Array 1 9176-9803 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATEV02000028.1 Vibrio paracholerae VCC19 Vibrio_cholerae_VCC19_scaffold28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9176 28 100.0 32 ............................ AACGGGCCAGCCCCGCCCTTGGTGCTCTCGGG 9236 28 100.0 32 ............................ ATCCTCTAAATTTTCAACCGTTCCTTTATTAG 9296 28 100.0 32 ............................ TGCACGATACTATCACCAACGCCGATGATTGT 9356 28 100.0 32 ............................ TTTTAGGGCGATAGGGATAAAATTCTCGTATT 9416 28 100.0 32 ............................ TTTCAGGCCGATAGTGAAGTCGTACTCACCCT 9476 28 100.0 32 ............................ TAGCACGCTAGATGATGAGTTGTAATAGCTAA 9536 28 100.0 32 ............................ CGTAGATTTATTAAAAATGGTGATCTTGCTGG 9596 28 100.0 32 ............................ GTTAACTAAATACATAGAAGAGTGAGGGGGGA 9656 28 100.0 32 ............................ AATCCTCAGTGCGTAAAATTTCATCAATCTGC 9716 28 100.0 32 ............................ GTCAGAGTTTCGACATCACGATTGAGTATTTC 9776 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAACTAGAGTCTTATATACTCAAGCCCATGTCGGAACGGACTATTTAGTAAGGTTTTTGACCTTTGATATTGCCTTACATGAATTTTTTAAGTCTATCAAAATCAATAGGTTCTCTCCAATTTTCAATGGATATGAAAGCGGAGTGTTCACGGATCTCGGTTTTAGTAAAAAAATATTCTCTGAAATTGATGATCAGGAATTTGAAGAGCTATCACGTATTATTTTAAACACATAACAAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTGTTACTATGCGTTGGTTTTTGTTGTTACGGTGTTATGCGGTAATTTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCTAGCAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTATGGTTGTTGTGATTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTATATTTCTTTTCAGTTCAACCATCAAAAGGATTCATCATGAACGTGGATAAGGCGAAAAAACGCATATTGAAACGAGTACAAAGAGGTTTCAGAGGTTATCCGCAAATATCATTAGAGTATTTCGGTGAAACGACCGATTTGGCGACCGAAGTAGTCATCACTTTTGTTCCTGAAGAAAATGCCGAACCACAAATTCAGAGATTTACGAGTGACAAAGATGTCCGTGAAGATGAAGCGATTCAATCGGTATTGCTAAAAATCATTGAACGAGCAGAAGCTGCGACTGTTTTAGAGAGCCGAGAAATATCGGTTATTTAATGATTTTTGGCAATGCTCAACGTTCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //