Array 1 33-452 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635878.1 Actinomyces bouchesdurhonensis strain Marseille-P2825T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 33 36 100.0 28 .................................... AGCCGCCTGGATCGCCGTCATCCCCTCA 97 36 100.0 28 .................................... GCACCGCCGCGACGTGAACGAGATCGGA 161 36 100.0 28 .................................... CGACGAACCCATTGGCCTGATTACCTCG 225 36 100.0 28 .................................... CCTTGGCCCCGATACTATCGCCGCCCTC 289 36 100.0 28 .................................... GCTCAGATCTCGTTCACGTCGCGGCGGT 353 36 100.0 28 .................................... ATGTTCGGCTCGGTCCAATCCAAGCTTG 417 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 100.0 28 GCTGAGAATCAATCATCCATCCCCTTTGATATACTG # Left flank : ACTGTCATGACGAGGCGAACAAGATCAAGTTAG # Right flank : GAGGTCCTCGAGCGCGTCGAGGCGCTTCCGCTGAGAATCAATCNATCCTCGCTCCCCTGTCTGCCACAGGTTCCGTCGCCGACTGGGACAACCTCGTGGGCGCCCTCCAGGTGACGGGCCTCGCTCAACGCGTCGATCTGCGCCCCTCCGAACTCACCCGGTGGGAGCGGTTCAAGGCCCTCATCGCCCGCGCGATCGTGTCCGGCGCCGACGTGTTCCTCATCGAGGACCCCGTCTCCCTGCCCGCCGATGCGCGCGCCGAGTTCGAACCACTCCTACGCTCGCTCACCAACGCGGGCTGCGCTGTCGTCGTCTCAACAGCGTCCGCCGAGTTCGCCGCCTCCACGGACCGTGCGATTCTGCTCACGAACGGTCGGGTCGCCCTCGACGCGCCCGGCCCTTCGCAGGCCATCATCGCTGCTTCCCTCGAAGCCAACCCTGAGGATCCGAAGTCGATGCTCGCACTCCTCCCCTCCTCTCCTTCCGCCTTTGACGAGGTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGAGAATCAATCATCCATCCCCTTTGATATACTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 132067-129988 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635866.1 Actinomyces bouchesdurhonensis strain Marseille-P2825T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 132066 37 100.0 40 ..................................... CAAGAAGCCGCCCAAGTCCTCGCCAAAGCCGCCGCCTACG 131989 37 100.0 35 ..................................... AGGGGTTCGAGGCCGAGGGCGGCGCCGGTTTCGGC 131917 37 100.0 40 ..................................... TCGATGACCGGAACAACCGGGTAGTTGCTGTCAACGATGA 131840 37 100.0 37 ..................................... GTGCGACGATCAGGATAATCTGGTTCCCGATAGCGCT 131766 37 100.0 38 ..................................... ACGTAGGTCATCCAGTTGCGCTTCGCAAAGTCGAGGAG 131691 37 100.0 38 ..................................... TTGATGTAATTGGTCCAGGTGGTAATCGCTTGTCCATT 131616 37 94.6 37 ..........CA......................... CATGAGTGCGATGTCGTTGGTCGTGAAGATGAGCTGA 131542 37 100.0 41 ..................................... AGGTGAGAATAGTCAACGTAGACTTCGGGGTTGTTTACCGC 131464 37 100.0 38 ..................................... ATCTCACGGCTACTCGGCTGAACAGGAACCGTCACGGG 131389 37 100.0 38 ..................................... TTCCGTAACCTCGCGGGTGTCAGCGGTGGGCATTCTGA 131314 37 100.0 41 ..................................... TATTGGTTCCATGAGGCGAGTACGGCGTCGTATAGTTCTTC 131236 37 100.0 38 ..................................... GCGTTGCAATTTACCGTTGAGGAGGTCTTCAAGGGGGA 131161 37 100.0 40 ..................................... TGTGGGAACGATCACAGTACCGACCAGAACCAGCGCAACG 131084 37 100.0 43 ..................................... TTGGGAGCACTGACGAGCGCCTTGAACGTGTAGAATGTCACGT 131004 37 100.0 39 ..................................... TGGTTGCATCGCCTGCATATCGTGCGCCCGTTGTCGAGG 130928 37 100.0 42 ..................................... TTTATCAGCCAGGGCAAGTATTCCATTGTCAGATCTTATCCC 130849 37 100.0 39 ..................................... TTCTGAGTTCAATCTTCTCGTAACTGTGTGTTGTGTAAT 130773 37 100.0 39 ..................................... TTGTCTAAGCTGTCTGCTGTTGGCTCTGGCCTGATGTCA 130697 37 100.0 38 ..................................... CTTTACCTGCCCCGTTGCCAGTAACCACGAGGGTTTTC 130622 37 100.0 41 ..................................... GTGCTGAGCGACAATGACGCGCACGTCCCCGTTAATCATGG 130544 37 100.0 37 ..................................... AGACAGATCGTCCTGTGCGTGATTCTCACGGTATTCA 130470 37 100.0 37 ..................................... GCGTGTGCGTTACGCAGGTAGAGAAGCTCCTCTTCGT 130396 37 100.0 36 ..................................... AGGTACAGGAGTTCGGCGTCTGGTCCGGCGGCGATG 130323 37 100.0 37 ..................................... TCTACAAGGATCGACACACTCACATCCACCGCAGCAG 130249 37 100.0 36 ..................................... CGGGGCCCGTGGTGACGGTCGGGCGGGTGACGGTCG 130176 37 100.0 40 ..................................... CGGCAGCGTGTGAACCGCGTCACATGTTGGTTGTTCAGAA 130099 37 100.0 38 ..................................... GAGAGGGGGGTTGAGCGTCGGGAGGGCAGGTTACCCCT 130024 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 28 37 99.8 39 GTCAGAAAGCACCGAGCGCCATAAGGTGCATTAAGAC # Left flank : CATAAGGTGCATTAAGACGAATCTTGACAAGCGTTCGGATGAAGCTGTCATCGAGATGTCAGAAAGCACCGAGCGCCATAAGGTGCATTAAGACCTGCCCATAGCAGCACAGACACGATTGATGAGAGTCAGAAAGCACCGAGCGCCATAAGGTGCATTAAGACGGCTGGTCGCCTTTTCCCACCAGTCAATAAGCCCGGTGTCAGAAAGCACCGAGCGCCATAAGGTGCATTAAGACAATTTCTTCAGGGATGCCCTTGCGGTCTGTTTCTGCGAAGTCAGAAAGCACCGAGCGCCATAAGGTGCATTAAGACGGCGNTACGCGTCTGGGACAAGCCCACATTCACCCCCGCCATGATCGCCGCGCGATCCCAGGCACCAAGCATCCGACGACACCCCATGATCAGCCTCCAAACAGCATCACCACTACAGGAAATTGCTTACACCCTATGACACCGCCGCGTCTACCAGATCGAGAGCTGGGAAGAGTCTGATGACGG # Right flank : GGACTCGAACCTGCGGTGTGTCGTTAACTGGGCGGTGTCATAGGGTGTAAGCAATTTTCGTGTAGCGGTGATGCTGTTTGGAGGCTGATCATGGGGTGTCGTCGGATGCTTGGTGCCTGGGATCGCGCGGCGATCATGGCGGGGGGGAATGTGGGCTTGTCCAAGACGCGGATCGCCCACTTGATTGGGCGTAGCCCCTCGGTGGTGTGCCGTGAGATCGCCCGCCATACGGGCCCTGATGGGCAGTATCGGGCCGAGGAAGCCGGCAAGGCGGCCCGCGCGGCCAGGCGTCGCCCGAAGAAGCGCCTGTTGGATTGCGACGAGGTCCTTCGCCGCCGTGTGATCGCTGATTTGTCCCAGGGGCACACTCCCCGCCAGATCAGCGGGCGCCTGCGCGCCGAAGCGTGTGGCACACTGCCCTCCATGGATACTTCCCCCGACGCCCAGGGTCACACGATCAGCCATGAGGCGATCTACACGTGGATCTACGCCCACCCCAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCGAGCGCCATAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 133787-132253 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635866.1 Actinomyces bouchesdurhonensis strain Marseille-P2825T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 133786 37 100.0 41 ..................................... GCCGCAGCCTTCCATGTACCAACATACCCGTAGAGCCACCC 133708 37 100.0 38 ..................................... CTAAGCCGACCCCGGAGCCGAGCACCCCGCCTGCTCCT 133633 37 100.0 36 ..................................... ACGCAAGAATCTTCCGTGCGTAGTCCGACAGTGCGC 133560 37 100.0 36 ..................................... TCGTTGACCGCTCGCCGAATGTTCTTGCCCTCCTCT 133487 37 100.0 36 ..................................... TACATAGACTTAGCAGCACCACGCGCAACAATCAAG 133414 37 100.0 36 ..................................... GCATCGCCTCCCAGACCTTACGGTCGAACTCGGCCA 133341 37 100.0 40 ..................................... CTGGATGACCCCGTCAGTGGAAACCTTGTAAGTCTCACCG 133264 37 100.0 38 ..................................... AGGACGAACGGGAAGTCTGCCTGCCACTTGAAGCCACC 133189 37 100.0 36 ..................................... GACGTGAGCGCCGACAGGAGCGGCGGGACAATCGCC 133116 37 100.0 39 ..................................... CTGTCTCCTCCTTGATGAGGCGCAGATCCTTGGGTCTCG 133040 37 100.0 39 ..................................... GAGAAAATGCCGTCACCATCGGTATCCTCGCGGAAATTG 132964 37 100.0 38 ..................................... CCATAAAGCTAGAGTTCATAGCTGCGCCAGCGTTCTGG 132889 37 100.0 40 ..................................... TTTGTGAGCTCGACGATGTCAAAATCGCCAGCGTGATCAC 132812 37 100.0 40 ..................................... CGACAGAGATGGATGCAGTGAAAGACCGCGAGGCTAGGGC 132735 37 100.0 36 ..................................... TTGTCAACCCCACGCTGTTGTAATATCGGTCACATG 132662 37 100.0 40 ..................................... CGCACGATACCGTTGTTCACTCGCTTGTCGTTGACGATGC 132585 37 100.0 39 ..................................... GAATCTTGACAAGCGTTCGGATGAAGCTGTCATCGAGAT 132509 37 100.0 33 ..................................... CTGCCCATAGCAGCACAGACACGATTGATGAGA 132439 37 100.0 37 ..................................... GGCTGGTCGCCTTTTCCCACCAGTCAATAAGCCCGGT 132365 37 100.0 39 ..................................... AATTTCTTCAGGGATGCCCTTGCGGTCTGTTTCTGCGAA 132289 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 21 37 100.0 38 GTCAGAAAGCACCGAGCGCCATAAGGTGCATTAAGAC # Left flank : CGTGCTCGATGAGCGTCTTCTTGGGGTGGGCGTAGATCCACGTGTAGATCGCCTCGTGGCTGATCGTGTGACCCTGGGCGTCGGGAGAAGTATCCATGGAGGGCAGTGTGCCACACGCCTCCTCACGCAAGCGCCCGCTGATCTGGCGGGGAGTGTGCCCCTGGGACAAATCAGCAATCACACGGCGGCGAAGGACCTCGTCACAATCCAACAGGCGCTTCTTCGGGCGACGCCTGGCCGCGCGGGCCGCCTTGTCGGCCTCCTCGGCCCGATACTGCCCGTCAGGGCCCGTATGGCGGGCGATCTCACGGCACACCACCGAGGGGCTACGCCCAATCAAGTGGGCGATCCGCGTCTGGGACAAGCCCACATTCACCCCCGCCATGATCGCCGCGCGATCCCAGGCACCAAGCATCCGACGACACCCCATGATCAGCCTCCAAACAGCATCACCGCTACACGAAAATTGCTTACACCCTATGACACCGCCCCCTTACCGA # Right flank : GGCGNTACGCGTCTGGGACAAGCCCACATTCACCCCCGCCATGATCGCCGCGCGATCCCAGGCACCAAGCATCCGACGACACCCCATGATCAGCCTCCAAACAGCATCACCACTACAGGAAATTGCTTACACCCTATGACACCGCCGCGTCTACCAGATCGAGAGCTGGGAAGAGTCTGATGACGGGTCAGAAAGCACCGAGCGCCATAAGGTGCATTAAGACCAAGAAGCCGCCCAAGTCCTCGCCAAAGCCGCCGCCTACGGTCAGAAAGCACCGAGCGCCATAAGGTGCATTAAGACAGGGGTTCGAGGCCGAGGGCGGCGCCGGTTTCGGCGTCAGAAAGCACCGAGCGCCATAAGGTGCATTAAGACTCGATGACCGGAACAACCGGGTAGTTGCTGTCAACGATGAGTCAGAAAGCACCGAGCGCCATAAGGTGCATTAAGACGTGCGACGATCAGGATAATCTGGTTCCCGATAGCGCTGTCAGAAAGCACCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCGAGCGCCATAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 3 134954-134312 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635866.1 Actinomyces bouchesdurhonensis strain Marseille-P2825T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 134953 37 100.0 40 ..................................... TTCCATCGACACAGCCACCTCATCAGCAAGCGCTGTCAAC 134876 37 100.0 42 ..................................... CGCTCGACATGGCCGCCACCACCCGTGGCGGCTTCCCCACTG 134797 37 100.0 38 ..................................... CGTTGACCACTTGATTTTCTCTTTCCTCTTGTACGCGT 134722 37 100.0 40 ..................................... GCATGTCGTCCAGGGAGTAGACGAGGCCTTTGCAGGACTT 134645 37 100.0 38 ..................................... GTCACGAGACGAGCATCGCCCCATCGTCCCAAACGCGT 134570 37 100.0 38 ..................................... GCTCCGGCGGCCTTGTGGACGTCCACGTGTCCGACGTA 134495 37 100.0 38 ..................................... CGCATGAGCTTGCGCTCCTCAGGATCGTCGAAATCCGA 134420 37 100.0 35 ..................................... TCTCCTGCCTCGAACGTTACGTCCGAGATGTACTG 134348 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 9 37 100.0 39 GTCAGAAAGCACCGAGCGCCATAAGGTGCATTAAGAC # Left flank : GCTTATGCGGATCCGTCGGTGTCTGTTGGGTCGTTGGCGTATCCGGTTGTGGATCCTCGCTTCACGTACGTGCGTAAGGGTGCGGCTCCTGTGGTTGAGTACTTGGGTATTCAAGAGAATCCGAATCATACGGGTTGGGCCGCTGCCCGCGGGTATGGGAATGATCTGGTAGCCATGTTGAACGCGTACTTCTAGGGGGTTTGTTTTCCGTCACGAGGCCGGGGTTCGTCGCGCTGTGAGGTGTGGTGGGCCCCGGCGTCTGTGTGTGGCGTTTCTGGTGGTTGTGGCGGGTGTGCGTTGGTTGCGGCGCGAAACGCCGACGTTGGTGTGAGTTTCCGGCGTGTTCCGCGCTGTTTTGGTTGTCCGTGGCGATGCGCCGTATTGCAACGAAAAGTCTGCTAATCTGGCAGCGTGCTTGTTGGTCGGAGGGGTGCTTTTTCGGCCACTGGCGATCCAAGGCACTGTTTCCCCTGGTCACAGGCGGTGCGACACGCCGGGCA # Right flank : GGGTTTTAGCCCGACGNGCAAATGCCGTGCTCGATGAGCGTCTTCTTGGGGTGGGCGTAGATCCACGTGTAGATCGCCTCGTGGCTGATCGTGTGACCCTGGGCGTCGGGAGAAGTATCCATGGAGGGCAGTGTGCCACACGCCTCCTCACGCAAGCGCCCGCTGATCTGGCGGGGAGTGTGCCCCTGGGACAAATCAGCAATCACACGGCGGCGAAGGACCTCGTCACAATCCAACAGGCGCTTCTTCGGGCGACGCCTGGCCGCGCGGGCCGCCTTGTCGGCCTCCTCGGCCCGATACTGCCCGTCAGGGCCCGTATGGCGGGCGATCTCACGGCACACCACCGAGGGGCTACGCCCAATCAAGTGGGCGATCCGCGTCTGGGACAAGCCCACATTCACCCCCGCCATGATCGCCGCGCGATCCCAGGCACCAAGCATCCGACGACACCCCATGATCAGCCTCCAAACAGCATCACCGCTACACGAAAATTGCTTACA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCGAGCGCCATAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 58616-64609 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635869.1 Actinomyces bouchesdurhonensis strain Marseille-P2825T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 58616 36 100.0 28 .................................... TCGCAGGTGACGCAGGTCGTTGGGTTGC 58680 36 100.0 28 .................................... GATGCGCGCACGCGGCGGCGTCACCATC 58744 36 100.0 28 .................................... GGCCGGGCGTCGAGACGACGGTGGGCAG 58808 36 100.0 28 .................................... CGTATTCTGTGGGGTGAGCGCGGTTACG 58872 36 100.0 28 .................................... AGAGCCGACCCTCACCATGACTTTCCGC 58936 36 100.0 28 .................................... GGAAGCGCCTCGACGCGCTCGAGGACCT 59000 36 100.0 28 .................................... CAAGCTTGGATTGGACCGAGCCGAACAT 59064 36 100.0 28 .................................... TGAGGGGATGACGGCGATCCAGGCGGCT 59128 36 100.0 28 .................................... TAACTTGATCTTGTTCGCCTCGTCATGA 59192 36 100.0 28 .................................... TAATGGGGGCGCTACTAGCGCAACCGCG 59256 36 100.0 28 .................................... CACCACCGACACCCCTACTGAAGGAGAC 59320 36 100.0 28 .................................... AGATCGTGCAGATCAACGGTACCACCCT 59384 36 100.0 28 .................................... TAGTGTTGTGTTGCGCCATGCTTTCATA 59448 36 100.0 28 .................................... CCGCTGCGCGGTCGAACGCTGATGAGAG 59512 36 100.0 28 .................................... ACGGGGGCGGCGTGCAGGTGGTGATCCC 59576 36 100.0 28 .................................... CGCACCGCGAGCACGACGGGGGGTTCAG 59640 36 100.0 28 .................................... GCCACCCCGCAGGGGTTCCAGGCGTGGG 59704 36 100.0 28 .................................... CCTCGGACAGCCAGCCCACGTCGACCAT 59768 36 100.0 28 .................................... CCTTCGCGGCGAGCTGCTCGAGGCTCGT 59832 36 100.0 28 .................................... CGAACTCAATCACACGCATGTTCGCGGC 59896 36 100.0 28 .................................... CATTGGTAAGTACACCGCGCTCGTTGAT 59960 36 100.0 28 .................................... GCAATCCCCATGGGCGCTGTGAACGTCG 60024 36 100.0 28 .................................... CTCCGCATCGCGGACCTGACCCGCGCCT 60088 36 100.0 28 .................................... GTCAGCAAGGATCGCCTCCGCAGCATTT 60152 36 100.0 28 .................................... CGTCGCGGCGAAGGCTCCCGTTCAGGTC 60216 36 100.0 28 .................................... AGACACGAAGGTTCGCGCTATCGTCGGT 60280 36 100.0 28 .................................... TGTGGGGCGTCAACGCGACCGCGCAACA 60344 36 100.0 28 .................................... CGGTTGCCCACCGCTTGGTCAGGACCCA 60408 36 100.0 28 .................................... CTGCGGAGTGGCTACCCGTGGTCCCCAG 60472 36 100.0 28 .................................... ACCCGCCGCGCCACACGATGCCGTCATC 60536 36 100.0 28 .................................... CGTACTTGCCAACATGGCGCAACATGTC 60600 36 100.0 28 .................................... CGTGCGTCGCGCGCTCTACGCGCTGTGC 60664 36 100.0 28 .................................... ATGGGAGCATCCTCCACAACCCAGCCGA 60728 36 100.0 28 .................................... CGCCGTGCGGTCGCCGTGGCACGCGCGC 60792 36 100.0 29 .................................... GTTGCCGCGTGGTCAGGGAACCTCGGGCG 60857 36 100.0 28 .................................... TGTCGGTCTTCTTTCGTGTTTGGGGGTG 60921 36 100.0 28 .................................... GGCGCGGACGTGTCCTCCTTTATGGGGG 60985 36 100.0 28 .................................... CCGCCCCGGTAGCCGACGTACCTGTGAG 61049 36 100.0 28 .................................... TAGGGTACACATCCTTGTCGAACGCAGC 61113 36 100.0 28 .................................... TTTGATCTTGTGACTACAGTCTATCGGA 61177 36 100.0 28 .................................... ATCGGCCTCCCATGCTGCACGTGATCCG 61241 36 100.0 28 .................................... CGCGCCGCGCTGGGCATCACACGTTTGG 61305 36 100.0 28 .................................... CAACGCCTCGTAGCAGGGCAGGAGGACT 61369 36 100.0 28 .................................... TGGCCTCCCCAGGGTTGTCGAGGCGCTG 61433 36 100.0 28 .................................... CGTAGCACGCGCGCTCTACGCGCTGTGC 61497 36 100.0 28 .................................... TCGCGAGGCCGTCCTCGAACTGGACGTG 61561 36 100.0 28 .................................... GCGTCCAGGTGTGTGGCCTGTATCCGTT 61625 36 100.0 28 .................................... TACCAGTTGTGTTGGTCGAGTAGTTCTT 61689 36 100.0 28 .................................... TACTGAGTTCAATGCAGGCGATGTCTAT 61753 36 100.0 28 .................................... ACCGGCGTCTGCGCGCGCGACCACGTGC 61817 36 100.0 28 .................................... ACCTGCGCGACGACCTTGACACGCTAGC 61881 36 100.0 28 .................................... GATCCTGCGCGCGACCCCCGCCGCGCGC 61945 36 100.0 28 .................................... GGTCGCGCCGTCGTAGGCAGGGAAGGGA 62009 36 100.0 28 .................................... CGACCTGGCCTGCCGTCGAGGTCACAAT 62073 36 100.0 28 .................................... CGACCTGGCCTGCCGTCGAGGTCACAAT 62137 36 100.0 28 .................................... GGGGCGTGCCCTTGCCGATCTCCCACGA 62201 36 100.0 28 .................................... CCGTCGCACTGCCACTCAAAGTCGAAGG 62265 36 100.0 28 .................................... CCGCCCCGGTGGCCGACGTACTTGTGTG 62329 36 100.0 28 .................................... CGACGGCGATCGCGCGCGTGGTCCGCCT 62393 36 100.0 28 .................................... CTCGTCCCGATCCACAACGCACAGGCAG 62457 36 100.0 28 .................................... GGGACGCCGCGCTCACGCAGCGCTTCGG 62521 36 100.0 28 .................................... CGCCGTCCGATCGCCGTGCGCCGCGCGT 62585 36 100.0 28 .................................... CTGCCCTGTCGCCTCACCCTCGCACACA 62649 36 100.0 28 .................................... GGTGCCACGCTTCCCCGCGCGCTTCCTT 62713 36 100.0 28 .................................... TGCGTCCCATTTAGCCGCGTGGTTATTG 62777 36 100.0 28 .................................... ATTTCATCATTCGACAACGACTAGTAAG 62841 36 100.0 28 .................................... CCGAGTTCCTCGCCCGTTACGGGTATGA 62905 36 100.0 28 .................................... GGTTTGTGTTGTTTGGGTGTCGGGTGGT 62969 36 100.0 28 .................................... CGTTGTCGCTGTGCCCGCATGTCAGACA 63033 36 100.0 28 .................................... ACACCACCATTACCAGCCTGGACCTCCG 63097 36 100.0 28 .................................... CGAAACAGTGGCAAGCGTCGTCCGCTGG 63161 36 100.0 28 .................................... CAACGAGCTTCACACCATCCTGGCTAGG 63225 36 100.0 28 .................................... TCATTGCTTCGACAGTGGGCAGGTCATC 63289 36 100.0 28 .................................... GTTGCCAATGACGGTGATTAGCGTTTCT 63353 36 97.2 28 ...................................A CGCCCACAGCGCAATTCGCCCATCGGCG 63417 36 100.0 28 .................................... CGGATCGCGCGCGGCTTGGCAGGATGAC 63481 36 97.2 28 ........................A........... CTTCGATGTCAAGGTACTGTCGCTTGTT 63545 36 100.0 28 .................................... GTGGCGCATACCAGCAGACGCCCTGCAG 63609 36 100.0 28 .................................... GCGCTCGGCGCGCTGTGCCCACTTCGCT 63673 36 100.0 28 .................................... AACGTGGATGATCAGTGCATCCTCGGGA 63737 36 97.2 28 ......G............................. CAGCTCACCAAGGCTCATGCCTAGGGCT GGCGG [63742] 63806 36 100.0 28 .................................... GCGTGGCTTTGGCCTGGTCCTCCATGGC 63870 36 100.0 28 .................................... CTTGACCATTCCGTCCGCGATTTCGCGG 63934 36 100.0 28 .................................... TGATGGCGGCGCGGGCGGTGGCGATAAA 63998 36 100.0 28 .................................... TGTTACACCTTGTTACGGGCTTGTTACA 64062 36 100.0 28 .................................... AGCGGGGACGATGCTCGCGCCGCGCAGC 64126 36 100.0 28 .................................... CATCCAGAACATCACCGCCCAGTTGGCG 64190 36 100.0 28 .................................... GCCACCCGGATGGCCTCCCGTGCGGTGT 64254 36 100.0 28 .................................... GCCACCCGGATGGCCTCCCGTGCGGTGT 64318 36 100.0 28 .................................... ATCCACGTAGTAACCAAGCGCCTGACCA 64382 36 100.0 28 .................................... CCGACCGAGGTAATCCACGTCGTTGATG 64446 36 100.0 28 .................................... CGGGATGACGTGGGGGATGCCGGACTTC 64510 36 100.0 28 .................................... GACAACGTCACCGGCGACCTGACCACTG 64574 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 94 36 99.9 28 CAGTATATCAAAGGGGATGGATGATTGATTCTCAGC # Left flank : GATGGGCATGGGATTCCCGCTGTCGCCGAGGCGCTTGCACAGAGCTTTGGTCGTTACGTGGAGGGGGACCTTGAACGTCTCCGTGTTCTGTCGTGGCAGGGGCCGTCTGTGGTTGGCGTGGGTGAGTGAGATGGCGGATGACCCGATGTGGTGCCTGGTGATGTTCGATCTTCCGGTGGAGACGAAGAGGCAGCGGCGTGAGGCGACGCGTTTCCGTAACGATCTGCTGGATTGGGGTTTCTGTATGGTCCAGTTCAGCGTGTATGTGAAGTATTGGCCGACGGGCGGGCAGGATCATGCGACGTTGCGAGCGATCAAGTCTCATCTGCCGGAGGGTGGGCAGGTGCGTGTGCTTGCGCTGACGGATCGTCAGTGGGCGACGGGGCTCCGTTTTGATAACGCGAGGCCTCGGAAGGAGGTCGGAAGCCCCGAGCAGCTCATGATTTTCTGACGTTGAACCCCGAGTTTTTGGCTGTTTTATGCCGAAAACTCGGGGTTCT # Right flank : CCCTATCGCCGAGTACGCCTCGGGCGGCGCAGTATATCAAAGGGGATGGATGGCGGTGTCAATGGGTGGTAGCAATGAGTTCGTTGAATGCTTGTAGGTAAGCAATGACTGATCCGGAAAATAAATAGCGGCAGCAGATATAATGAAGAGGTGAGGACCTCCTTCGGCCCATTTGGCGGTCGATTACTTCATGACTAGGGAAGGGGCCCCTTGCTTCCTAGGCAGGATTCTCTACCGATGTCCGCCCGCTGGGATGGATGATTGTCAGCTTGATAGCAGGTGCCGTCGTAAAAAGGGCGGGACCCATTGCCCGAACGTTCTGACGGTCTGTTATTTCAAGACTAGTTCAGGGGGGATTCCCGCTCCGCGGGCGAGTTTAGCACATCTTCTTTCCGGCGTGCGCGGGCATGTAGAGGCCTCCCTGAGGACGCCCCTAGCGCTCGCCGCGGCTCCTGCCGCATCCTACCCCGCTACCAAAGAGAACTAAGGCGATAGAGGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGTATATCAAAGGGGATGGATGATTGATTCTCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //