Array 1 7877-6872 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASR01000029.1 Gilliamella apis strain A-TSA4 NODE_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7876 29 100.0 32 ............................. TAAACAGTTTTACCGCCCTGTTTAACCGCTGT 7815 29 100.0 32 ............................. CAATTATTTTTTTCATGTTTTATTCCTGTTTA 7754 29 100.0 32 ............................. CACCGAGAGCAGCCGCTTTAATAGTAAGTGGC 7693 29 96.6 32 ............................A TACTGAAGCTCATAACGATGCTCACACATAAC 7632 29 100.0 32 ............................. TTTTTAATCACCACCAACATGCCAATATTGGA 7571 29 100.0 32 ............................. CTATCAATATCAATATCGTTCCATTCTAAACC 7510 29 100.0 32 ............................. GCTGGCGACAAGGTGATGGAACTTTATGGAAA 7449 29 100.0 32 ............................. TAAAATCTATTGAACATAATGGCGACCTATAC 7388 29 100.0 32 ............................. TTAATAAAATCATTCGGTGACGGTATAGTTAA 7327 29 100.0 32 ............................. CTAATTGCCGATGAGGTTTTGCCCCGTGTGCC 7266 29 100.0 32 ............................. CAGAAGTCGAGGCTAAAACAAACTATCTAGGT 7205 29 100.0 32 ............................. CTAATCCATCATTAGGTCATACGTTTACCGAT 7144 29 100.0 32 ............................. CTGGTTGTCTAGTTGTAACTAAAATGAAAGCA 7083 29 100.0 32 ............................. AATTTAACTTTTTCTCCCACATTGAGATTATT 7022 29 100.0 32 ............................. ATAAATACAATATCAATTTATCGGATTCTGAC 6961 29 100.0 32 ............................. GAACAAAAGTTAATCCCTTGGATATAGTTAGT 6900 29 86.2 0 .....................C..TTG.. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.0 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTCAACGATGATGGTGAACCAACCAGCACAGCCGGCCGCCCTATTCTATCGGCCATTGAAGGTCAAGATTGTGATCAGGTGGTGGTGGTAGTCACCCGCTACTTTGGCGGTATCAAATTAGGTACCGGCGGATTAATCCGCGCTTATGGGGGCTCAGCTAGCCACTGCTTACAACAAGCTGAATTAATCGAACTTATTGCTAGAACATCATTACAATTTCATTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAAATTTTGATGCTGAAGGTGTCAAAGCGACTATTGCTATCACACAAGACAATTTACTAACCCTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGGTTATCAAGACTTAAAACACCTGTGTAAATATCCATCCAAATACAGCAAAAAAATTGGTAGAAATTGTAGACTGCATATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : TTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCGGGCGGTTTTTTATTGCCCCGAATGCCTAAATAACTTACTATTGCCTAAAAAGGAGATGGCATGAAAAGAATTACTTTATTTGGGATAGCTTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAGGAGATGTTACTTGGTGAGTGGAACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGAAAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATGCCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTCTAAACGGTACATATACAATCATCGATAAAAACAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5030-4823 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASR01000011.1 Gilliamella apis strain A-TSA4 NODE_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5029 28 100.0 32 ............................ AATTTGGTCAGGCAAAGATGCAAAAGTAACTG 4969 28 100.0 32 ............................ CTTAGTTAAGGGCGAGCCTTTCACATCTTTCT 4909 28 100.0 32 ............................ ATTACGAAACGCGATACCAAAACAGCGCAATA 4849 27 92.9 0 ....................A..-.... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : AGGTATTGAAGCTGAGGATAAGAAAAATAACGTTAGGGCGTTAAAAAACGATTTTGTAGTGCGACTTTCGCAACGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGAAGGCGGAAGGCAGTCACGTAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCATATAAAACTAGCTACCAAACAACAAAACGTCCGAAACTCAGCGAACCAAAAAAATTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAACACTTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATTAATTATTTCTAAAAAGATTAGGAAAAATTTTTCAAAAAGCTAAAAATCCAAATTAGTTATAGCTTTGTTAAATAAAAAACCCCCAGTAATTGGTTGTCCAACTATTGGGGGTCACTTCATTATGAACGGTTTTTTATTATTGGTTAGATAATTTTACAATTATCCTTGGTATTTTTTCATGACAATTGACGCATTAGTACCGCCGAAACCAAAGCTATTAGACATTACTGTGGTTAATTCACGTTCGGTTGGCTCGGTAATAATATTCATGCCTACTGCTTCATCTGCAAGCTCGTCGATATTGATACTTGGTGTAATAAAGCCGTGTTCAAGCATAAGTAGTGAATAAATCAACTCTTGTGCACCGGTGGCACTTAATGAGTGACCAGTCATGGATTTGGTTGAAGAGATAGCCGGGATATTATCTCCAAATACTTGTTTGATTGCCCATAACTCTTTGACATCACCAACTGGAGTTGATGTACCATGAGTATTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4685-4892 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASR01000032.1 Gilliamella apis strain A-TSA4 NODE_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4685 28 100.0 32 ............................ AATGGACGATAGAGGAAACGATCAAAATCTTG 4745 28 100.0 32 ............................ TGTCCAGAGCGTGAATGGTAAAATTGGCAACA 4805 28 96.4 32 ....................C....... CTTCAGGTACATACAACCCTGTTTTTGGATAA 4865 28 92.9 0 ...C...A.................... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTTACTGCCGTGTAGGTAGTTTAGAAA # Left flank : CCATCCAATAAATCGCTAACGTTAGTTATAACATCAGCTAGTTCCAATAATAAGAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAATGTGCTGACAACTGCGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGAGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAATTGAGGAACGGGGTTTTTAAAACTTAAATTCCTACTTATTGTTAACCCTTTTTTTAACTTAAAATAAAGTATTTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTGCCAACAACATTTATAGTATATTGGATTCTA # Right flank : ATACACAGCTTATTGAGTAGGTTAAAATGGTGATTTTTTTAAGAGGGGGGATAAAGGATCTATTATTTCTAATAAACAGAAAATAATCGATGCTGTTTTCGGGCTAGCAGTATTCTTCTTTACAAAAGTTAACAATTAAACCATCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAACATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACGCAACACGCAACACGCAACCTGCCCAACCTATAATTTCACCTCTCTAAAGTTAAGCTCATACCGTTTATTATTTCACCGCAGTTTATTATTTCGAAAATTTCCGAAATTCCGGCAAAATTTTTCAAAATTTCTTAGTTTAGCCTTTTTATCTCGGCCGATGGTTTTGGTATTAACCGTAGTTGTTTTACAGTCTATCTCTTTTGC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18025-18231 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASR01000004.1 Gilliamella apis strain A-TSA4 NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 18025 28 92.9 32 ...T...G.................... TACACAGACAAATTTAATAATATTCACGAGGC 18085 28 100.0 32 ............................ GATTTCACAAGAACAACGCGAATTTTTTACTC 18145 28 100.0 32 ............................ AGCATTAATAATTTGTGATGCGTTTTTTATCA 18205 27 92.9 0 ............A...........-... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : CCCTGCCAAGGCAATGGCATTGACGTTAACGAAGTGGGTGTTAAAAAACGATTTTGTGGTGCGACATTGGCAATGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGTTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCGCAAAACAACAAACGTCCGAAACTCAAACAACCCAAAAAATTTTGAGGAAAGGGGTTTTTGAAATCTAAAAACTTCCTATTACTAACCCTTTTTTTTGACTTAAAATAAAGTATTTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : ATTAATTAAAATTATAACACTCGAAATCCACCAAACTAAAAAAGTTTAGCAAAGGAGTTTTTTAGGTGAATAAATTCACCACATGTTATAATTATGTTTAATTATAATTAACTCTGTAAATATGATGAATAATAGTACAATTGATAACCAATTAAATGAAAAAATGGTGCTTATTTTCAAAGCATTATCTGATCCGGTTAGAATAGAAATCATTAAATATTTAAAAAGTATAGAAACAGAGGTTATCTGTGGTGAAATTGGTCAAGCAGTTGGTATTAGTAAACCCTCAGGAACTTATCATTTTAGGTTATTACAACAAGCAGAATTAATTAATGTAAGAAAGAGTGCTAGGGAAAAATATGTATGGCTTAATAAATCAACATTTGATAAATATGTTACCGGGTTTTTTGATAATCTTTAAAATACTCAAATATTGATTTATTGTTGAATTTATTGTTTTGATTTTATCAAATATTATTTTTTATCCCTTGTAGTTAACC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1028-1235 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASR01000012.1 Gilliamella apis strain A-TSA4 NODE_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1028 28 96.4 32 ............T............... TTAATTAAACAAAAAGCGTTAGATCGTATTAT 1088 28 100.0 32 ............................ AGCACGCTAGTAAAAGATGTCGGTGCTGGCGG 1148 28 100.0 32 ............................ CGCATTAGATGAAAATAAACTAAATACAAACA 1208 28 78.6 0 .................CTTT....TT. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : AGGTATTGAAGCTGAGGATAAGAAAAATAACGTTAGGGCGATAAAAAACGATTTTGTGGTGCGACATTCGCAACGTGCTGACAACTGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGAAGGCGGAAGGCAGTCACGTAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCCCCGTATAGAAACAACCGCAAAACAACAAAACGTCCGAAACTAAAACAGCCAAAAAAATTTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATTATTAAAAATCAATATATTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : AGTAATTAAAATGGATTTTTAGTATTTAAAACTCGCTGTTCTCAAATTTATCTATGAAATAATTAAAACGCTTATATAAGCGTTTTAACTCTGATTAATATCATTATATCTACTATAAACTATTAGAACATTAATAGTTGTACAATTAAATTGCAGTAATATAGACCTGATTATTCAGTAAGTTTTTAGGATCAAACTGTTGTTTAATTGCACGCATTAATTGGCGATTTGCTTCAGGAATTGCAGCATTATAATAACTTACTTTCGCCGTTCCGATGCCATGTTCTGCTGAAGGCAATCCTCCTAATTCAAGACATTTTTGATAAAGCGCTTGGTGAACGTTTTGCAGATCAGATTGCCATTGTTTGTCATCACGATTATCACGCAAAATGCATAGATGAATGTTACCATCACCAGCGTGACCAAAGGCTAACATACGCATTTGAGTTTGTGCTTCTAGCTGTTTGGTGAAATTGATAAAATCGCTAATGCGATTTATT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 51254-51461 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASR01000012.1 Gilliamella apis strain A-TSA4 NODE_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 51254 28 100.0 32 ............................ ATTCGGTCAGTTTGCCTAACATTACAGCCGAC 51314 28 100.0 32 ............................ TCTGAGCCGAGGTTGGTGACCGGCAGCGGTAC 51374 28 100.0 32 ............................ ATAAATAAGTGTTTCGAAATACCCATTAATAG 51434 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GCTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : GTTTTAAAACTAAAATTAGCTTGCTATAAACATAAACGTTTATTTTGGCAAATAAGTTTAGTGCTTCCTATTTAGCGACATCCGCAAAGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGAAGTTTGCCAAGGAGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTTGTAAAGAGGGTTGGCGGCAACCCTCTTAACTCGGACGTATTCACCGCATAGAACTAGCCACCAAACAACAAACGTCCGAAACTCAAACAATCCAAAAAATAAAGAACCAAAAAATTTTGAGGAAAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATGCATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTGCCAACAACATTTATAGTATATCCGGCTCTA # Right flank : ATAATATTGTATAAATTAAAAATCCAGTAGCTCAGGGTTAATACCTAGTGCGCTAGCTATTTTAATACGTGTTGCTTTCCTTAATTTTTGACTTTTTTCATATTGAGAATATGCAGATTGACTGATACCGATTTTATTGGCAACTTCAACTTGAGATAATTTTAGATATTCTCGCCATGCTTGAACTGGTGAATAATTATTATCAAAAACCAGATTAACAACTTCGTTGGGCACACCAGTATCAGTATTAATTTGTTTAATATTCGCTAATTCTAAATATTGTGTATAAGGCATAACCACAAACTGTGGTTGCCCTTGTTCATTATTAATAAACTGTATGTTATTAGTAAGTGCGTTCATCTCGTTTTTTCACCTCTTCGATAGAAACAATATGAATAATGCCATCAAAATTAAAAAACACTCGATAATTTCCAACTCTTAATCTACTGATATTTGTAGTTAGTCAGAGATTTTACATTAATGCAATTAGGCATGTTTGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3323-3470 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASR01000013.1 Gilliamella apis strain A-TSA4 NODE_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3323 28 100.0 32 ............................ TTCCCCGCAATTACGAAATGATTTAAATAGTA 3383 28 100.0 32 ............................ ACAAACACTAAACGCCTAGGGAATTGGGTAGC 3443 28 96.4 0 .........C.................. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCTGTATAGGTAGTTTAGAAA # Left flank : TTAGGATGTTAAACAATTATTGCCTTGCCAAGGCAATAGCGCTGACGAAGAGGGCGATAAAAGCGATTTTGTGGCGCGACATTGGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAGACCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTCAAAGAACTAAAAAATAAAGAACTAAAAAATTTTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAACACTTTGAAAAATGGCTCAAAAAAAAGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATACTGGATTCTA # Right flank : ATCGAGTTACAACTCCTCAAATTGCAGAACACGGTTCACTACCGCGCAGGCGGTTTTTTTTATGCCTGTCATTCGACCACTCAGCAGATGAAGTAACCAAACTCTTACAAAGAGCTAAAATTATCATTGATGTACAAAAAAGCAACGATAAGCTACGTAAAAATTGTAGGTAAGGATTATTTTAAAGATGATTATGAGAATGGAAATTTGTTTCAATATTGAGTGACCTTGTTTGTTGATTATGAAGCTAAAAATGATTTTGGTGTTGATTTAAAAAACACTTCAATATGTTATTTTTATTCTATTTTAATAAGAAATGATTATTTTATGTTCCCAGATTTTGATAAAATGGCGATCTCAAATAAAATATATAGTTATATTGATTTAATGACATCAATAGAACATTTTCATTCTTCTTTATTTGATATTGGAAAAATAAGTATTGTCGATAAAATATCGTACCAGATTGATAAAAATAATTTCCTCTATTATGAGAATGA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCTGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 31547-31279 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASR01000007.1 Gilliamella apis strain A-TSA4 NODE_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31546 28 100.0 32 ............................ TAGAGGCGTGTGAACGAGCAGATATAAGATGG 31486 28 100.0 32 ............................ TGCAATCAAAGAGCTAAACGAACTTAAACGAC 31426 28 100.0 32 ............................ ATTTTAAAAAAGATTTTTCTACACACATTTTT 31366 28 100.0 32 ............................ GTACAAAAAACGGGTATAAGTGATGCGCTAGA 31306 28 92.9 0 ....................TA...... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : GAATTAAGAAAAATAACATTAGGACGATAAAAGCGGTTTTGTGGTGCGACATTGGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACGTAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCGCCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTCAAAGAACTAAAAAATAAAGAACTAAAAATTTTGAGGAACGAGGTTTTTAAAGCCTAAAATCCTACTTATTGTTAACCCTTTTTTTTAACTTAAAATAAAGTATTTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATATAAGTGGCGGTATAGGTAATATCAAGTAGTACACCGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTAAGAGGGTATAAAAGGTCTATTATTTCTAATAAACAGCAAATAACCGATGCTGTTTTCGGGCTAGCAGTATTCATCTTTACAAAAGTTAACAATTAAACCATCAAAAAAAGTTGCATGGTTTTTTCCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAATTTCATCTTTCTAAAGTTAAGCTCACACCGTTTATTATTTCACTGCAGTTTATTATTTCAGCAATTTCCAAAATTTCAGCAAAATTTTTCAAAATTTCTTGGTTTAGTCTGTTTATCTCGGCCGATGGTTTTGGTATTAAC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 604-396 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASR01000050.1 Gilliamella apis strain A-TSA4 NODE_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 603 28 100.0 32 ............................ CGCTGAGACAATAAGAAAACATATCAAAAATG 543 28 100.0 32 ............................ ATGTTGTAGGTTTATAACCTGCGGATGGAGTA 483 28 96.4 32 ........T................... ACTTGAGTGGATGAATGGCGCATTTAATCGTG 423 28 82.1 0 .....................AAGA..T | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.6 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : GGATAAGAAAAATAGTGTTAGGGCGATAAAAAGCGATTTTGGGCGCGACATTCGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCAGTTGCGTGGTCGCCGCGTGAGATGGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAATAAAGAACTAAAAAATTTTGAGGAAAGGGGTTTTTGAAAATTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATTTTTAAAAATCAATATGTTGAAAAACCTCTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATATAAGTGGCGGTATAATTAAGAAATACACTGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTAAGAGGGGATAAAGGGTATATTATTTCTAATAAACAGCAAATAACCGATGCTATTTTCGAGCTATCAGTGTTCATCTTTACAAAAGTTAACAATTAAACCGCCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAATTTCACCTTTCTAAAGTTAAGCTCACACCGTTTATTATTTCAC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5455-5128 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASR01000050.1 Gilliamella apis strain A-TSA4 NODE_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5454 28 100.0 32 ............................ TAAATCATTAGAGGAGGCGCTAATGGATAATG 5394 28 100.0 32 ............................ GTTGAAAGAAACGCTACCGGTAGCGCCTGAGG 5334 28 100.0 32 ............................ GAGTTGGTACAAAACGATGACGATTTTAAAGC 5274 28 100.0 32 ............................ AGACGTCACCACGTTTCTTGATCGACATTTTT 5214 28 96.4 32 ....................T....... AGCTGATATTTTCAGGATCTTTAATGGGCATG 5154 27 92.9 0 ....................-.A..... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.2 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : CGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCGCAAAACAACAAACGTCCGAAACTCAAACAACTAAAAAATAAGGAACTAAAAAACTAAAAAACTTGAGGAGAGGGGTTTTTGAAACTTATAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCT # Right flank : TATATAAGTGGCGGTATAATCAAGAAATACACTGCTTATGGAGTGGGTTAAAAATGGTGATTTTTTAAGAAGGGATAAAGGGTCTATTATTTCTAATAAACAGCAAATAATCGATGCTCTTTTCGAGCTATTAGTGTTCTTCTTTACAAATGTTAACAATTAAACAGTTAAAATAAGTTGCATCGAGTTTTTTCAATTACTATAATTTTTCCACTATATTTATATAAATGGATAGATTTTATACTTTTTAGTATAAAATTGTAAATAAATCATTAATTTAATTGACAGGAATGTCGGATATGTGTTATAATTTAAAACACCAAACACCAAACACCAAACCTGCCCAACCTATAATTTAACCTTTCTAAAGTTAAGCTCACACCGTTTATTATTTAATCGCAGTTTATTTTTTCAACAAATTCGGCAAAAGTTTTCAAAATTTCTTAATTTAGCCTTTTTATTTCGGCCGATGGTTTTGGTATTAACCATGGTTGTTTTAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 49595-49443 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASR01000008.1 Gilliamella apis strain A-TSA4 NODE_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49594 29 100.0 32 ............................. TGGCCGAAATTAAATTATATCTACATGAAAAG 49533 29 100.0 33 ............................. TTCATCAAGTTGTTTTTGAGCGGAAATGGATTT 49471 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 3 29 98.9 33 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : AGGACAAAGTTCACAAGCTAAAAGTATTATATTGAATTTTAATAAATGCTATAGCCGTGAACAATTCAATGCTGAATGGGATAAGGAAATTGAAGTTTCAACCCGTTTATCAAAAGATAATATTGATCTTTATTTAGCATATCAACAAGATGGAATAGTTATTCCTTACTGTAGTAGTAACGAATACGCATGGGAACAAAGCCATGTTACAATTAGTGCATCTAAATGGGCTAGAATTAAAAAAGCCGTCCCACAACTTGACCAACAGCATCTAGAAAAATTGAGACAACAAATACATAGACCAAATGCCATTATTGTGTTAATTGAGACAGAAAAAGAACCTTCTTTTTATTCTAAGGAATTAGGCTTTTATCTAAATTAATTTAAAGTTAAATATTAATAATTTTAACTTGCAATAAGTTGAGTGAATTTCATACAGAAAAATCGGTGAAAAATTACTCCCTTATATTTCAATTATAAAACAATTAGTTATAATTAGA # Right flank : TACTGGCTAATTCGTTAAAACTACCTGACGAGATTTGGGTGAGGATGGAATACTTTGATCATCTGCAAAAATCAGTAGTTCGCCGTCGCTATATCTAACGTTTTATGATTGATGGTGAGGTTAAGCCAATGTTAGCTGTATTAGAGTATTTAAATGAACATAAAATAAAACCCAACCGCCGACACGTTGGGTAGGCTGCGCGTGGGATTGGAGGTCCTGTCGGAGACTGCCCGCGAATACCTTTTAAATAGTATAGGTAAAAAAATGACTGGCGTAAATATTGAATTCAATGTACAAGATGCACTAGACGCACTAATCAACATAGAATTTGCTTTGCTCGATACACATGTTTTATTTAATCATATAAGTGAAACATTACTTGATATTCATGAAGCACGCTTTAATACACAGGAATCACCTGATGGTATACACCATGGCAAGCATTATCACCATGGTATCAAGAAAGTAAGCCAAAACAAAAAGATAAAGCTTAACGCTCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67625-68265 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASR01000008.1 Gilliamella apis strain A-TSA4 NODE_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 67625 29 100.0 32 ............................. GGGTATGTGCAGTCAAATTAAAGGATTGCAAC 67686 29 100.0 32 ............................. GGAGACTTATCCGAACTTGTTGAATTTGGTGA 67747 29 100.0 32 ............................. ATCAATAAAAAAATCGGCAGGGCTTCTATAGC 67808 29 100.0 32 ............................. CCACGAAAACCGGGGATTAAACCTGTCAATAA 67869 29 100.0 33 ............................. CTACCGCCTTTGTGAAAAATAAAAGCGCCACCC 67931 29 100.0 32 ............................. TTATTAATAACTAATTTATAATTTATATGATA 67992 29 100.0 32 ............................. AAAAACATTAGAGCCTTTACTTAAAGCGTTAG 68053 29 100.0 32 ............................. CCTTTTTACGTGATGATGGTAGTAATAATACG 68114 29 100.0 32 ............................. ATTATGACAAGCGACTTGAAATAAAGAAACAA 68175 29 100.0 33 ............................. GACTAAATAATGGCAAAATTTAAATTAGTTGCA 68237 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.4 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTGTCTGCTGGTGGTATTGAACCGCCACCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCGCCTAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAAGTTAATGTTCTTTAAAAATTAGGAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAATTATCTATATTTAGA # Right flank : TTTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTGTAATGATAGCGTTTTATAAAAATAAAAACTAATAATCATATATATCGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAACATTAATCGTAAATTCATTATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCAGGCAAAACAACAGCCATCAATACTGTTGCTCGTATTTTAAAACAACATCATATTTCTGATTTACAATTTACCCGTGAACCTGGCGGTACACCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACAGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //