Array 1 311037-312630 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBEN01000006.1 Ligilactobacillus salivarius strain DSM 20492 DSM20492_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 311037 36 100.0 37 .................................... TTTTTTCATATCAACCTTACATTCTTATTATCTCAAA 311110 36 100.0 39 .................................... CCGTGCCGTTATCATGATGTTTGGGCTGGCTGGAATGAG 311185 36 100.0 39 .................................... TTGTAACTCTTCTATAGTTTGATAATTTTGTTCACGTGT 311260 36 100.0 36 .................................... CAGGTAGCAGCCTAAACCACCTATATTCAGTTGTCA 311332 36 100.0 36 .................................... CTGAAATACTTTGAATTAGTCGATTGATAACTTTAT 311404 36 100.0 36 .................................... TCATAATTAATTTACCTCTATTCTTATTAATTCTTT 311476 36 100.0 37 .................................... TGAAGATAAAATTTAAAAATCTTCAAAAAAAATACTT 311549 36 100.0 36 .................................... TGTTGAAAAACTTTAAAGCGTAGTCGATTTTGTACT 311621 36 100.0 40 .................................... GGTCTGTTGCTTGTTCGTATATTTCATCAATGTACCAATT 311697 36 100.0 41 .................................... AAGTCTAAAATAGTTTGATAATTTTGTTCGCTTGTATTCAT 311774 36 100.0 37 .................................... CGAAGCGGGATATAACAATATATTTATACTCTTGAGG 311847 36 100.0 39 .................................... CCTACTTCCGAGATTTTATTAAATTTTCCAAAGAACGCC 311922 36 100.0 39 .................................... AGCTTTATCTGTTCCTAACGCCTTTAATGCTTTATTGAA 311997 36 100.0 36 .................................... AGTTAGATAATCGAATGTGTCTAGGTCATCAAGGAT 312069 36 100.0 38 .................................... GAAACTTCGTTCGTGCAATAGTTCAAATTGTGTATTCA 312143 36 100.0 37 .................................... AATCATTAAATTTATCTTTAGCCCAACTCACACCAAC 312216 36 100.0 38 .................................... AAGCTTCAATTTTGAAGTTTCAATTTTAAAGTTGTCGA 312290 36 100.0 41 .................................... ACTCCTTTGGTTTTGCCTTGCTCCACATCCATACGCTATCT 312367 36 97.2 37 .................A.................. TGGCTTTATTTTAGGTAGCAGCCTAGACTACCTATAT 312440 36 100.0 42 .................................... TTCGTTCATTAGGTTTATCAATCTTTCATCAAATTTCATTTT 312518 36 97.2 40 .....................G.............. CCTGCTGTTGTTAGTTCGATCATTTTTCTTCATCCTTTCG 312594 35 88.9 0 ............................-....TCT | TT [312624] ========== ====== ====== ====== ==================================== ========================================== ================== 22 36 99.2 38 AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Left flank : CAGGATTGAAATTACCGACTTTCATTGAGGAAGGAAGATAAGTATGATGCTATTAGTATGTTTTGATTTACCAAGAGACACGAAAGAGAATAGAAAAGAAGCAACTAAATATCATAAGAAATTAGTAGAATTAGGTTTCACAATGAAGCAATTTAGTGTGTATGAAAGAGAAGTAAGACAAAATTCTACTAGAGATAGAGTAATTAAAGTGTTAAAAGATAGATTACCTAAATCAGGTGCAATTACTTTATATTTACTTCCTAACGAAGTAAATGATTCACAAATAACGATTTTAGGAAGTGAGTCTATAAAGAAAACTGTTAGGAAACCTCAATTTATTGTGTTATAATACACTTACACTGCTGTAAGAAACAGTAGTACAAATAAAAACTTGTCTGAATTTTGACCAAATAATACTTATTAATTTAACCTATTGCCCGTTTAGGGTACCATTAAAAATGTCAATAATTGTTGATATATCAACTAATTGATCAAAGAGT # Right flank : TAATTAAAGTGATAAGAAGGAGAGTAAAAGTTAGAAAAAATAATATATAATATAGGTAATTAATTAGAAAGTGGTGTAATTATGACAACATTAATATCATGTATTGGTGATACAGATCCTATAAGAAATAGGCATGATGGAGCTTTATTGCATTTAGCAAGAGTATTTCGCCCTGAAAAAATATTATTAATATACTCTGAGCGTGCTTTATTGAAAGAGAATAATATCTTATTAGCGTTAAATTCTATAGAAGGATATAGTCCTGTAATAAAAAAAGATGAGAGACTTATTTCCGATAGTGAAGTATTTATTTTCGACAAAATATATGAAATATTAAATAATGTAGTCTTAAAGTATTCTAGAGATAATGAGGATTTAATTTTGAATTTATCTAGTGGAACTCCACAAATGAAGTCAGCTTTATTTACTATTAATAGATTGAATGATATTAATGTTAGAGCCTATCAAGTAATAACACCTAGTCATTCTTCAAATGAAGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 43106-44317 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBEN01000002.1 Ligilactobacillus salivarius strain DSM 20492 DSM20492_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 43106 36 100.0 30 .................................... ATTATGTTTCTTGGAAATAAAAAAGGATTG 43172 36 100.0 30 .................................... AATCGTAACTGTTGTGTTTTTTGTTTATTT 43238 36 100.0 30 .................................... AATCAGTTTTATTAATCAAACATTTTGATA 43304 36 100.0 30 .................................... CAATAAGTGTAATAGTCTTTTTAAAAGATA 43370 36 100.0 30 .................................... TAAAACAGGAGAAAAATTAACAAATTCAGT 43436 36 100.0 30 .................................... GAAATAAAAAAGCTAGTGGACCAGTTAGTT 43502 36 100.0 30 .................................... TTACAGTTTGCAAGATGTGGCTAAGTTTTT 43568 36 100.0 30 .................................... ATGATAATAAAAAGGAAATACAGGAGCTAG 43634 36 100.0 30 .................................... TTGCCGTTAGGGTTTCAATGATTGAGGCAA 43700 36 100.0 30 .................................... CGACCAACACCTTGAACTAAAATCTTACCT 43766 36 100.0 30 .................................... CTCCACCTAATCCGTCAATCTTACCGTTAA 43832 36 100.0 31 .................................... TTTGTTGCTTGTAGTAAATTCTTACCTCATC 43899 36 100.0 30 .................................... TAACCTTACCTAGACTTACGATATTGCCTA 43965 36 100.0 30 .................................... ACCCCGTATCACTCGCCGTTGGGCATCAGG 44031 36 100.0 30 .................................... GACTGGTAATGTAACGGTTGAAGCACATGA 44097 36 88.9 30 ..........A.........T....GA......... TACTTTCTTTTATGATATAATTTAAACATA 44163 36 77.8 15 .............A......TCT.......TG..AA AACACAGGAGGATTA A,A [44183,44191] Deletion [44216] 44216 36 91.7 30 ..........A.............A..........T GATCTACGTTACATTTTCTTAATGTTCACA 44282 36 77.8 0 ......T...A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 96.6 29 GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGTGAGATTTTGTATAAAATTGATATACCCTTACAAGCAGATTATGATAATGATTTAATAAGACTATTCAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTGAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAAAATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACT # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATAAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGATTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGAAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAACTAGGGAGGGGGAATAATAATGAACT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //