Array 1 354754-354099 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012200.1 Thermococcus sp. 2319x1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 354753 30 100.0 44 .............................. TTTTGTATGCGTATATCAATCGCCTTATGACGTCATCGTAGGTC 354679 30 100.0 36 .............................. GTCGGTCGGAAGAAGGAAGGTGTTCTGGCAATAATT 354613 30 100.0 35 .............................. TGGGGGATTTTCGACAGAGACAAGATTAAAGCAAG 354548 30 100.0 41 .............................. CTTCCTCTTCGAGTCTACTGAGGAGCTCTTCTATATTGTCC 354477 30 100.0 41 .............................. ATGTCTGCATAGTAATACCGCACTCCATCGACCTCCTTGTA 354406 30 100.0 38 .............................. CTCTTGTTGTAGAGGACTTTGATTTCAGCGTGTCCAGA 354338 30 100.0 38 .............................. TCGAGCAGGATTTCCTTCGAGAAGCCACCGGATTCCCT 354270 30 100.0 37 .............................. TGTCTCTCTCTTGATGACCTTGACTTCCGTCTTCTCG 354203 30 100.0 45 .............................. GTACTTGGGGGCATAATACAGTTAGAAAACATCAACATAGAAAAA 354128 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 10 30 100.0 40 GTTCCAATAAGACTTCAAAAGAATTGAAAG # Left flank : AGAAAACTCAGAATACTTATCGAATAGTTCCGTATCACGTTTAGCTTTTTCTTTTTCGGGTTTTCTTTCTTCTGTTGGGCTGTTTTTGATTTTTAGCCTCCAAGGTTGCTCTGGATGTTTTTAGTAACTGAAGGTTATTATCGGACAAAGAGTCACAAGTTTTTGGGTTTTTGTAACGAAATTTTTTCGGGTTTTTGAGCGAAGGCTTCTCAGGAATTCTTTAACGTTCTCTCCTCGCGGAAATTCGACCATTTTTAGTTTAAAGTGTTTTTATTAGCCTATTTTTAATTTTAGCCTTCGTTCTGTCTCTGGAAGTCTCGTGAACAAGATTGAACATGGGAGAAAAAGAGTAAGTTCAGGCGAGTGAGTGTTTTGGAGTCTTTTCTGAGGGCCCGAATTCGAGCTTTTTGAAGGGAGTTTTATTGACCCTTTGACGAAAAGCTTATAAGATTCAAGCCATCTAATTACTTTGTAAAGGATTTCAAGGAAAATTCACCCCT # Right flank : TCTACTGATATAACTCTAAAGAATTTGCCAAATGGTTTAGTTCCAATAAGACTTCAAAAAGCTCTTCTGCTGCAATCTCCTGCTCTGTGTCTTAAATGTTTGTCACATAGATTGGAAAAAATTTCTTGTTAATGCCCAATATAGACGGAAAATATTCCGTAAAATTTATATTCTATCGATGAATTTTCGTAATTGAGGTAGTCAAAATGTACGAGCTTATAAACTTGTCTACTGGCGAAATTATTAGGACGGGTGAAAATTTGGAGGAGCTGCTTCAAGACTTGCCAGAAGGCTTTTACGAGATAAAAGAACATGGAGAGTTTGTGAGGTTTTATAGCACAACTAAACCCGAGCACCAGTGCTGGATTTGAGACTTTTTAATTTTTTGAAAAATAACAAAAACTAAAGAACCCTTCTCAGAATTTCCCTCAGATCCTTTAGAAACTCCTCAAGGTGCTCTCTCTTTACATGGGGCATCATAACGATTCTTATGTATCCTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTCAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 2 575585-575278 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012200.1 Thermococcus sp. 2319x1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 575584 30 100.0 41 .............................. GCACAGGAGGAACAGAAAGCACGGTTTAAGATAGGCTTGAG 575513 30 100.0 38 .............................. TGGAGCGGCACGTTCAAGGTTCCAATCGTTACGACCTC 575445 30 100.0 38 .............................. GCCTCCTTTTTTTGTTTGTTCCCGCCGGAAAGCCCGTT 575377 30 96.7 40 .......................C...... GTCACTCCCCTTTCTCCCCCATCACCCATTCTTTTATAAA 575307 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 5 30 99.3 40 GTTCCAATAAGACTTCAAAAGAATTGAAAG # Left flank : ACTACGTGAGTGAATAGCCGAAGATTCTTTGTATCACGTTTAGCTTTTCCTTTTTCGGGTTTTCTTTCTTTTTTTGTCCATATTTTGATTTTTAGCCTCTAAGGTTGCTCTGGATGTTTTTAGTAACTGAAGGTTATTATCAGACAAAGAGTTATGATATTTTGAGGTTTTTGTAACGAAATTTTTTCGGGTTTTTGGGCCGGGGATTTCCGGCACTTCTTTTGTATCCCCTCCCAGTGGAAGTTTGACCTTTTCGGATTTAATGCTTTTTTGTGGTTTTGTTTTGGGTTTGGGCTTTTGTCCTTCCCCCGGAAGTCTTGTGAACATTTTTGTGCATGGGGGAATTTGAAGGTTTTCGTTTGCGGAACAAGCCTAAACTCTTAGTTGGTCATTGGAATCGGAGGCTTTGAAATGCTGTTTTATTGACCCTTTGACGAAAAGCTTATAAGATTCAAGCCATCTAATTACTTTGCAAGGAATTTCAAGGAAAATTCACCCCT # Right flank : CTTAAAACCTCAGCACTTGAAAACGCTGGGTTTTTAAACTCCAACTCTTCTACTCTACCATATATCAAAGGAGGGTGAGAGAATGGACAAGGTCTATCTCACGTGGTGGCAGGTTGATAGGGCGATCTTCTCACTTGCTGATAGTTTAAGAGGATACAAGCCTGATGTTATCGTTGGAGTCTCGAGGGGTGGACTTATCCCGGCGGTAAGGCTCAGTCACATTTTAGGAGATGTTGAGTTCAAGGTAATCGACGTAAAGTTCTACAAGGGTATTGACGAAAGGGGAGAAAAGCCCACGATAACGATCCCGCTCCACGGGGACTTAAAAGGAAAGAAAGTCGTAGTAGTGGATGATGTCAGCGATACAGGAAAGACTCTGCAGGTTGTTATCGAGGAAGTAAAGAAGAAAGGTGCAAAAGATATCAAAGTGGCATGCTTGGCAATGAAGCCGTGGACTTCAGTTGTGCCTGATTTTTACGTTTTCAGAACAGACAAGTGGA # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTCAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 3 1129000-1130470 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012200.1 Thermococcus sp. 2319x1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 1129000 30 96.7 37 .................A............ AATGTAATGCCCATCCCTCAAAATGTAAACTCTTGCC 1129067 30 96.7 36 .................A............ GGCACAAAGGGAACAGCAGCAGCGCTTTAAGATAGG 1129133 30 96.7 41 .................A............ GACCCGGCATGGGAGACCTGGAAGCAGTGGCTGGTCTACGG 1129204 30 100.0 40 .............................. GAAGCCTTAACGCCTTCGTACTGGACTGGTTTCCTCAATG 1129274 30 100.0 39 .............................. TTGGGGCCGAAACCAAAGTTGTTTGCACCAACTCCAAAC 1129343 30 100.0 40 .............................. AAATTCGATGATACGACTACTACTCTTCGATTCCTCAAGT 1129413 30 100.0 47 .............................. GTTCGAAGCCACCCATAAGCCCAAATAGACCACTGTCACCCCAACGA 1129490 30 100.0 38 .............................. ATAAGAGCTTTGACAAGCATGCCGTTGTCAGCGAGTGT 1129558 30 100.0 39 .............................. CTCAGAGGGAGCGGTGAGCTTCTGGCTCAAATGGGATGG 1129627 30 100.0 38 .............................. CATATTGCCGATATCCAATAGTCAACAATAGGCCTACA 1129695 30 100.0 39 .............................. TTAAAATACGTTACACTCGGTGATATCTGAGACCTCTGA 1129764 30 100.0 38 .............................. CAATAGCCGACTTACCTATAGCCAATATCCAATATCTG 1129832 30 100.0 36 .............................. ATGTACTTTCTTGCCTTTCCGATCGGCCCGTAATTC 1129898 30 100.0 36 .............................. TTGCGTTCTTCACTCCGTCCTTGCTCGTTACCAAAT 1129964 30 100.0 38 .............................. CTTGCGGGCCTTGAATTCTCACCACTACCCCATCCTAT 1130032 30 100.0 40 .............................. GGGGTGTGTGGATAGAGAACATGGCCAGCACTGACATCAA 1130102 30 100.0 37 .............................. GCCTTTGCATCCCCGCCATACCTGTCAATATAAACGA 1130169 30 100.0 38 .............................. TAATCTTCTGAAACATTGTAGTCCACATCGTTCCCAAT 1130237 30 100.0 36 .............................. GTGGGAGCACTATCAGGGCTCCCATGACAATTCCAG 1130303 30 100.0 40 .............................. CCGGCTTCTTTTACCGCATTCTCCCGAACGAGATCTTCAT 1130373 30 100.0 38 .............................. TTCGCTAATGCCATTGCTGTCCTGTCATCATATTCTAA 1130441 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== =============================================== ================== 22 30 99.4 39 GTTCCAATAAGACTTCAGAAGAATTGAAAG # Left flank : AACAAGCTTTCTTTTATGTCTTTTGGAATGTTATCACGTTAGAATAACCTTATTTTCAGTTCTCCCTTGTGTTGGGGAATTAAATTTGAAATCATTCTATAAGGTTGCTCTGGATGTTTTTAGTAACTGAAGGTTATTATCGGACAAAGAGTTACAAATTTTTGAGGTTTTTGTAACGAAATTTTTTCGGGTTTTTGAGCGAAGGCTTCTCAGGAATTATTTAATGTCCTCTCCTCGCGGGAATTCGACCATTTTTAGTTTAAAGTGTTTTTATTAGCCTATTTTTGATTTTAGCCTTCGTTCTGTCTCTGGAAGTCTCATGAACAAGACTGGACATGGGAGAAAAAGAGTAAGTTCAGGCGAGCGAGTGTTCTGGAGTCTTTTCTGAGGGCCCGAATTCGAGCTTTTTAAGGGGAGTTTTATTGACCCTTTGACGAAAAGCTTATAAGATTCAAACCATTTAATTACTTTGTAAAGGATTTCAAGGAAAATTCACCCCT # Right flank : GATAAAGCAGAGATATTCCAACAAAAATTCAAAAATTGCACTACTTCTGAGCAACTTTGTTGATGAGCCTCAAGATATAGGTGTTTTCTTCGACGGTTGTTGCTCCCCTGTTTCTCGGGATACCCAGCTCAAGCTCGGCCTTTATTCCATGTTCCTTAAGAAAATCGTGAGCCTTTGCTTTTATGCTCCCATACTCACCCCTTTTTATCAGCCCATAGACCGTTGGTCCCCAGGAGCTCTGGCCGTAGCCGTATGCGTTCTCACTCAGGAATTCCGTGATGAGCTTAACATCCTCTCTGAACTCTCCACCCTGATACTCTTCAAAGTGCTTCCCAACCAGTTTTTGGATTTCACTCAAGTGCTTTCCAAAATCTTCGATGTTTCTCTCCTTCAACGCCGGCAGCAATCCCAGAAGAACTCTGTGGGAGATTTTCTCCGCTACGCTGCTTTCCCCTTTCACGCTCTGCATTATTGGTTTTTCCTCCTCCTCGTCAAAGCCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTCAGAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 1528556-1525333 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012200.1 Thermococcus sp. 2319x1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 1528555 29 96.6 38 ...............G............. CCCTCCTTCCGTTGTAAATAACGAGCCTGGATCTCGTT 1528488 29 96.6 42 ...............G............. TCGTCTATGCAACGTACAGGATCGTGCAGATACTCAAAGCAT 1528417 29 96.6 38 ...............G............. CGTACTCAGCAAGCCTGTTTGCGTTGATCTTGGAACCA 1528350 29 96.6 41 ...............G............. AAGAAGCGTACATAAAACAGCTTGAGAAGAAGGCACTAAAC 1528280 29 96.6 42 ...............G............. AAATACCAAAAGCCGTTTACAGTGGCATATCCGGTGCGGGAA 1528209 29 96.6 37 ...............G............. CCTTACGCACACACACTACCTATACCCACACTTACCT 1528143 29 96.6 39 ...............G............. CCTGAAGGCTCGGTTGGTTTCGTGAACCTCGAACTTAAT 1528075 29 96.6 39 ...............G............. TAGAACACTTTTTCGCCCAGTGGATGATTCAAAGACCAT 1528007 29 96.6 39 ..........G.................. TCGCTTATTTGTTCAATTTGACGTGGTTCTAAGAGATCA 1527939 29 93.1 40 ..........G.....T............ AGGAGTAGAAGGCCCTCACAACGTGCCTCGAGGCTTTCAT 1527870 29 100.0 40 ............................. TTAACCTCTTCCTCATACTCTTTAACTAACTGTTTTACAA 1527801 29 96.6 45 ..........G.................. CTGTATACACCACCTATTTGTTCAATATACGACTGCTCTTCCCCG 1527727 29 96.6 40 ..........G.................. GCAAAGCTGATGAACAGTTACATGGGGACTCTGCCTACGA 1527658 29 100.0 39 ............................. CAGGCACCATGGACACCACCTTGCAGGCATCACCACCAT 1527590 29 100.0 42 ............................. TTTTGTAGACATCGATATCTAATGTAAGCCAGTTTTCCCCCC 1527519 29 100.0 42 ............................. ACTTCTTCAAGCGCCATGGACTGCACCGCAAGGAAACCGAGT 1527448 29 100.0 43 ............................. ATGTCTCTAACCGTCGCTCCGGCAATCTCCCACCATATCACCA 1527376 29 96.6 42 ................C............ GAGAACACCTTAAAGCTAATCGAAGTACCATCCTTCGTGCTT 1527305 29 100.0 41 ............................. TAAAGGTTGAATTCTATAATATAATTGAAAAAACCATAGGG 1527235 29 100.0 36 ............................. AGGATTGGTTCAACTCGGATCTGGACATAAACGTGG 1527170 29 96.6 40 ..........G.................. TTAAGCGTTCTTTAATTTTTTCCTCGGTGTTATCGGCCAA 1527101 29 100.0 39 ............................. CAGGTGGAGAAGGGCTATGGAAACACAATGAATGCGACT 1527033 29 100.0 37 ............................. ATGAAAACCCTGTTAGTTTCGTGGATTTCGAATTTGA 1526967 29 100.0 36 ............................. GCTTCAGCTGGCCCGACATTTCCCAAACGAGGCTGT 1526902 29 100.0 42 ............................. TCGTGCTCCCGCTCACCGTTGCGCTTGGAGTGATAAGAGCGG 1526831 29 100.0 41 ............................. AAGAGTTCTATTAGCTCACTGCTTGAGCTTTCGGGAAACTC 1526761 29 100.0 41 ............................. TATAGCCTTACGTCATCCATAGGACTACTTATGTTCTCAAA 1526691 29 96.6 38 ........................A.... ATCCCCGCTTCCCAGCACTCTTCCCCACCCCGAACATC 1526624 29 100.0 37 ............................. CGACTGTGTCGTCAAGGCGACCTGGCGTTGCGGTGAC 1526558 29 100.0 40 ............................. AGTATATCGTCAACTCGGTGGGAGTGATCGTTTTTTCCGT 1526489 29 96.6 39 ..........G.................. TCGAACAACACGGTGTACCCTAGCGTTTCTGCTAATTCT 1526421 29 96.6 38 ...............G............. GTCCACCAGTATTCTTGTCTATATTCTTCTATGTACTT 1526354 29 100.0 45 ............................. ACGTATTCTACCTTTTTGGCACTCTTCAGTTGTTGTGCATGCCCG 1526280 29 96.6 44 ..........G.................. CATGTAGTTGTTTAACAAAACTTATAAGTTTCAAAGTTGTTTAA 1526207 29 96.6 43 ................A............ AGGTAGGCAAGAAGAGAAAGAGAACTCTTCCGGTGATATTCAG 1526135 29 96.6 42 ..........G.................. CAGATGAACAACTTAGTGAAATCCTCGAAGGAAAAGTGAAAA 1526064 29 96.6 40 ..........G.................. CGACCTCTTGGCTAATTCTTCTTGAATAGCTGAAGACCGG 1525995 29 96.6 44 ..........G.................. AACGATTCATCTCTGATATTAAGCGACCCGGTATCTGTTTCCGC 1525922 29 96.6 39 ..........G.................. CCGTAATATTCTTCTGCAACTCCTATGAGATATTGTAAT 1525854 29 100.0 39 ............................. GCATGCTGTCCGATGTGGGGATTGGGAAACTAGACGTTC 1525786 29 100.0 35 ............................. ATCTCTCTGTGTTTGTGAAGGATACCATGTGCTAT 1525722 29 100.0 41 ............................. TTGTACACATATCTGGACTTGTCGTCCATTATTTCTATTGA 1525652 29 96.6 44 ..........G.................. ACAACGTAATGCCATCCATGGTCTTGTATTACGATGTTTTTACA 1525579 29 100.0 44 ............................. TTTTCGTCTATGACTACGAGGTACTTTTGAGCTCTTCTTTTCAG 1525506 29 100.0 37 ............................. ACCCAAACTATCCTCCCTTGCACATTGGGAACATCAA 1525440 29 100.0 50 ............................. CTGATTTGTTGTCTATGCCCGAAATATGGCTTTTTGTCTAGTATCAACCG 1525361 29 82.8 0 ......................C..TGGT | ========== ====== ====== ====== ============================= ================================================== ================== 47 29 97.8 40 GTTTCCGTAGAACGTAGTCGTGTGGAAAG # Left flank : GTGCTACTCTTTGACAAGGAGCCGGTTTTCGTGTTCTGAGTTTATGTTTTCTTCCCCGCTCACCTTTCGTTTTTGATTTGAACTGTTTTCCAGGTTCAAAGCCGGATTTATAACGGCCAAAAATGTTTTCGTTTTCCGTTTACCACGCCGGTGGTAAGGATTCGCCGGATGGACACGTTTTGCAGAAAAGGCGTGAAAGGTTCCAGACGTGAAAACGGCCCTGAATTCCGGGATTTTGGAGGGTTGAAAAGCCATATCTGCAGCCGGATTTTGTTTTTAATTGTTTTTTCAGGCCCAAATTTATTGAGTAGGGTTTCGATTTTTGGAGGGCAATTTTTAACCGACCAAAAGCTTTTGTAGGTAATTTCAAGCATTTTCGTAGGTGCTCTATTTTTGCGTCAGGTTTATAAATGGGCTGCAGTGCCATGGGTTTTCGGGGCAAGGTTTAAATAGGAGTTCTTACGTTATTCCATTTAGGCATCCGGGGAAAAAAGTCGAGG # Right flank : GATATGAAGAGGCCCGTCTACATAACCCAGATTGGCATGCTCGAGAGGAGGGGCTGGTTTGTAGATAGTTAAAAGCGTAAAATTTAAGTATTTTTGTTTCATAATTTGTTTTGGTGAGGTGTGGTATGAGGCTTTATCGGACAGGGAGGGCGTCAGAACTCTTAGGCATAAGCAAACCAACACTCATCAGGAAAATTAAATCTGGTGAGATTAAGGCTTATCGGGTTGGGAGAGAATACCGCATTCCAGAAAGTGAAATTAAAAGACTTCTTGAGGGTAAAACCCTTGAAAAAGTTGTCATCTACGCAAGAGTCTCAAGCAGAGACCAGAAAGAAGACTTAGAGAGACAAGTTGAACACCTCAAGAACTACTGCTCCTCAAAAGGCTACCAAGTCATCAAAATCATAACCGACATCTCATCAGGCTTGAACGAGAACAGGAAAGGCTTAAAACAACTCTTCAAACTTGTGGAGAGCGGGGAAGTTGGCAAAGTCGTGATA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACGTAGTCGTGTGGAAAG # Alternate repeat : GTTTCCGTAGGACGTAGTCGTGTGGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 5 1540804-1539526 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012200.1 Thermococcus sp. 2319x1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 1540803 29 100.0 37 ............................. TTCTATACCTGCCTTTTCCTTCTCTAGTTATCCCTCC 1540737 29 100.0 40 ............................. AGCAATACAAAAGCGTATACGTTGACTATATCTTCAGAGA 1540668 29 100.0 41 ............................. CGGAGGCACTAAGAGAAGCTACCCAGCGGTTCATCGAGGAA 1540598 29 100.0 38 ............................. TTTCTATTGCAACTCTTGGGTCGTAGTTTGCTACTGAT 1540531 29 100.0 38 ............................. TTGAAAAAATCTCGGTTATCTCGGCGCTCATCTCGAAA 1540464 29 100.0 43 ............................. AGTGTGTGCGGTAAGTGTGTGTGGGATATAGGTAGTGTGGCTA 1540392 29 100.0 37 ............................. GCTATGCTTATCATGTATTCTAACCTTTCGGCTCTAA 1540326 29 100.0 42 ............................. GCCTTTGCCGCTATCTCTTTTGTAGCATTCTTTAGTTCATCG 1540255 29 100.0 42 ............................. ACTAAAACCGTCTTCTGCACAACTCCCCTAATCACTCCATTA 1540184 29 100.0 39 ............................. CGCTTTCCCACACATGTTCGTTTTAGCCTACGACCCGGC 1540116 29 100.0 43 ............................. ATATTTTGAATTGCTACGACCATTCTGCCCCACCCTGACCAGC 1540044 29 100.0 41 ............................. CTCTATCAAACCCTCAAAAATCCACCAAGAGCTCCACCTAC 1539974 29 100.0 43 ............................. AGCATTTCCTCGGTCTCCTCATACACTCTCAATAGGAAACCAT 1539902 29 96.6 44 ..........G.................. TAGAAATCCGCAAGCTCTACTTCAACAATGATGCTGTCGTCCAA 1539829 29 96.6 40 ...............G............. AACCATTTCTTGTCACACCAGAAGAAGTAATCGAAGCTGT 1539760 29 96.6 40 ...............G............. CTGCTTCTCTAATGACCTCCTCGAAGCTGATTCCGTCCCT 1539691 29 93.1 38 ..........G....G............. AACGTTTACTTCAACGATTTTGTCGTCCCAATATCCAA 1539624 29 100.0 41 ............................. GTCGCTATAACCCTTGCCTTAAAGTAACTCTGCATGCCCCA 1539554 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ============================================ ================== 19 29 98.9 40 GTTTCCGTAGAACGTAGTCGTGTGGAAAG # Left flank : GTGCTACCGGGGGAGGGGAAGGGCTTTACCGCTTTTCCCAACTGCCGGTACGAACCTGTTCGTCCTGGGATTCGATGGAGAATGCTTCTGGAGTAGTTTAACATGTAAAGCTTCCCGGAAAGCGATTTTTGATTTCTGTTTACCTGTCCGGTGGTAATCCCATACCAGATGTATCCATTTTAAATACAACGCCTGAAACAGCCCAAAACCGGTGGCGGTGGAATTTGAGAGGAGATTGAAAGGTTGAGATCCCGTAAAAATGCCATGATTAATTTTTTACTGGTTTTTGACAATTTAAATCGGTTTAAACGGTTTTCGATCGTTTGGAATAATATGTTGAGCTGTTTCAGTGCACCGATAGGATAGAGGAGACTTTCAACAGCTCCTTGCTTTTCGGGTTGGGTTTATAAATGGGCTGCAGTGCCACGGGTTTTCGGGGCAAGGTTTAAATAGGAGTTCTTACGTTATTCCATTTAGGCATCCGGGGAAAAAAGTCGAGG # Right flank : CTTTTTCGGAGCTCCCGTCCCGTTGACTCTTTTGGAACGGAACAAGATTACGGGAAGCTCAATTGCCTGAAAGTCAGAGTTTTTATATCTTGAGAGTAGTAAGATTTATAAGCACCGGAATCCTAATAGTTCTTTGGCAGTGTGCACTGCCGGGTGTATGGAATGAGACTCAAAATCTCACTGAACATAGAGAACGGCACGTTCTCGCGCCCCAACAAGCATGCCGTCCAAGGGTTTATCTACAGCATGCTGAAGGATAGCGAGTACGGTGAGAGGCACGATGAGCCAAGGTTCAAGTTCTTCACATTCTCTGACTTCTTCATCGACAAGAGAGGGAGGCCAACGTTTCTGGTATCCTCGCCGGATCCGGACTTCATAAGGGCGCTTTACTCGGCGATCAGGAAAAGGGAGACGGTCTACATAGGGAAGGAGGAGTACGGAATATCGGAGCTCAAGAAGTTCCGGCTTCCGTTGAGGAAGGCTTTCCAGACAGGTTCACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACGTAGTCGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 6 1670944-1671658 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012200.1 Thermococcus sp. 2319x1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1670944 30 100.0 40 .............................. TCTCTCACATATAATGTAACTTCTGACAATGCATTTTCAA 1671014 30 100.0 36 .............................. ACGGAGCAGTGCATGTAAAGAACGTGGCCGGGACTG 1671080 30 100.0 37 .............................. CTTTTGCTCCGGCAAAAGCTTGTGGGCAGTCAAGTTG 1671147 30 100.0 38 .............................. AGGACTGCTACTGTCTGTGGGACTTTTAGGTTAAGGGT 1671215 30 100.0 38 .............................. TAGGGCATGTCGAATGTCGTCCCTTACTGCGTAATCTA 1671283 30 100.0 38 .............................. ACTGTCACGACTACGGGTATCAACTTTGTTGACATAAC 1671351 30 100.0 41 .............................. GACGGCTTTAGCCTCCCCGCCCAGCACACATATGAGCTCTA 1671422 30 100.0 37 .............................. GGCAATGGGTATACTGTCTCAGTTGCGTATATTTCGT 1671489 30 100.0 41 .............................. TCCCCGGCTTGCGGATGACAATTCTGTCCGGGTAGACCTCC 1671560 30 100.0 39 .............................. CCCTGTAGCCTTCCTGTTCACACTATCCCAACTCTCAAT 1671629 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 11 30 100.0 39 GTTCCAATAAGACTTCAAAAGAATTGAAAG # Left flank : TATAAAACAGAATAATCTTCGAATATCATTATATCACGATGTAAACTGATATTTTTGAATTTTTCAGCTTTTTCCGTTCGTATTTTGATTTTTAGCCTCCAAGGTTGCTTTGGGTGTTTTTAGTAACTGAAGGTTATTATCGAACAAGGAGTTATGATATTTTGAGGTTTTTGTAACGAAATTTTTTCGAGTTTTTGAGCGAAGGCTTCTCAGGAATTATTTAATGTCCTCTCCTCGCGGGAATTCGACCATTTTTAATTTAAAGTGTTTTTATTAGCCTATTTTTAATTTTAGCCTTCGTTCTGTCTCTGGAAGTCTCGTGGACAAGACTGGACATGGGAGAAAAAGAGTAAGTTCAGGCGAGCGAGTGTTTCGGAGTCTTTTCTGAGGGCCCGGATTCGAGCTTTTTGAGGGGAGTTTTATCAACCCTTTGACGAAAAGCTTATAAGATTCAAGCCATCTAATTACTTTGTAAGGAATTTCAAGGAAAATTCACCCCT # Right flank : GCTCTTTAATGAACAACACTTTTAAACCCTCTCCAAATATCTCTTTTGATGATAGCGTTAGGGATAGAGGGAACGGCACATACACTTGGCATAGGGATTGTGACGGAAGATAAAGTTCTCGCCAACGTATTTGACACTCTCACAACCGAAAAAGGTGGCATACACCCGAAGGAAGCCGCTGAACACCATGCAAAACTCTTAAGACCCCTTCTAAAAAAAGCCCTCAAAGAGGCTAAGATTAGCATAGGGGATGTAGATTTAATTGCTTTCTCCCAGGGGCCGGGTTTAGGGCCGGCTTTGAGGGTTGTGGCAACTGCCGCAAGGGCCTTAGCTATAGGATACAACAAACCAATTGTTGGAGTCAATCACTGCATCGCCCACGTGGAAATTACAAAGATGTTCGGAGTAAAAGACCCTGTTGGTCTTTACGTAAGCGGGGGCAACACTCAAGTGCTGGCTTTGGAGGGCGGGAGATACAGGGTTTTTGGAGAAACCCTCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTCAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 7 1896369-1896813 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012200.1 Thermococcus sp. 2319x1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1896369 30 100.0 38 .............................. TCAACGTACACACTCACGCCGTTCAAAGTATTCCCGAG 1896437 30 100.0 39 .............................. GCGGTGGCGGAGGGAGAGCTGTTCAAGTATATCCGCAGA 1896506 30 100.0 38 .............................. GCAATGGTGATGGTGAAATTGAAGGAGGGAGATTGCCA 1896574 30 100.0 41 .............................. ATCAAGTAGTTCACGACGTTACCCCTTCTCCTCTTTCCAAA 1896645 30 100.0 40 .............................. TGGTGTCAAGGTCGATCATAAGAATGTTGCCCTTTTCCAT 1896715 30 100.0 38 .............................. TACTCCTTAAACGCCTCGAGAACCTTTCTCACGGGGCA 1896783 30 96.7 0 .........................T.... | A [1896808] ========== ====== ====== ====== ============================== ========================================= ================== 7 30 99.5 39 GTTCCAATAAGACTTCAAAAGAATTGAAAG # Left flank : TGGGGCTAAGGAGTGAAGCGAGGTTTTCCCGGCTCCCGTTGTGGATCCTGATTTTCCAATTTTTCTCATTTCAGTGGCCTTGTTTTCAAATCAAACTTCCCACAACGTTCTGGATGTCTTTAGTAACTAAAGGTTATTATTGGACAAAGAGTTATGATATTTTGAGGTTTTTGTAACGAAATTTTTTCGGGTTTTTGAGCGAAGGCTTCTCAGGAATTCTTTAATGTCCTCTCCTCGCGGAAATTCGACCATTTTTAGTTTAAAGTGTTTTTATTAGTCTATTTTTGATTTTAGCCTTTGTTCTGTCTCTGGAAGTCCCATGAACAAGACTGGACATGGGAGAAAAAGAGTAAGTTCAGACGAGCGAGTGTTTTAGAGTCTTTCTTAATGGCTCGAATTCGAGCTTTTTGAGGGGAGTTTTATCAACCCTTTGACGAAAAGCTTATAAGATTCAAGCCATCTAATTACTTTGCAAGGAATTTCAAGGAAAATTCACCCCT # Right flank : GAGCCTTAGTTTGGGTAGCAAAGCTAAGTTAGGATATCGCCAAGTCTATCTTCTTCGATCGCCTGCCTTATCTCTCTGGCAATTCTCCTTCCAGTGCTCATTGGCTCGTTGTATCTGAGCCATGTGTATGGGGAGCCGTTTATGAAGGGATTCGTTCCGGCAACGATTCTCGCTGAGATTTCAAAGACCACGAATTCCATGTCCTCCGTGATAACTCCCTCAAGGCAGAAAGGCCCCCAAAGTCCCCCCATAAGCTTTTCTGACGCTTTTACCACCCTCTCTCCAGCCTCGATTATATCCATGAGCAGGCTTTCTCTGAGCACTATTGGAATGTTCCCCACAACTGTGTAGCTCGTCTCCACCCCGATTTCAAGCTGCTGCTCTGCGCTTATCCTTCCTATCGCATCTGCGTTGCTTTCGTATCTCTTATCTATACTCATGAGCTCAAGCTCTTTGTTGAGCTTCGAGTAGAAGAAGTGCGGGTAAACGGGAACGCCTAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTCAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], //