Array 1 107695-106279 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYU01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM3605 BCW_8430_1__paired__contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107694 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107633 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107572 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107510 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107449 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107388 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107327 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107266 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107205 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107144 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107083 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107022 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106961 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106900 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106839 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106777 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106674 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106613 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106552 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106491 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106430 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106369 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106308 29 96.6 0 A............................ | A [106281] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125808-123827 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYU01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM3605 BCW_8430_1__paired__contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125807 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125746 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125685 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125624 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125563 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 125502 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 125441 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125380 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125319 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125258 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125197 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125136 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125075 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125014 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124953 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124892 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124831 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124770 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124709 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124648 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124587 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124526 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124465 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124404 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124342 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124281 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124220 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124159 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124098 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124037 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123976 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123915 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123854 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //