCCTTGCCCGCCACCTACGCGGCGAACTCCCCGGCTACCTCCCCTGGACAGCCGCCTGATGGACATCCTGCTCACCTACGACGTCGACACCACCAGCCCCGAAGGCCGCCGTCGACTACGCCGCGTTGCCAAACTCTGCGAAGGCCACGGCCTACGCGTCCAAAAATCCGTCTTCGAAATCGTCACCGACTACCAAACCCTCCTCCAACTCCTCGACCGCCTCAACGACATCATCGACATCGACACCGACAGCATCCGCCTCTACCGCCTCCCCCGAGAAGGCTTCGACGACGTCCAAACCCTAGGCATCGCCCAAGTGCAGCCGCACCGCGAAGATCTCGTCCTGTGATCGCCCTCCCCAGCTTCGGAACCCCAAGTACACGCACGCCACGCAGGTCGCACCGAAGCAGAACACCCGATTCCAACCGTCTTGTCCAGCCCCAACGTCCCCATGAAGACTCGACGTACAGTGTTCTCGCTGATCAACTGGC # Right flank : CGTCGTGCTGGACGTCAACCAGGAAGACCGTCGGCCACAACCGCACAGTGTACGCACGCTCACGGCCGTCGATGTTGAGGCTGGCGGCCGCAGACCAGGGCGGCGTGCGCCGTCAGGGGGACAGGTCGACCGCCGAACCCCTCCGGCGCTGTCGATCCCGCTTTACTCGAGGGTCGACTCACCCCGGCCAGCAGGCTGGGCCGTTTCCAGTACGGGCTGTTTCCCCGGCGCTCAGCTCGGGCTGCGGCAGCATGCCATCGACCCAAACATTACACAGCGTGGCCGACTGTCACACACCGACCCGACCTCGCCGCCCACAGCCAGAGCAGCGGCGCAGATCCCCAGGCAGCCACCTCCGATGACCTGCGTCCCATCAGCGTCCCGAATTCGGCCTCCCCCCCGCTCGCACAGCCCACCTACGGCGGCTTGCCCCGGCAGAGAACCGAGAACTCCGCCCAGGTCAGAGCGGCGCCAACCAACCCTGACGGCCACGGCATTGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGTGACCGTGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.10,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //