Array 1 65751-64658 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAA01000001.1 Neisseria dumasiana strain 114725 NODE_1_length_152757_cov_50.7447_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 65750 36 88.9 30 .GG.GG.............................. GCTACTGCTGTTTTGGCCGTACAAGCCCGG 65684 36 100.0 30 .................................... CCGTTTTGCTGTTTATAGCGGTCGATACAT 65618 36 100.0 30 .................................... AAACTCCGGCTTGCTGTCCGGCGGAATCAG 65552 36 100.0 30 .................................... TCCATATTGATGCCGGCGCGCGTGCTGCCG 65486 36 100.0 30 .................................... CGCGCGGATAGTGGCGACGTAGCTCCCCCG 65420 36 100.0 30 .................................... GAATCGGTATATCGTCTTACACTTCGTTTA 65354 36 100.0 30 .................................... CAAAACCACAAGCGGTCGGATACCGCCACG 65288 36 100.0 30 .................................... ACCGAAATACTTCGATATTGCATCAGCGTG 65222 36 100.0 30 .................................... GTGGCCTGTGAGCTGGGCTTGTTGATGTGG 65156 36 100.0 30 .................................... AAATATGCTGACTTGGATATTGCTGTCTAC 65090 36 100.0 31 .................................... TCCGCCATCTGCGCGGGTACGGTTATTCCGA 65023 36 100.0 30 .................................... GTTTGGCCAACCGGAATAGGGCTTGTTTCA 64957 36 100.0 30 .................................... CCTTGACCCGCCGTTAGGTATATGATGCAG 64891 36 100.0 30 .................................... TGTGCAATCCTTGACCACTTGGAGATAGTT 64825 36 100.0 30 .................................... TTTTGTACAGGCCGTATGCGCTTTTATCGA 64759 36 100.0 30 .................................... CTACATAAATGCGCCATCCGTATTTATTAT 64693 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 99.3 30 GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Left flank : ACAGGGTCTGAAAAGAGGCTGCGCAATTCTTTCCAAGCGAGATAAAAAATGTTTTTCAGAATCCTCATCAGTTTTTGCCTTTGGGTATTCAGACGGCCTGATACTTTCGCGAACATCGGGCAAGGGGTTAAAATATGGCTAACCAGTTAATATTCATGCAGTTTTTATAATCAGGTCAAGCCTAAAGTTGATTCACGATATACAGTTAATCAACTTAAGTTTAGTAACAAAATCGTAGATACTGTCCTTCCCCGTCAAACCGTTGCGGGCGGACATGTACTCTGCCTCTACGATTGTGTTATTAAAATTGGGTAGATTGATTATAGAACCCTTGCAAAACTTGGGTCTGCAAGCGTCTCAGATTTTTTCTTGAGATTGTACAAAGGTTTCAGGCCGTCTGAAAAATCAGTTACCCGCTTTTTCAGACGGCCTTTAGCATCAAATGTTCGCGCCTTTGCTGCAAACGCTGCGTTTTTTATGGAGCTGAAGCAGGTGCAGCA # Right flank : ACTTAAACAGGTAAGCCTTATTTCATAAGGCTTACCTGTTTTATTTTGATTAAAAAAACGGCTTTAAAAAAGCAAAAGTTGGTCGGCATTGACCTTTTTTTCGCGGGGTTTGGGTTCTCCAATAAGCATGACCATACTTGCGTATTGCTTTTCTGTTACTTCCAAATAGCGTACTTGGCCTTCTTCCGGTAAATGCAGCATCAACCTTTTGTGGTGTTTCTGCAACGCGTCCCTTCCTTTTACAATGCGTGAATAAACTGATAATTGCAGCATGTGATAGCCGTCTTTCTGCAAAAATTTACGAAATTGGTTAGCTGCTTTTCTTTTGGCGGCAGTGGTTACAGGCAAATCAAAGAAAACAATTAAGCGCATAAATTTGGCCTCACTCATAATCATGTACCTTTAAGCGCAGCATTTGCGGTAGCTTTAACAGTTTGGGCTTGTTTTGGCTGACGGCCGTCTGAAAAGATTGGATGGTGCGGTCTATGGCAGCCAATACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 10465-9505 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAA01000002.1 Neisseria dumasiana strain 114725 NODE_2_length_144472_cov_45.0723_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 10464 33 97.0 31 ................................T ATTTGCAGATCCGTTATGCCGTCTATATAAA 10400 33 97.0 32 ................................G CCATTGATGTCGTTAAGTACCTCGGTTTTGGC C [10397] 10334 33 97.0 32 G................................ CATGGTAAACGTGAAGCCGACAAAGGCGGTTT 10269 33 93.9 33 A...............................C TTTGAAAATTGTTCGGCTTGCCTTCCCGCTTCC 10203 33 97.0 33 C................................ TCGAAGACCAAAGTATCCTGCATCGCCAGTTGC 10137 33 97.0 33 ................................C GGCATAGGGGATATACCGTTAAAGTCAAACTTA 10071 33 97.0 33 ................................T ACATCTTTATCAATAAAAGAAACCCTCTCTTTG 10005 33 97.0 34 ................................G CCTTATCACCGGCCACAGATTTGGCATAATTTTC 9938 33 100.0 34 ................................. GGCTGCTGAAGCTGCTGCTAAAAAGCTTGCAGGT 9871 33 100.0 34 ................................. AACCAACTTGGCCAGCGATAGCGGAAGTAAGGGC 9804 33 97.0 34 ................................T CAACTTGTGAAGGAGCCTGAAAAACGGGAACGGG 9737 33 100.0 34 ................................. CATGAAAAATATCATGCTGGGGCGTATAGCAAAA 9670 33 100.0 34 ................................. GACGGCCTATAACGAGCAGCAGCTTGTGATTGAA 9603 33 100.0 34 ................................. GTAGAATACGGGAAGGTTGTTAATTTGCAATCAC 9536 32 84.8 0 ............C......C....A..-....C | ========== ====== ====== ====== ================================= ================================== ================== 15 33 97.0 33 TCAGCCACCTTCGCGTGGCTGTGTGTTGAAACA # Left flank : GCTTATCAGAATGCACCCGCGTCGGCTTTATCCGATGAAACCGCCATCCCGTTAATCTAACCTTATCTCTGCTTAGCTTGGATTGAAGGCCGTCTGAAAACCGCTTTTCAGACGGCCTTCACTCTAAAAGCCGCAGACGCAGGTTTTGCAAAGGTTTCGATTCGTTTGGCAACTATATAGTTAATCCACTTAAGTTTAATAACAAAACCTTCATACTCGGGCTTGACCCGAGTATCTTGAGTTTCAGCAAATTTAGGGGATATTCGGGCCAAGTCCGAGTATGACCGATGTACTATAGAGTGATGCCGTCTGAAAACGGCTATATCGCGCCAACCTGCGGCTCACATCAAAACACACCGAGATTAGCGAAGTATTTTTGTTTGGCGATTCAAACCGTTGCCAGTGCATAAGCCGTGATATAGTTCGGCATGGCCTTTTTACAACCTGTTTAGCGCAGATGATGACTTGAAGCCGCGTGACACAAGGGATGGAGAGAGGGC # Right flank : TTCTCAAAACACAACAGGCCGTCTGAAATGTTCAGACGGCCTGTTGTTATTTCAAACGTCTTAATTAAATACGTTTCGCCAACGCTTCGGCTTTGCCCACATACAGCGCGGGTGTTAAAGCCAGCAGCTGCTGTTTGGCATCGGCGGGGATGTCCAGCGATTCGACAAACACTTTCAGCACTTCGGGTGTGATGCCGTCTTTGCCGCGGGTAAGGTCTTTCAGTTTTTCATACGGATTGGCCACGCCGTAGCGGCGCATCACGGTTTGAATCGGTTCGGCCAAGAGTTCCCAAGTGGCGTCCAAGTCGGCGGCTAGGGCGGCGGGGTTGGCTTCCAGTTTGTTCAGGCCGCGCAGGTGGGCGACCAAGCCCAGCACGGTGTAGCCTGCGCCCACGCCCATGTTGCGCAGCACGGTGCTGTCGGTGAGGTCGCGCTGCCAGCGGGAGACGGGCAGTTTTTCCGAAAGGAAGCCCAACACGGCGTTGGCCATGCCCAAGTTG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCACCTTCGCGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 2 24784-16240 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAA01000002.1 Neisseria dumasiana strain 114725 NODE_2_length_144472_cov_45.0723_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 24783 33 97.0 33 T................................ AGGTATTGACAAGTTGATGTCGTATGTTTCAAC 24717 33 97.0 33 G................................ AGGAACAAGCTGAAATGGACGCGAGAACTATTA 24651 33 100.0 34 ................................. AAAGACTTTCCAATATTGACCGCAGCTACGGTTT 24584 33 97.0 32 G................................ GCTTTTGGCTTGACCCCCCGTGTTACTAGCGG 24519 33 97.0 33 G................................ TCTTTCAACGCATCGATTTTGCTTGATATGTTT 24453 33 97.0 32 T................................ TTTCTTAGTTACCTTTCAAATTTACGTTTCAG 24388 33 97.0 34 G................................ AGAATCGGCATACTCCCATGAACAGAGATTCGTA 24321 33 97.0 34 A................................ ATCGGACGGTGAAAAACGGTTTGCCAAGCGGATG 24254 33 97.0 36 G................................ ATCCTGAATCTTCTTGATGTCTTCGGGTTTGACAAT 24185 33 97.0 34 G................................ GTCTGTCTCTAAACGGTATGATTTTGCATGTTCT 24118 33 97.0 34 T................................ AAATGTTTGTGTAATCCAACTTGCACCATTTCGG 24051 33 100.0 33 ................................. CCGATGACAATCAGGAAGCACGAAAAATTGCGC 23985 33 97.0 32 A................................ AGATAAACCTAATTCTTCGGCTCGCATTGTTA 23920 33 97.0 33 .....T........................... ATTGCAGGTAAATTATAAGCCCATTCTGCAAAA 23854 33 97.0 35 T................................ TACCATTTTTTTTTGTTTATCCCTTTTATTTAAAA 23786 33 97.0 34 A................................ AACTCAACAAACCAAAGAAGCCATTTATGAAAAG 23719 33 97.0 33 G................................ TATTTTGTGTTTCGATGGTTTGCATTATACAGC 23653 33 100.0 34 ................................. CAATGAATCATGCGTGTAGTATTCAAGCTTAACG 23586 33 100.0 34 ................................. TACCAAAACTTGCAAGCGTAAATTGCATTTAATT 23519 33 97.0 34 T................................ TGAAAAACAAGGAAATTTTTATATTGACAATTTC 23452 33 97.0 33 A................................ AGTAGGGCTTATACGCAAGCCTTTATTTGACCC 23386 33 97.0 34 G................................ AACATCACTTTTTTCAAAATACAAAATACCATCT 23319 33 97.0 34 A................................ CTTGCTTATCCCCATTCAAGCGCACAAACACACC 23252 33 97.0 33 G................................ TAATTATCCTTATTTAAAGACTTTATATCATGA 23186 33 97.0 33 T................................ AGATGATGAGTTCGTTATCCGTGCATCAATGGA 23120 33 97.0 33 G................................ TTTGCCTACTCCGCCGCTTGTTGAGTGGTTGCA 23054 33 100.0 32 ................................. AAGCTCAACACGAACCCATTGGCTATCAACAT 22989 33 100.0 32 ................................. AATGGTCGGCTCAAACATTTTTTCATCAAGCG 22924 33 97.0 35 A................................ ATGGATGCCGCCAAGCTGCTGGGCGAATGGTTCGG 22856 33 97.0 34 A................................ GGTATATACATTTCCCGGAGCTTGGCAATATCAA 22789 33 100.0 34 ................................. TCTGTTCTCATTCAGAAATACCAAAAATTGACGA 22722 33 97.0 32 T................................ TACCAACCATGATGCTCGGCACATGATTTTTT 22657 33 97.0 34 G................................ GGCTTGTTGAATAAGTTTAGACAGATAATCATCA 22590 33 97.0 34 G................................ AAATGCTGTTTGATAAAGAAAAGCAACATTTGAA 22523 33 97.0 33 A................................ GTTGAGTGGCTTGCGGATTGAAAGAGCTTTGCC 22457 33 97.0 33 G................................ AATGCCGGCCGCCTCGTAGTCATCGCCCACGCT 22391 33 100.0 33 ................................. ACATCGAGGGCAGTATCGAAGAGGGATTGGGCT 22325 33 97.0 34 T................................ AAGCTCTTTGATGCGCGCTCCGAATTGCGTAATG 22258 33 100.0 34 ................................. TCCAAGATGCTTTGCAGAATCAAGCTTTGGCGAC 22191 33 97.0 33 T................................ TTTATACGGGTTAAAGGGAAGGCCGTCTTTAAC 22125 33 97.0 35 G................................ CGGTAATGGTAAAGGCGATTCGGTAGGCGATGATA 22057 33 97.0 33 A................................ AGGCTGCCAAGTTTGCGGCTGGCATTATTACTT 21991 33 100.0 32 ................................. ATTTTTATACCCGCGTTTACCGGGAGAAACCT 21926 33 100.0 33 ................................. TGTATTTCCCACCATCAAAACTCCCAAATAATT 21860 33 100.0 34 ................................. ACCGTCTTTATCGGTGCATTGGAAAGAACACTCA 21793 33 97.0 33 T................................ AACATATCCATCATACATTAAATTTTGCTGCGG 21727 33 97.0 34 T................................ ACGGATTAAGGTTTCGCGCGCTTCGCGTTGGTTG 21660 33 100.0 36 ................................. AGGCTCCCATTGCGGATGCCGCCAAACCGAATGCGT 21591 33 97.0 33 A................................ ATAATCGGGATATTGTGATACCGCACGAAATTT 21525 33 97.0 35 T................................ ATAATAAATCCTTTTTTTTTTAAGTTTGTTTAAAA 21457 33 97.0 34 A................................ TTTGTCAAAGATATATTCCCCGCCGTGGTAAATA 21390 33 100.0 34 ................................. CACTCCGCTGCAAATGCTGGCGTATCTCATGATT 21323 33 100.0 34 ................................. CGTTCCCAATTGGTCAGGACGAACAAACACCGAT 21256 33 97.0 33 T................................ ATTTGGCCGCCGTATGCAAACGGGCAAGCATCA 21190 33 97.0 34 G................................ AGCTTTTGGAAATCGAAGCTGCTGAAGAAGCTGA 21123 33 97.0 34 A................................ AAGCTGAAGAATTAGGCTTGACAGAATCCGAAAC 21056 33 97.0 33 G................................ TAATACTGGTAATACTGGCGGTGGTGGCAGTAA 20990 33 97.0 32 G................................ AATATGTTTTTGTTCGCTACTTCCTTGCCCCA 20925 33 97.0 32 A................................ ATTTTCAATTCCTTTTGAAAAAAAAAAGCCTG 20860 33 100.0 35 ................................. GGGCTGATTGCGGCCAATCCGCATCTTCCTTTAGC 20792 33 97.0 34 A................................ TCGTCGGCATAGTGGCGGTCGCCGTGCAACTCTT 20725 33 100.0 33 ................................. GCTGAGGCGGTCGGTGTTACCGAGCATGATCAG 20659 33 97.0 35 G................................ TGCCTGCATTTGGAAATGCGGGTAGAAACCGAGCA 20591 33 100.0 35 ................................. TGCCTGCATTTGGAAATGCGGGTAGAAACCGAGCA 20523 33 100.0 33 ................................. AGGCTTGGTGCCCGAAGACTTGGACGAACTGGA 20457 33 97.0 34 T................................ TCCTCGGGCATCGAGCAGGCAGACTACTTGCTCT 20390 33 100.0 33 ................................. AGGCGAAGTTGGTGGTGGAACATGGGAAGTTAG 20324 33 100.0 33 ................................. CATAAACCGCTAATAATGTTTGCACCGAACTCG 20258 33 97.0 33 G................................ ATAAAAGGGTTTATGACCATTGGCCGTTTATTG 20192 33 97.0 33 T................................ GGTGAGGGTGCGGATGTTTTCGTTATCCATTTT 20126 33 97.0 33 T................................ AATTTGGCATTCGGGAAAACCATACGATTAGTA 20060 33 100.0 33 ................................. AGGCTGAATTGAAAAACGGTCAAGTCGAGTTGA 19994 33 100.0 33 ................................. ATCGTTTTGGCCAGCTTCTTTGATTAAGTAGCA 19928 33 97.0 34 T................................ AGGTAAATCCGTTTCCGGTATGCACTCCCTTAAA 19861 33 97.0 33 A................................ TCTCGTCAACCTCATAACCAACGCCGCGTCATC 19795 33 97.0 33 T................................ CAGTCTTTCGGCGACAGCTCACGCATCATGCTC 19729 33 97.0 33 A................................ ATTGTAACGGCGCTGATTGGTCGGATTGGGAAG 19663 33 97.0 33 A................................ CGTCCTTAAAGAGGCGGTCTTGCGCCCGCCATA 19597 33 97.0 32 A................................ ACTGACTTTTTGTATCAGTATGGCGCAAAAAC 19532 33 97.0 34 A................................ ATTGTGGGTGTTGGTTGAATCTGCGTCTTTGTTG 19465 33 97.0 34 T................................ TTGGATGACCTTGCCGTCTGGTGTCGTCCGTGTG 19398 33 97.0 35 G................................ AATTCTATATTTTAAAAATGTATATAAGTATTTGA 19330 33 97.0 33 T................................ GGCATTTGCATGACTGCCGATTGCTACGCTGCT 19264 33 97.0 34 A................................ ACAGATGGCAGCCACGGCGTGGCATACAGGCCGA 19197 33 97.0 33 G................................ CTTTTTGGGTGTAGGGGTGTAGGCTGCCCGTTT 19131 33 97.0 34 T................................ TTCCGACGGCACACCGTCGGCGGAGGTAATGGCA 19064 33 97.0 33 A................................ AGGAGCGAACGCAACCATAGCAACGGCAAAGGC 18998 33 100.0 34 ................................. AATTTGCCAATGGCCTGAAACCGACTACCGTTTA 18931 33 97.0 33 A................................ ATCTTAAAAGCCGTCCGTCCGAAGATTACCCGT 18865 33 97.0 32 A................................ AAACACCGCCGTTTCCGTTTGTTTTCCGCCGC 18800 33 100.0 34 ................................. CGGCACGGCCACCGCGCCGGGCGTGGTGGATATC 18733 33 97.0 34 A................................ CTTTGGAGCTGCATAATGATGGGTATTTCTTTTT 18666 33 97.0 33 G................................ TTTGCGGCCATGATTTGTCTTGCTGTTTGCATA 18600 33 97.0 33 T................................ TTTCCCTGAGCCACCGACAAAGGCTTATCGGTA 18534 33 97.0 33 T................................ ACGTTTTGATGCCTACACCAAACCGCCGATGAC 18468 33 97.0 33 T................................ CGCTTATACAACCCGGGCGGAAGTTTTCCCCGC 18402 33 100.0 33 ................................. TTATTCGCGTTGGAAACAGCCATGCGTGTGGGG 18336 33 97.0 33 G................................ ATCTAGGGGTTAATTTTATCCAACAACATCCGC 18270 33 100.0 34 ................................. CTTTACAAATGATGTGCAAACCTTGACCGCTTGG 18203 33 97.0 34 T................................ CTTTTTGTCTTGTTTAGCCAATCTTAGTACAACA 18136 33 93.9 34 T............A................... AAACATTGTGCAACAAACGTTCCACACCACGGTG 18069 33 93.9 34 T............A................... TTCAAGGTTGTTGCAATAATCTAAAAATGCCAGC 18002 33 97.0 35 .............A................... AGGCAGACGGCCTGCATAATGGTCTTCCCACGGTT 17934 33 93.9 34 G............A................... CGTCGTATTCGGCAAAGGCCAACTGTCGAACTTG 17867 33 97.0 33 .............A................... ATAACCGCGATATTGTGATACCGCATGAAATTT 17801 33 93.9 33 T............A................... AAAACACCGATAGGCAAGCAGATGGGCGGTTTC 17735 33 93.9 33 T............A................... ATATGTATGTGATAATGCGCCCCGACAAGATCG 17669 33 97.0 34 .............A................... CGACGACCCACTGCCGAAAAATACGAAATTAAAC 17602 33 97.0 34 .............A................... CGATACCGTTACCATATTTCCGGCATGGAACGCC 17535 33 93.9 34 A............A................... CTTTAAAAAGGCGGGCAATGCCCGCCGTTGGTTA 17468 33 93.9 33 A............A................... CTCGCGTTTAAGGCTGATTAAGTAATGGCCTTT 17402 33 93.9 35 G............A................... AGTTCGTGCTTGATCCGGCCGGACTTGCCCTGCCT 17334 33 97.0 34 .............A................... GTTATCTGTTTCCGACAAAAACTCGGCATCTGTG 17267 33 90.9 35 G............A...........A....... TATCCCCAAAAAAACTTACTGAATCAGCCTGATAG 17199 33 97.0 34 .............A................... CAGCACGCGGTTAAATGGTGGGATGGTGACGTGC 17132 33 93.9 34 G............A................... CGAAATAGAGCCGTTTCCGTGTGCGGTGTTGTCT 17065 33 97.0 33 .............A................... GGAAACTGATTTAGAACGGCATGCCGATATTGC 16999 33 93.9 32 T............A................... AAGATGGCACGGATCAATGCTAGATAGCGGTT 16934 33 93.9 33 T............A................... GACCAAACGGGTTTCATTCGGTGGAACCATCAC 16868 33 93.9 32 G............A................... AATCTGCGGTTTGGTTTGTCCGCTTTGTGCAA 16803 33 93.9 32 AA............................... ACATGTCTTTTTGCAAGTTTGTGCGTCAAAGT 16738 33 90.9 32 TG................A.............. CGCCTACACGATGCCGCCATGAACCGTATTGA 16673 33 97.0 33 G................................ TCCCAGAATAATATCGAACTCTCCCGGTCTCAG 16607 33 93.9 32 AT............................... GTCCACGATTGCTTTAATTGCCGGCGGCAGTT 16542 33 97.0 33 .T............................... ATCAGCAATTGCTTTGATTGCTGGCGGCAACTC 16476 33 93.9 35 TT............................... CGCCAATGATGAGCGGTTATGGCATGCTTGGCGGG 16408 33 90.9 33 AT................A.............. CCCTCTCTTATGTGGGCAAAATCATTAACATCT 16342 33 90.9 37 GT.............A................. TTGGAAAAGGATTTTTTGAAATTCGTTGGGTTGGATG 16272 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= ===================================== ================== 129 33 97.1 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GAAATAGGGGAAATAGCATGTTGATGTTGATTACTTATGATATTTCGCTGGAAGACAAAGAGGGACAGGCGAGGTTGCGGCGCATAGCCAAACATTGCTTGGATTACGGCGTGCGCGTGCAATATTCGGTATTCGAGTGCGACGTAACGCCGGATCAGTGGGTGAAACTCAAAGCCAAGCTGCTCGACAGCTACCAGCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGAAAGGTGGAACATCACGGCGCGAAGGCGGCGGTGGACGTGTTTCAGGATACGCTGATCGTGTGAATCGCTAACCCGTGGTTCTCATGAAAATATGGGGAGGTTAGCGATACGAAATTGTTCTTTAACAATCAGGAATTTGAAATATGAGAGTGGAGCAGAATAAGGCTGTGCTATACTCGTGTTCCGCTTTTTTGAAAACGTTAGCGCACAAAGGCTCTGAATGCTTTGTTTGGCAAGCGTTTTCAAAGAGGC # Right flank : AAATGAGCCAAAAACACAGCATCATGCTTGGAAACCAGCCGCCTTCGGGCGGCTACATATTTATGCTTCTTTGTTAATTTCTTTCAGACGGCCTTGATGTTTTCTGTTTATGTTGGAAATGTTATATCTTTTTGAAACCAAATGATTTTGCGTGCATCCACCCATAGCGGCCATTCGCTGCCGGGTTGTAGGTTGAGATTATGGGTTTCCGAGGGATCGAGGTGCAGCTGTATTTCGCCGTGTTGCGGGTGGATGAGTGTGAGTAGGCTGCGGTCGGGCAGGCGGGTGTGGGCGGTGATTTTGGCGTTTTGTCCTTGAGGGTGGTTGAAGTGTATGGCTTGTCGGGGAATGTAGCGGGTGTCGTTGACGTTGTCGGCGCCGATCAAACGGGCGGCGCGGGCGTCGGAGGGGGCGGCGATAAGTGCGCCGGGGGCGGCGAGTTGGATGATTCGGCCGTTGTGCATGAGGGCGATTTGGTCGGCAAGGGCGAAGGCTTCTTC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //