Array 1 310413-309284 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSRA01000002.1 Pseudomonas aeruginosa strain DUN-009B IPC1014_2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 310412 29 100.0 32 ............................. TCGACCCACTCGCGGCCGCTGCATGACATTTG 310351 29 100.0 32 ............................. GCATATTCCATGGCTTCCAGGTCAGTTTGTAC 310290 29 96.6 33 ............................T ACTGAGTACGCAGAGGTCGGAAAGCGCGTCGTT 310228 29 100.0 32 ............................. CAGAGGCGCAACTCGATATCTTTCGAGACGCC 310167 29 100.0 32 ............................. CCTGATGCCTGGGTTCAGAAGCGCATCGACCA 310106 29 100.0 32 ............................. ACCGGCCAGGTGCTCGAGCGCGAGCAACTGCG 310045 29 100.0 33 ............................. GGCACCATCGGCGCCATTGACCGCGCGCTGAAG 309983 29 100.0 32 ............................. ACTTGACCGGGCCGAACTCCATTGCCTCCTTG 309922 29 100.0 32 ............................. GATGGCAACCGGCGTTTGTCCGCGCTGAACTG 309861 29 96.6 32 ............................A GCCGCTGAGCAGCACCTACCGGCACCTGAAGA 309800 29 100.0 32 ............................. GTAAAACTCGGCGATGCGATCCGCGAAGTCGC 309739 29 100.0 32 ............................. CCGACAAGGTGGCGAAAATCGCTGCTGAGTAC 309678 29 100.0 32 ............................. TCACGATCACTGCTGAGAACCCCAACCACACC 309617 29 100.0 32 ............................. CATCTGGCCGGGGCTCGGGTCTGGTTCTACGA 309556 29 100.0 32 ............................. TAGTAGAAGGGGCTAAACCCAACTGGTCAGGT 309495 29 100.0 32 ............................. GTGTTCAGCCTTGCACCGAACACCGTTAGCAA 309434 29 100.0 32 ............................. AGGCCCGCATCCGCGAGCTGATCGCCGCCGGC 309373 29 100.0 32 ............................. AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 309312 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 320469-319584 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSRA01000002.1 Pseudomonas aeruginosa strain DUN-009B IPC1014_2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 320468 29 100.0 32 ............................. ATCGGCGCAGCCGGCTTCGATCAATGGCTTTC 320407 29 100.0 32 ............................. ATCGTCGAAGTTCTGGAGTTCATTGGTAACGC 320346 29 100.0 33 ............................. GAGTTCCATATCAGTACCCTACGCTTTACGCGC 320284 29 100.0 32 ............................. ATATCGCTGACGCTTTGTGGCGCATTGGCAAC 320223 29 100.0 32 ............................. GCATCGAGACCGCTCTGTCCGCCGCTCAGCTC 320162 29 100.0 32 ............................. ACCGTAAGCTTCGCCGAGATGATCGCTGTTCA 320101 29 100.0 32 ............................. GTGCTCGTGCCGGACGCCACTGGCGAGGTCAC 320040 29 100.0 32 ............................. CATCCGAGGGATTCACCAGCCAGGCCATCATC 319979 29 100.0 32 ............................. GACCGCAGTTGATCGAGCCTCAGCGCTCGGCC 319918 29 100.0 33 ............................. TCTTGGCGGGGCATTGTGCAGTGGATTGCCGAT 319856 29 100.0 32 ............................. CAGACCAAGGCGCCGCCGCTGATCGTGCCAGC 319795 29 100.0 32 ............................. CTCGCGGACAACACCCCGAACCCCTACGTCGG 319734 29 100.0 32 ............................. ATGGAAGACCCAACCCGCGGCCAGGGGTGGGG 319673 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 319612 28 79.3 0 A..........A..C.....-..A....T | C [319603] ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.9 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAACATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //