Array 1 108778-105817 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEN010000002.1 Salmonella enterica strain CR25 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108777 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 108716 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 108655 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 108594 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 108533 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 108472 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 108411 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 108350 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 108289 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 108228 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 108167 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 108106 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 108045 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 107984 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 107923 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 107862 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 107801 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 107740 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 107679 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 107618 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 107557 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 107496 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 107434 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 107373 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 107312 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 107251 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 107190 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 107129 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 107068 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 107007 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 106946 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 106885 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 106824 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 106763 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 106702 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 106641 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 106580 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 106518 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 106457 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 106396 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 106335 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 106274 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 106213 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 106152 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 106091 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 106030 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 105968 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 105907 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 105846 29 96.6 0 ............T................ | A [105819] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126410-125037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEN010000002.1 Salmonella enterica strain CR25 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126409 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 126348 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 126287 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 126226 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 126165 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 126104 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 126042 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 125981 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 125920 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 125859 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 125798 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 125737 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 125676 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 125614 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 125553 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 125492 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 125430 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 125369 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 125308 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 125247 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 125186 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 125125 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 125064 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //