Array 1 163042-160511 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLM01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712454, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163041 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162980 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 162919 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 162858 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 162797 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162736 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162675 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162614 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162553 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162492 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162431 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162370 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162309 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162248 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162187 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162126 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162065 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162004 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 161943 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 161882 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161821 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161760 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161699 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161638 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161577 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161516 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161455 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161394 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161333 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161272 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161211 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161150 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161089 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161028 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 160967 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 160906 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 160845 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160784 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160723 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160662 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160601 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160540 29 93.1 0 A...........T................ | A [160513] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181164-179549 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLM01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712454, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181163 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181102 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181041 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 180980 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 180919 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180858 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180797 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180736 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180675 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180614 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180553 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180492 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180431 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180370 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180309 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180248 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180187 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180126 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180065 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180003 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179942 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179881 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179820 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179759 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179698 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179637 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179576 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //