Array 1 94-548 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSMD01000140.1 Escherichia coli strain 44 E11_S2_L001_R1_001_(paired)_contig_140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94 29 96.6 32 .....................C....... ACGTGGTCATGGCTGCTGCTGTTTCAGCGCCA 155 29 100.0 32 ............................. GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT 216 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 277 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 338 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 399 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 460 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 521 28 93.1 0 .A..........................- | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGTGCTCGCTTGCAGACGCATCTGCTCACCTTTACGTTCGTCGGACGCGTCAGATTGGTATACGTGACAGGCATTACCGCTCACCCACGTTCCG # Right flank : | # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-393 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSMD01000016.1 Escherichia coli strain 44 E11_S2_L001_R1_001_(paired)_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... AACATTAAATTGCCGTGCTGGATGAATCGCGG 60 29 100.0 32 ............................. GTCATCACGATGAATCAAAATTTCGCCCGGCT 121 29 100.0 32 ............................. CTTCTCCACCGTTTGGCGAATCGGTGTGAGGG 182 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 243 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 304 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 365 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //