Array 1 107935-106500 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYE01000001.1 Salmonella enterica subsp. enterica serovar Meleagridis strain 03-0344 NODE_1_length_557936_cov_3.31868, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 107934 29 100.0 32 ............................. TTACTTGATGTTGCCATAGAAGAATCTGACCC 107873 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 107812 29 100.0 32 ............................. TCATCCGTGTTGACAATAATACTGGTTATACC 107751 29 100.0 32 ............................. TACCCGCCTTTTATTTCGCTATATCAAAGGGG 107690 29 100.0 32 ............................. GCCGCGATTTGCTGCGCCTCCGGTACGGCAAC 107629 29 100.0 32 ............................. AAAATCACCAGATCCGGGCGCAAGGGCGCCGC 107568 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 107507 29 100.0 32 ............................. TTCTTTACAAAGAAGAGGGCTACCCGGTTGCG 107446 29 100.0 32 ............................. TTGTGACTTTGATAGTGATTGAAAGCACCTGT 107385 29 100.0 32 ............................. TGAGTTGCGCTTCATACGCTCTTTTTGCTCTG 107324 29 100.0 32 ............................. ATGCGTAGTCCAGCAGCTGCGCGGCGGCGTTT 107263 29 100.0 32 ............................. CCCATCCCCAGAATTTACCGATATGCTCCACA 107202 29 100.0 33 ............................. GGCCTAGGTGATCCGTTGGCGTGGAACGTTAGC 107140 29 100.0 32 ............................. AAAAAAGGGAAAAAGGGGGGGCTGTTTCTCCT 107079 29 100.0 32 ............................. CCATCCGAAAAAGCCGCGTTTACGCCGATGTT 107018 29 100.0 32 ............................. GTTTATAAAAAACACTCGCAAACAAGATGATT 106957 29 100.0 32 ............................. CTCTCAAATGCCTGCCACATCACGCGCGACGC 106896 29 100.0 32 ............................. CTGGGAACCCACTTCATCGGAGCGGCTTCACC 106835 29 100.0 33 ............................. CCGTATTGAGGCGCTATTCCGTGCTGTGCCGCC 106773 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 106712 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 106651 29 100.0 32 ............................. TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 106590 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 106529 29 100.0 0 ............................. | A [106502] ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125683-124191 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYE01000001.1 Salmonella enterica subsp. enterica serovar Meleagridis strain 03-0344 NODE_1_length_557936_cov_3.31868, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125682 29 100.0 32 ............................. CATGCGTATATCTGGACGGAAACGAACTGGTT 125621 29 100.0 32 ............................. ACACCCCGACTGTAGATGAAATTCCCGTCGTT 125560 29 100.0 32 ............................. CTTACCGCAGAACCGTACATGCGGCTCATTTC 125499 29 100.0 32 ............................. GTAATTCCTCGCCGTAAACGTAACGGAAATAC 125438 29 100.0 32 ............................. ATCAACGATGCCAAACTCGGTGGCGATTGGCA 125377 29 100.0 32 ............................. GCCGCGAAATCGCAGCGCCGCATGACGACTCT 125316 29 100.0 32 ............................. TAATATTCTTATCCAATATTTTATTGCTTGAG 125255 29 100.0 32 ............................. TAGATAGTGAACTTTATGAAGAAGTAATGAAG 125194 29 100.0 32 ............................. GGGATGTCACAATGATAAGGCGTTTTCCGTTA 125133 29 100.0 32 ............................. GCGGATAATTCAACAGCGTTGGGCTATAGCAC 125072 29 100.0 32 ............................. GTTGAAATCTTGGCCGCAGCGGAGGAAATGGG 125011 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 124950 29 100.0 32 ............................. AAATTTGGCTTGATGCCGCAAACAAAGAACTT 124889 29 100.0 32 ............................. AACTGCTTAAATCAAAAGGACTTCACTAATGA 124828 29 100.0 32 ............................. CCCGTGTGCCCTTTACCCTTGCCGTAGTCCAA 124767 29 100.0 32 ............................. ACATTGATTGATACGTGTATCAATCGCTGGTC 124706 29 100.0 32 ............................. TCGCGGATTTTCTTAAACGCAGCAATAATATT 124645 29 100.0 32 ............................. AGTTCAGTCCAGTTAACGCTGAACGGCGAACC 124584 29 100.0 32 ............................. ATCGTTGTCGTTCGTGTTGCTGAGGGTGCGAA 124523 29 100.0 32 ............................. GGGCCCCCACGATTTAGCCTTTGACAATTATA 124462 29 100.0 32 ............................. GAAAGCTACGACTTACCAGACTGAAGCCATAA 124401 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 124340 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 124279 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 124218 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTAGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //