Array 1 239567-237724 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOY01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 146 NODE_2_length_371947_cov_20.2477, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 239566 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 239505 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 239444 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 239383 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 239322 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 239261 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 239199 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 239138 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 239077 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 239016 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 238955 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 238894 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 238833 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 238772 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 238711 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 238650 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 238589 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 238528 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 238467 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 238405 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 238302 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 238241 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 238180 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 238119 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 238058 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 237997 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 237936 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 237875 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 237814 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 237753 29 96.6 0 A............................ | A [237726] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 257192-255699 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOY01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 146 NODE_2_length_371947_cov_20.2477, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 257191 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 257130 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 257069 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 257008 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 256947 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 256886 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 256825 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 256764 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 256703 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 256642 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 256581 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 256520 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 256459 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 256398 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 256337 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 256276 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 256214 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 256153 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 256092 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 256031 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 255970 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 255909 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 255848 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 255787 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 255726 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //