Array 1 169136-163804 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJNB01000003.1 Trichococcus ilyis strain R210, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 169135 32 100.0 34 ................................ TTCGTTCAAGTCAACAATCCAATGTTCAATGTCC 169069 32 100.0 34 ................................ CGAGATCAAAAGATACATCCGACCCTGCTGTCCA 169003 32 100.0 37 ................................ TCACGAGACTCTGGGTCCATAGCAGGTGGAAACTCTC 168934 32 100.0 34 ................................ GCGAGATACGTGACTTCGTGGATCAATAAACCCT 168868 32 100.0 36 ................................ AGCGTGGAGACAAAAGAGTTTATATCAGGCGTGGTT 168800 32 100.0 35 ................................ AAGGCTTGCTAATATCTGGTATCACATGAGAGCGC 168733 32 100.0 37 ................................ GTTAGTGAGGTTTAATTGATTATAGAGTTTTTTATGA 168664 32 100.0 36 ................................ ATTACCGTTTGAACAATCATGGATAAAGCCGGAACT 168596 32 100.0 34 ................................ ATTATCCAAACTCATATCCCCGTAGTCCGTCCCA 168530 32 100.0 34 ................................ TCAGTTGGCGCAAAAGGCACAAAAAGAATATGTG 168464 32 100.0 35 ................................ AAGACGGCAGAGACAAAAAGTTAGAGACGTCATAC 168397 32 100.0 36 ................................ AAAAACACATAAGTAATAGAAACAAGAAAAAAGCAT 168329 32 100.0 35 ................................ ATTTTCCGGCCCTCTTCCGCTGCAACAGTACGCCC 168262 32 100.0 33 ................................ GTGGAAAACACGGGGGTAGACAGGCCGGGATTG 168197 32 100.0 33 ................................ GTTAGCAGTGTGCTGAGTTCTTCATCCGATTCC 168132 32 100.0 35 ................................ GGTTACCGTCGCGCGGTACTTCCCAACGATCCTCA 168065 32 100.0 35 ................................ CGCTGGATACGTGATCACATATTCGCCTTTGGTTA 167998 32 100.0 34 ................................ AGGTACCGTCCGGCAATGCGCCTTGCTGCCAATT 167932 32 100.0 33 ................................ AAGTTCCAGTACGAAAGCCCGTCGTTCGATCCA 167867 32 100.0 32 ................................ TTTGTGGTAAAGGTATTACTCCGGCCGGTTTC 167803 32 100.0 34 ................................ ATGCAGGAACATGATCACGTTGCTGTCCTGTTCC 167737 32 100.0 34 ................................ GTCGCTTGCCGGACCGGATTGAAAACGATCCAGG 167671 32 100.0 34 ................................ CGTGCCATCAATGAAGAATACACAGCGAGCCAAG 167605 32 100.0 36 ................................ TTGTCGTGATAGCTTTCGGACAGCACCGCCCGAAAC 167537 32 100.0 35 ................................ ACTTGCTTTGAGTTGTCCGTGAATTTCCAGCTGTT 167470 32 100.0 35 ................................ GATCACTGGCAGCGGCAGGATGACCAACTGCGCCA 167403 32 100.0 36 ................................ AGCAACTGAATCAATAATAACTCCTTTTACAATAAA 167335 32 100.0 33 ................................ CGCCTTGTTGCACTTCATATCCAGCAAAGCGTA 167270 32 100.0 34 ................................ GTCCGTGCCTGAAATCATATCCAGATAGCCGTAA 167204 32 100.0 34 ................................ CGTGGACATGCCCAATCCTTTGAATTTCGAAGTA 167138 32 100.0 34 ................................ TCCTACGCCCACTTGCGGATATCGTACTCTTGCA 167072 32 100.0 34 ................................ CACGATCAGCGCCGCCGATTCCAACGCCTGAAAC 167006 32 100.0 33 ................................ TTGGCCAAACTTGTACGGCTTGCATACAGGCGT 166941 32 100.0 34 ................................ ACATCGTATGCAAGCAGCTTTTTGACGCCTTGCT 166875 32 100.0 33 ................................ CAACGAAGGGATTAGCCTACTGGAAAATGCCGC 166810 32 100.0 33 ................................ CGGAAGAACCGGAAAAGGAGGAAACGAAAATGG 166745 32 100.0 34 ................................ CATCGACTCGAAGCCTTGGGGTGAAACAGGGGCC 166679 32 100.0 34 ................................ AAGTGGACGGGACTACCGGAAAACATCCCTTTAG 166613 32 100.0 34 ................................ TCCTTTTTGGTGTATAATGTGTGTAATCAATATG 166547 32 100.0 34 ................................ CCAGATTGTCATAGTGTCCTCCTTATGCTGCAAT 166481 32 100.0 35 ................................ TCCGTTCGCACCTTCCAACGAGATCACGTCTCCGG 166414 32 100.0 34 ................................ CCTATCTACTTTCAAACTAGCGCTTCGCATACGC 166348 32 100.0 34 ................................ TCCCGATCCCGGAATACCGTATCCATCAGGTTCA 166282 32 100.0 35 ................................ CGATTGCCGCCCATACCAATCCGGCCGCCTTCGAC 166215 32 100.0 34 ................................ TAATTAGCTACAACCCAGGAACCAATCGTTCCCG 166149 32 100.0 34 ................................ AATAACACAAAAAAACGCCCCTATTGGCGATAGG 166083 32 100.0 34 ................................ TTGAACGGTCATTTTATCGGTACCGAGAACCTAT 166017 32 100.0 37 ................................ TGCAAAATACTCAACTGGTTTGCCGCCGAATGACCAT 165948 32 100.0 33 ................................ CTGAATACGGATGGCAAGTGGACAAAGTGGTAC 165883 32 100.0 34 ................................ AATATGCGCCAAGCCATTAAAGAGAATGCTCCTG 165817 32 100.0 34 ................................ ATGGTCGTGGTTACGTTGTCGTGGCCAAGGCGTT 165751 32 100.0 34 ................................ TGCTTATCCAACTGGGTTGAGTGTGATTGTTTTA 165685 32 100.0 34 ................................ ATGTATTCCGAGAATAGCCGCTCACCGAAGTCCC 165619 32 100.0 34 ................................ CGAGGTCGATCTCGATGATCGGCTCCGTGTCGTC 165553 32 100.0 35 ................................ AACCAGTGTGTCCAGCGTATCCACCGCGTACTCGA 165486 32 100.0 34 ................................ GGGATCAAATTCGTCTGTCATTTGTTGCAATCGT 165420 32 100.0 34 ................................ ATTTGAGATATGACAGAAAAGTGTGGTTCGTTAA 165354 32 100.0 33 ................................ TGTTTCAGTCTGCACCTCATGTGAGGCATTTAT 165289 32 100.0 34 ................................ ACTATCTTAAGTGGGATGCCGTTGAGGGTGTTGG 165223 32 100.0 35 ................................ GGGAGAGGAAGACGACCATAATGCTAGATACTATT 165156 32 100.0 33 ................................ GACGCGGGCTTTTTCGTCCAGCATCAGTTTTAG 165091 32 100.0 34 ................................ GCTCATCCCTAAATCGGAACAAATCAGATCAACG 165025 32 100.0 33 ................................ CGCATTCAGCAGTTTGATCTCGGCATAGGCGCG 164960 32 100.0 33 ................................ TTGGCTCCGTATTTGCTCAATGGCTACCTCCTC 164895 32 100.0 33 ................................ CGGCACAACAATCAGCTACACACTGACAGGCAC 164830 32 100.0 35 ................................ CCGGCGATCGTGTAGATCGAGTCCTCGAAGGGTTC 164763 32 100.0 34 ................................ CGTTTGGTCGTTCAACGTGACGATCCGGCCGTCC 164697 32 100.0 34 ................................ TGGTGTTTTTGAAGCCCAAAACCCATAGGCTTTA 164631 32 100.0 33 ................................ ACTCCCGATGTCGTCAACAAACGTCACGGCGAT 164566 32 100.0 34 ................................ TCTCCTCCTCGCGCGCCTGTCTGTGTTCGTGGAC 164500 32 100.0 35 ................................ GCAATTTCAGGCGTGTAACTAACCCCATTATCACC 164433 32 100.0 35 ................................ AGAAGGTGAGGTGTGGTTGCCCGTCCAGCATACAG 164366 32 100.0 34 ................................ CACGATTAAGCGGGTGCAGTTAACAGAAATAACA 164300 32 100.0 36 ................................ GCAATTTCAGGCGTGTAACTAACCCCATTATCACCC 164232 32 100.0 34 ................................ ACATAGGAGGTACGGCGGCCCCCGCCCCCTTTCC 164166 32 100.0 34 ................................ AACTTACTATCGAGTTAATCCCATCGAATTCGAG 164100 32 96.9 33 ...........T.................... ATTGATGTGGATCAGACGGTAGCGGTCTTCAGG 164035 32 100.0 35 ................................ CATCGACGTGCTCAATTCACCCACGATTTGATTCA 163968 32 100.0 36 ................................ CGACAGCTGCGTTGAACGGTGCGCCATCAACGGTAA 163900 32 100.0 33 ................................ ATCCTCACACCCCCGTGCTGCCGAAGCCGTTTG 163835 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 81 32 100.0 34 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : TTGGATCAATATCCACCATTTCTATGGAAGTAGGGGAAGTAGGTGACATGTTATTCTAGCATTGATAACCTATGATGTCAGCGTATCGGATAAAGCAGGTAGAACTAGATTACGCAAGGTAGCAAAAACTTGCCAAAATTATGGGCAAAGGGTACAAAATTCTGTATTTGAGTGTATTGTGGATAATACTCAACTTACCGAATTAAAAATTAAGTTGTTGGATATTATTGATACGAATGAGGATAGTTTGAGGGTCTACATCATCGGTAATAACTACAAAAATAAAGTCGAACACTTTGGAACGAAAAAAGCTATGAACTTGGAAGATGTATTATTCTTCTAGTGCGAACCTGAAGTGAACATAAAAGTATTAGAAGCTTCGCACCTCGATGATGTAATATAATTGACTTGATTGTTTTAATATTTATTGTAAAAACGAGTTATAGTGAGTTAATCTGTTGATTTATACATAAATTCATTGATTATCGCTATAATTCGCA # Right flank : TAGCCTATTTTATAAGGCAACTACAGCTATTTTGATTTACATGGGAACATTATTTGTTATTAGATTATGTTCCCATGTGTAGTGCATTCGTATTGTTCTATTACACTCTCCAAAATAAATAAAGACTGGCAACTATCCTTCCCGGATAAAATTGCTAGTCTTTATTTGTAGGGGTATTTCAATCACAATGGCGTTTTTCCAGTTTTCTATTAGTCCATTTAAGGGATAGTTTATAAAAAGCCTCAGCCATTAATCAAACAAATCCTTATCAGATAATGATGTGAATGGATTATGTACTTGGCTGGATTTGATTACCTTTTCAGATGGAATGAGCTCACCAGGTCCTTCTTTAACCCTATTGTTCAGTTGACAACAGAAGAGTTTTTCTTCAAGTTCCCTGTTTATTTTTACAAGTTCTTCGTAGGTGGGGGTGCTGGGTATGACGTTTTCAGATTTGTTGGAGTTAATAATAGAAGTTGGCTCTCCCAATTGTACTTTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //