Array 1 214050-211579 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIWJ01000002.1 Salmonella enterica subsp. enterica strain NLC13 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 214049 29 100.0 32 ............................. GCGACATTAAATTAGCGGTGTTGATGCTGGTG 213988 29 100.0 32 ............................. AAATACGACAGCGCACGTTAAAAAACGAAATT 213927 29 100.0 32 ............................. GCATTAATTTAAATAACGCAATTCAGTTAAAT 213866 29 100.0 32 ............................. TGGGAAAACCTGCTCAAAGAGGATATCGGGTC 213805 29 100.0 32 ............................. GCTATATCCCCTGGGGCGTGGCCGCAGCGGGC 213744 29 100.0 32 ............................. GGCGGCACGTTGTTACTGTTTCCCTCAGTGGT 213683 29 100.0 32 ............................. GAGCTTTGTTATATGAAAATTGGATTGATTGG 213622 29 100.0 32 ............................. CTGGCGGGCGCTGAATTTATCGCCGCCGACTA 213561 29 100.0 32 ............................. GCTATAGAGCGCCATCTCCGGGAGCTGACTAA 213500 29 100.0 32 ............................. ATCGCAACTTTTTATCGTGATATCGAGCAATC 213439 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 213378 29 100.0 32 ............................. CGAGAAATTTAAAAATGGAAAATACCTCCGTA 213317 29 100.0 32 ............................. AGTAACCCGTCCTCGTGCCAGCGGCGAGAGCG 213256 29 100.0 32 ............................. TGCGGGAGTACTGGGATCACGATTTCAGCACG 213195 29 100.0 32 ............................. AATACCTACGCGAACGAACAGTGGCTGAAAGG 213134 29 100.0 32 ............................. GAGATTTAAATGATCCACACGATTACGTTAAA 213073 29 100.0 32 ............................. GCCGCGTTGGTGGACGACGTCGGGACGATTTA 213012 29 100.0 32 ............................. GTATCAGGGCGTTATGTAAAAATCTTCTTTCA 212951 29 100.0 32 ............................. TTTCCGAAGACCTCGGCTGGCCCTTTGAAAGG 212890 29 100.0 32 ............................. AATAATATATCAGCCCCGATTCATCATTCGGG 212829 29 100.0 32 ............................. GAGCATGTTTTCGGCCGGAACCTGCCGCGTGT 212768 29 100.0 33 ............................. GTGGCGTTTAGTAAACAACCACACAACGAGCGG 212706 29 100.0 32 ............................. ACGTAGATATTTGAGGGGATTATGGCGAAAAA 212645 29 100.0 32 ............................. GCAAGCTGGGCAAATGCGGCCACGGCGGACCA 212584 29 100.0 32 ............................. CTGGACGGTCGGATCGTGGGCAATTATCCGTT 212523 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 212462 29 100.0 32 ............................. TGAAATAAATAATTCAAATCCAGTTCTTAGCG 212401 29 100.0 32 ............................. GCCTTCTTCCGTAAGCGCCAGCACGTGCACAA 212340 29 100.0 32 ............................. TCGGCCTGTGAATACTGATAACTGCGGCTGTT 212279 29 100.0 32 ............................. AGTCTCAGGAGCCACCTCCCCCGGAATCTGAA 212218 29 100.0 32 ............................. CTAAAAATGGATGTGGCGCCGTAGGGGTTTGC 212157 29 100.0 32 ............................. GAAATATTTTTCCTGACTCCTCCGACTGTTGT 212096 29 100.0 32 ............................. CAGTTAGCTAATCGTGCATGGCGTACCGAAAC 212035 29 100.0 32 ............................. GGCGGTGCCGCAGGCAGCAAACATTCAGATTG 211974 29 100.0 32 ............................. CTTGATAACGCGGCTGGAACCAGCACCGAACA 211913 29 100.0 32 ............................. AGCATTATTCAAAGAAAGCGCGATAGAAAAAA 211852 29 100.0 32 ............................. CCTCGGAAACGGCCAGCGCCGACAACGCCAGT 211791 29 100.0 32 ............................. TCTATTCAAGTAAAGGAAACGGGCTGACTGCA 211730 29 100.0 32 ............................. TTAATGCCGCTGTAAGCTGTGCCGGTGTGAAA 211669 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 211608 29 96.6 0 ............T................ | A [211581] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 231491-230181 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIWJ01000002.1 Salmonella enterica subsp. enterica strain NLC13 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 231490 29 96.6 32 .............T............... CAGTATTTCGGTATGGCAAGCAGTAGCGCGAA 231429 29 96.6 32 .............T............... CTCATCAGATAAACCCCTTTGATTTATCCCGG 231368 29 96.6 32 .............T............... CCGGCGCTTTCAATATTTGAACACATTCGGTG 231307 29 100.0 32 ............................. TCAAAATCCTAAAGTGTCAATTTTTAGCCCAG 231246 29 100.0 32 ............................. GGTCGCTATTTCCTGCCCCCTCGGTGGTCGAG 231185 29 100.0 32 ............................. AATATTTCTGGCGCCAGGTGCATTCCGTCGCA 231124 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 231063 29 100.0 32 ............................. TGATCTGGCTGAGTTCTCCAGTGACGACAAAA 231002 29 100.0 33 ............................. GCAACCGGTGCTGAACCGGTGGCGGCTGTCAGC 230940 29 100.0 32 ............................. CGACTCATCTCCCTGGTGTGGCTGGCAGTACA 230879 29 96.6 32 .............T............... CTCCGCGTTACGCCGATCGCGCACATTCCAGC 230818 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 230757 29 100.0 32 ............................. CCCCGGTTGGCTTCGACAAAACTGCAATTGCA 230696 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 230635 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 230574 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 230513 29 93.1 32 .............T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 230452 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 230391 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 230330 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 230269 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 230208 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCAATTATGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //