Array 1 6003-4038 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKM01000049.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 6002 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 5941 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 5880 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 5819 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 5758 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 5697 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 5636 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 5574 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 5513 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 5452 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 5391 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 5330 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 5269 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 5208 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 5147 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 5086 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 5025 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 4964 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 4903 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 4842 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 4781 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 4719 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 4616 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 4555 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 4494 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 4433 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 4372 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 4311 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 4250 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 4189 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 4128 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 4067 29 96.6 0 A............................ | A [4040] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23627-22134 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKM01000049.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23626 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 23565 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 23504 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 23443 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 23382 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 23321 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 23260 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 23199 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 23138 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 23077 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 23016 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 22955 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 22894 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 22833 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 22772 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 22711 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 22649 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 22588 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 22527 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 22466 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 22405 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 22344 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 22283 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 22222 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 22161 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //