Array 1 189-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGDA010000018.1 Bifidobacterium longum subsp. longum strain DLBL 07 NODE_148_length_213_cov_54.6395_ID_295, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 188 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 124 36 100.0 28 .................................... CCAATAAGCAGACGTTGCGGCCGCTCAC 60 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 3 36 100.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : GCTTGTCCGTGTCTTTCATCAGTG # Right flank : CTCTGATTTTCATCATAATGAGTAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 26-254 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGDA010000003.1 Bifidobacterium longum subsp. longum strain DLBL 07 NODE_143_length_280_cov_52.5163_ID_285, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================== ================== 26 37 100.0 27 ..................................... GATGATTTGCGACTCTTCATCATGAGG 90 37 100.0 27 ..................................... CGCCGCTGGAAATCAGGTCGCGGGCCT 154 37 100.0 27 ..................................... CCGAGTATCGCAATGCGATTATCAACG 218 37 97.3 0 T.................................... | ========== ====== ====== ====== ===================================== =========================== ================== 4 37 99.3 27 CGCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG # Left flank : CTGATGAAAGACACGGACAAGCTCAC # Right flank : TTCACACGCGACGGGATTCCCGGCGC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 145772-147862 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGDA010000070.1 Bifidobacterium longum subsp. longum strain DLBL 07 NODE_2_length_420115_cov_83.252_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 145772 36 100.0 28 .................................... CCAATAAGCAGACGTTGCGGCCGCTCAC 145836 36 100.0 28 .................................... TCTGATTTTCATCATAATGAGTACTTTC 145900 36 100.0 28 .................................... GGTCCCAACTCCTCCTCAATCGGCTTAA 145964 36 100.0 28 .................................... CGAACGTGAGCCACTCTTGCTCGATGTT 146028 36 100.0 28 .................................... CCAGTTCGGGAATCCCGTCGCGTGTGAA 146092 36 100.0 28 .................................... ACGTTGATAATCGCATTGCGATACTCGG 146156 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 146220 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 146285 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 146349 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 146413 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 146477 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 146541 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 146605 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 146669 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 146733 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 146797 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 146861 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 146926 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 146990 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 147054 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 147119 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 147183 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 147247 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 147312 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 147377 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 147442 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 147506 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 147571 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 147635 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 147699 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 147763 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 147827 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 33 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACAACAGATT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCAGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCGTGGAACACATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCGGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //