Array 1 21641-24888 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHPT01000047.1 Bifidobacterium longum subsp. longum strain MCC10010 contig0047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 21641 36 100.0 29 .................................... GTGATATAGATATTATATCACACTGTTGG 21706 36 100.0 28 .................................... CGACCGCGAGCACCACTGCCATGCCGTG 21770 36 100.0 28 .................................... GTACCGTCTGACCATCACGGTCTCGCTG 21834 36 100.0 28 .................................... TGAGGTGCGCCCGGCTCCAGTGCGCATA 21898 36 100.0 28 .................................... TATCGTCTGTTGACTGAACTGGCGTTGA 21962 36 100.0 29 .................................... CGATGTTCTGACTGTACATCGTATGCACG 22027 36 100.0 28 .................................... ATAACGATTAATTCATGATTGGGCATAT 22091 36 100.0 29 .................................... AACGCGCTGAAATACGGGTTGGCCAATGT 22156 36 100.0 28 .................................... ACCGTCGCCTGCTCGCGCTCAACTTCGA 22220 36 100.0 28 .................................... ACGTTGATGATGGCGTTTCGGTATTCCT 22284 36 100.0 28 .................................... AATGAGATCGTGAAGTTCAGCAACCAGT 22348 36 100.0 28 .................................... GTTGCCTTTCCTTATAGGGTTTAGTAAT 22412 36 100.0 28 .................................... GATTGCCTAGGATACGGAGTTTGCCATA 22476 36 100.0 28 .................................... TCCATCTCCTGTTCGAGCAGTCCTATCG 22540 36 100.0 28 .................................... CACGGCCGAGCATGGGACCGAACACTTC 22604 36 100.0 28 .................................... TCCCTAAAGTACGCAGTTTTTCGATTGA 22668 36 100.0 29 .................................... TTGTGCATGATAGCGTTTGCCACGCCTGT 22733 36 100.0 28 .................................... CTTTCTTCTAGGCTCTGGCGTTACCGAC 22797 36 100.0 28 .................................... CTTGGTTCTTCCTTTTCAAGCCTACGTC 22861 36 100.0 28 .................................... AAACGAGGCATTGATGAGAACGTCGTAC 22925 36 100.0 28 .................................... TCCACCGACGTGATGGACAACTACACGA 22989 36 100.0 28 .................................... CTTTGGGTGACGATCCACTTGTGGATGC 23053 36 100.0 28 .................................... AAGCAGGCCATCGCTCGCGCCGACGAGG 23117 36 100.0 28 .................................... CTCAGGCATGATACTGTTTTATATGACT 23181 36 100.0 28 .................................... CCATCCATAGTAGTGGTATCGAAGAAGT 23245 36 100.0 28 .................................... TCGTCTTCGGTGCCCACTCGCGTGCAGC 23309 36 100.0 29 .................................... ATTCATGACGCTTCGGGTGCTGTTGCCGT 23374 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 23439 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 23503 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 23567 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 23631 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 23695 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 23759 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 23823 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 23887 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 23952 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 24016 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 24080 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 24145 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 24209 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 24273 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 24338 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 24403 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 24468 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 24532 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 24597 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 24661 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 24725 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 24789 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 24853 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 51 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCGGGCTTGTCGGTTCACGCGAATATCGTGGAACACATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //