Array 1 504-1991 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQEK01000013.1 Neisseria meningitidis strain M39142 M39142_S5_cleaned_ctg_7877, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 504 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 570 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 636 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 702 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 768 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 834 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 900 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 966 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 1032 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 1098 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 1164 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 1230 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 1296 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 1362 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 1428 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 1494 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 1560 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 1626 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 1692 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 1758 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 1824 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 1890 36 100.0 30 .................................... TGCTAAGGTTTAATTGGCATTTTCTTTTAA 1956 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //