Array 1 191399-193622 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAYW01000010.1 Erwinia amylovora NBRC 12687 = CFBP 1232 strain NBRC 12687, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 191399 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 191460 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 191521 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 191582 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 191643 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 191704 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 191765 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 191826 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 191887 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 191948 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 192009 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 192070 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 192131 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 192192 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 192253 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 192314 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 192375 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 192436 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 192497 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 192558 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 192619 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 192680 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 192741 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 192802 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 192863 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 192924 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 192985 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 193046 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 193107 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 193168 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 193229 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 193290 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 193351 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 193412 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 193473 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 193534 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 193595 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.3 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 204530-206635 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAYW01000010.1 Erwinia amylovora NBRC 12687 = CFBP 1232 strain NBRC 12687, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 204530 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 204591 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 204652 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 204713 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 204774 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 204835 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 204896 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 204958 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 205019 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 205080 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 205141 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 205202 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 205263 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 205324 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 205385 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 205446 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 205507 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 205568 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 205629 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 205691 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 205752 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 205813 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 205874 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 205935 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 205996 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 206058 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 206119 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 206180 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 206241 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 206302 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 206363 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 206424 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 206485 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 206546 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 206607 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 216099-216427 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAYW01000010.1 Erwinia amylovora NBRC 12687 = CFBP 1232 strain NBRC 12687, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 216099 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 216159 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 216219 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 216279 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 216339 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 216400 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTTCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //