Array 1 19-187 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSJE01000083.1 Streptococcus sp. CCH8-G7 CCH8-G7_contig83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 19 37 100.0 29 ..................................... TGCAAGGAAGTCAAAGCGGTTACCGTTTA 85 37 100.0 29 ..................................... TGATAAAGTCAATCATGACTTTAAGGTTA 151 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 99.1 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACT # Left flank : TTAATATTATCAATGAACG # Right flank : AACTACCAAATACACGTT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 104904-105335 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSJE01000009.1 Streptococcus sp. CCH8-G7 CCH8-G7_contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 104904 36 100.0 30 .................................... AACCTCTTCACGCTGGGCCAGTGTATCTTT 104970 36 100.0 30 .................................... TCAGTGCAGCATTGAAACCACTTAATGATG 105036 36 100.0 30 .................................... CAGATACGACTTGACCAAGTTGCACCGTTG 105102 36 100.0 30 .................................... AATCTGGATCAATTGAGCAGGATGCTGATA 105168 36 100.0 30 .................................... CTTCTTCAGTATCAGAATGAAGTAGTTCTT 105234 36 100.0 30 .................................... TGATTGACCTTCAAGATGGCGGATTTGCCG 105300 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTCAATGACAAACCCGAAGTCAAATCCATGATTGAAAAGCTGGTAGCTACGATTACAGAATTACTGGCATTTGAGTGCTTGGAAAATGAATTGGACTTGGAGTACGACGAAATCACCATTCTAGAGTTGATCGATGCTCTAGGGGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAAGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTTTTCATCAATGCGACCGCTTATCTATCAAAGGATGAGTTGGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAGAGTCTTATTTGTCGAACCTCGAAAAGTCTATGATTTCCCTCAGTATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAATAACAATTGGAATCTAACGAGCAGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTAAGAAAAATTTTTCTACGAG # Right flank : AAACTACCAAATACACGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 142012-141844 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSJE01000028.1 Streptococcus sp. CCH8-G7 CCH8-G7_contig28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 142011 36 100.0 30 .................................... AAGATTGATGCTGTCAGCACTAAGGTTACT 141945 36 100.0 30 .................................... AGGAGCTTGCTGTGCTTCTGCATACTGCCT 141879 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TACACGTTCTATCCGTAA # Right flank : AATATTAAGTTTTAATTCAATTCGACCATACTAGTTCAAGGTTGGTGAGGGAGTTTGTGTTATTTGCAAAGAATTTAAAAAGGTTTGTTAAAATTGTTGACAACCACGGAGAACCCCGATACGATATAATCAGAAAGGAAGAAGATATGAAGATATGAGAGGTTGCCAAATTAATGGAATCAACTGTAAATCTGTTAACAGGTGTTGCCAGTGTTTCCATGGCAATAAAAAAGAGCCAAAAGAATGTAAGTGACGCAAAGATAAACAGTTCAAGTAAGGCTCTGGTAGGTAGGGATGAAAGCCCCTTAGACCTTACCTCGACTATATCATATCAGATAGTACAATGAAATATTTACCAATTTTTACAATCGTATTTTTTGCTTTCTTGCTAATTTTAAAAGATAGACGGAAGTAACGATGGAGTTCAAATGAGAAAGCAGATAGAAAAGTTATTAAACAGCGATATAAGCACAGGCGCAATCGCTAAAGGAGCAGGCGTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 20-1771 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSJE01000029.1 Streptococcus sp. CCH8-G7 CCH8-G7_contig29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 .................................... TCAAACGGCTCAAGCATGTAGGGCCTCTTT 86 36 100.0 30 .................................... CAGGAAGGGTTTGGGCCAAGCGGACGTGAA 152 36 100.0 30 .................................... TACTTCTTACCGATACGCTCCATAGTAGAA 218 36 100.0 30 .................................... TAATTCTCTACGTATTTTATCGGCATCTTT 284 36 100.0 30 .................................... AATCCGCATTTCAAACCCGTTTGGGTCTCT 350 36 100.0 30 .................................... ATTTGCAACCTGATCAAAATTAGCGTTTTT 416 36 100.0 30 .................................... ACTTGGGCTCACAAAGTATGGAATTATGGA 482 36 100.0 30 .................................... AAAAGCTTATCATCAAAAACCTAATAGATA 548 36 100.0 30 .................................... GGTACAATTTGGTAGTTACGATAGAGTTAT 614 36 100.0 30 .................................... AAATATCCAGAATTGTCAAAGACAGTAGCG 680 36 100.0 30 .................................... ATAATTATGCACGAACGGTCATTAAGACTA 746 36 100.0 30 .................................... TTATGCAGCGTGGGCCTTTGGTGTTGGTGG 812 36 100.0 30 .................................... AGTTTACTAGCTCAAGGTTTGTTACCTTAG 878 36 100.0 30 .................................... AAAAGTACAATTTAAAAACCATAGCTGACG 944 36 100.0 30 .................................... TTGGTTGCATAGTTCAAGGTGTTTTCATCT 1010 36 100.0 30 .................................... CCATAAATGTCCATGATATTGCTTGTTTCA 1076 36 100.0 30 .................................... GTTAATGTGTTGTATTAAAATAGTTTTTGT 1142 36 100.0 30 .................................... TAAAGAGGAATTCACTTCTAGTAATTTAGG 1208 36 100.0 30 .................................... TTTAGTTCTGAGAAATCGTTTTGATTTGCG 1274 36 100.0 30 .................................... TTAAACAGGAGTTTTTTAAAGAGCATTATA 1340 36 100.0 30 .................................... TTCTGTTAACTTGCTAGCCACTTTTAAGCT 1406 36 100.0 30 .................................... TAAAAAGCTATCTTTTGTGTATGGTGGTTT 1472 36 100.0 30 .................................... TCCGTGAAGATAGCGACTTCTCCACCTTCC 1538 36 100.0 30 .................................... TTTAGAAGAGTTTAGGTAGAAAGGGAAAAC 1604 36 100.0 30 .................................... CTTACAACTCAATTCCTAAAGAATCAGCGG 1670 36 100.0 30 .................................... CAAATTTTTTATTCATCTTACTTTCTCCTT 1736 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TACACGTTCTATCCGTAATG # Right flank : AATTTAAAAGTCATGATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 518-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSJE01000079.1 Streptococcus sp. CCH8-G7 CCH8-G7_contig79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 517 36 100.0 30 .................................... ATTAAAAAGCTAAAAACACCCGAACCACCT 451 36 100.0 30 .................................... TGTAAAGTTTTTAATGTATATAATAGTAGA 385 36 100.0 30 .................................... GGATGATTTTGCTTTGATATTCTTAGCAAT 319 36 100.0 30 .................................... ACTGTTTGAGGTATATTATGCTTATGTATT 253 36 100.0 30 .................................... CGTTATCTTCTTCATTATTTTTTACTCCTT 187 36 100.0 30 .................................... ACATCGCAGAGATCGACGAAATCAATCGTA 121 36 100.0 30 .................................... CTCCGCCCTGAGCTTTTTTCTTACCATTGT 55 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CTCAATGCTAAAGAGCA # Right flank : CAATACCGCTACATTAATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //